Pregenerated sensors for LINC02806 (Homo sapiens)
Ensembl gene IDs: ENSG00000238107Ensembl transcript IDs: ENST00000427169.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGCTCTCTCAGCCTCTTTCAGCCCCCTGCAGATACAGTAGGAAGATaGCAGTCTATGACCAGGAAGAGGTTCCTCACCATAACCCTACCA | + |
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Preference number: 5 (lower is better) Translates to: SSLSLFQPPADTVGR*QSMTRKRFLTITLP Trigger: TGGTAGGGTTATGGTGAGGAACCTCTTCCTGGTCATAGACTGCCATCTTCCTACTGTATCTGCAGGGGGCTGAAAGAGGCTGAGAGAGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000427169.1 |
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| CDS CCA 72 bp | AGCCTCTTTCAGCCCCCTGCAGATACAGTAGGAAGATaGCAGTCTATGACCAGGAAGAGGTTCCTCACCATA | + |
|
Preference number: 6 (lower is better) Translates to: SLFQPPADTVGR*QSMTRKRFLTI Trigger: TATGGTGAGGAACCTCTTCCTGGTCATAGACTGCCATCTTCCTACTGTATCTGCAGGGGGCTGAAAGAGGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000427169.1 |
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| CDS GCA 72 bp | ATGACCAGGAAGAGGTTCCTCACCATAACCCTACCATaGTGGCACCTTGACCTTAGACTTCCAAACTCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: MTRKRFLTITLP*WHLDLRLPNSR Trigger: TCTGGAGTTTGGAAGTCTAAGGTCAAGGTGCCAGCATGGTAGGGTTATGGTGAGGAACCTCTTCCTGGTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427169.1 |
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| CDS TCA 72 bp | GGCACCTTGACCTTAGACTTCCAAACTCCAGAACTGTaGGAAATGTCTGTTGTGGATCAGCTACCCAGTTTA | + |
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Preference number: 6 (lower is better) Translates to: GTLTLDFQTPEL*EMSVVDQLPSL Trigger: TAAACTGGGTAGCTGATCCACAACAGACATTTCTCACAGTTCTGGAGTTTGGAAGTCTAAGGTCAAGGTGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427169.1 |
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| CDS CCA 72 bp | ACTTCCAAACTCCAGAACTGTGAGAAATGTCTGTTGTaGATCAGCTACCCAGTTTATGGTACATTAGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: TSKLQNCEKCLL*ISYPVYGTLAP Trigger: TGGAGCTAATGTACCATAAACTGGGTAGCTGATCCACAACAGACATTTCTCACAGTTCTGGAGTTTGGAAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000427169.1 |
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