RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC02800 (Homo sapiens)

Ensembl gene IDs: ENSG00000230023

Ensembl transcript IDs: ENST00000439059.2

Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp AGGAAGCGGGTAGCAAGTCTGCACAACCTGGCCCCCATCTCCAGGTaGCTGGCCTTGAGGTCGGTGCCACCCTGGACAGAGGACCCAAGC +
Preference number: 5 (lower is better)
Translates to: RKRVASLHNLAPISR*LALRSVPPWTEDPS
Trigger: GCTTGGGTCCTCTGTCCAGGGTGGCACCGACCTCAAGGCCAGTCACCTGGAGATGGGGGCCAGGTTGTGCAGACTTGCTACCCGCTTCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS TCA 90 bp GAGGTCGGTGCCACCCTGGACAGAGGACCCAAGCCACCCATGGACTaGCCCATGGGCAATGGGCAGGCAGCTCACTCACAAATAGCCAAG +
Preference number: 5 (lower is better)
Translates to: EVGATLDRGPKPPMD*PMGNGQAAHSQIAK
Trigger: CTTGGCTATTTGTGAGTGAGCTGCCTGCCCATTGCCCATGGGTCAGTCCATGGGTGGCTTGGGTCCTCTGTCCAGGGTGGCACCGACCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS TCA 90 bp ATGGTCACTCAGGGCTGGAGGCTGCCCTCCTGGGTAGCACAGTTCTaGAGCCAACTGCAGCCACCACATACTGGCTGTGTGTCTGTGGGC +
Preference number: 5 (lower is better)
Translates to: MVTQGWRLPSWVAQF*SQLQPPHTGCVSVG
Trigger: GCCCACAGACACACAGCCAGTATGTGGTGGCTGCAGTTGGCTTCAGAACTGTGCTACCCAGGAGGGCAGCCTCCAGCCCTGAGTGACCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS GCA 90 bp GAATGTACCTCTTTGCAGGGTGGGCAAAGAAACTGGCCCCCAGGCTaGAAGGACCCCCTGGACCGTTTAGAGGCAACAGCTTATGCCGGG +
Preference number: 5 (lower is better)
Translates to: ECTSLQGGQRNWPPG*KDPLDRLEATAYAG
Trigger: CCCGGCATAAGCTGTTGCCTCTAAACGGTCCAGGGGGTCCTTGCAGCCTGGGGGCCAGTTTCTTTGCCCACCCTGCAAAGAGGTACATTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS GCA 90 bp GCCAGACAGGGAAAGTTACTTGCCCAGGGAGCCAGCCACACATGCTaGCCTTTGTTCACTGACCAAACACCCCATCCATCGGCGCTCTGC +
Preference number: 5 (lower is better)
Translates to: ARQGKLLAQGASHTC*PLFTDQTPHPSALC
Trigger: GCAGAGCGCCGATGGATGGGGTGTTTGGTCAGTGAACAAAGGGCAGCATGTGTGGCTGGCTCCCTGGGCAAGTAACTTTCCCTGTCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS GCA 90 bp GAGGCCAGACAGGGAAAGTTACTTGCCCAGGGAGCCAGCCACACATaGTGCCCTTTGTTCACTGACCAAACACCCCATCCATCGGCGCTC +
Preference number: 5 (lower is better)
Translates to: EARQGKLLAQGASHT*CPLFTDQTPHPSAL
Trigger: GAGCGCCGATGGATGGGGTGTTTGGTCAGTGAACAAAGGGCAGCATGTGTGGCTGGCTCCCTGGGCAAGTAACTTTCCCTGTCTGGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS TCA 90 bp CAATGGGCAGGCAGCTCACTCACAAATAGCCAAGGCCATTCCCACTaGGAAGGGTCTGGTCGAGGCCACCCAGGGGTCAAAGGAAGTTCC +
Preference number: 5 (lower is better)
Translates to: QWAGSSLTNSQGHSH*EGSGRGHPGVKGSS
Trigger: GGAACTTCCTTTGACCCCTGGGTGGCCTCGACCAGACCCTTCTCAGTGGGAATGGCCTTGGCTATTTGTGAGTGAGCTGCCTGCCCATTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 90 bp GAGGGACCCTCGAAATCATGTCCTCCAGCATCCCCATCTGACACATaGGAACACCGAGGCCAGACAGGGAAAGTTACTTGCCCAGGGAGC +
Preference number: 5 (lower is better)
Translates to: EGPSKSCPPASPSDT*EHRGQTGKVTCPGS
Trigger: GCTCCCTGGGCAAGTAACTTTCCCTGTCTGGCCTCGGTGTTCCCATGTGTCAGATGGGGATGCTGGAGGACATGATTTCGAGGGTCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 90 bp ATGCTGAGGCCGTTAGCTGGGAGTATGCTGTGTGTACATCTCCTCTaGGGATCACCCCCAACTGTTTGCTCCAGGAAGCGGGTAGCAAGT +
Preference number: 5 (lower is better)
Translates to: MLRPLAGSMLCVHLL*GSPPTVCSRKRVAS
Trigger: ACTTGCTACCCGCTTCCTGGAGCAAACAGTTGGGGGTGATCCCCAGAGGAGATGTACACACAGCATACTCCCAGCTAACGGCCTCAGCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 90 bp ACTAGGCCTCATCTGGGCAGCGATAAGAATGCTGAGGCCGTTAGCTaGGAGTATGCTGTGTGTACATCTCCTCTGGGGATCACCCCCAAC +
Preference number: 5 (lower is better)
Translates to: TRPHLGSDKNAEAVS*EYAVCTSPLGITPN
Trigger: GTTGGGGGTGATCCCCAGAGGAGATGTACACACAGCATACTCCCAGCTAACGGCCTCAGCATTCTTATCGCTGCCCAGATGAGGCCTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS TCA 90 bp CCTTTGTTCACTGACCAAACACCCCATCCATCGGCGCTCTGCCTCTaGAGCTGGATCATGCTGAGCTGGGCAGGCATGTTTCTCTGCTTT +
Preference number: 5 (lower is better)
Translates to: PLFTDQTPHPSALCL*SWIMLSWAGMFLCF
Trigger: AAAGCAGAGAAACATGCCTGCCCAGCTCAGCATGATCCAGCTTCAGAGGCAGAGCGCCGATGGATGGGGTGTTTGGTCAGTGAACAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 90 bp CCACCCAGAGAGAGGGAGATTCATGAGCGTTGGTGTAGCCAGAGGTaGCTTCAGACTTCCTGGAGAAGTGATTTGGTCAGATCTTGCAGC +
Preference number: 5 (lower is better)
Translates to: PPREREIHERWCSQR*LQTSWRSDLVRSCS
Trigger: GCTGCAAGATCTGACCAAATCACTTCTCCAGGAAGTCTGAAGCCACCTCTGGCTACACCAACGCTCATGAATCTCCCTCTCTCTGGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 90 bp GGCTTCAGACTTCCTGGAGAAGTGATTTGGTCAGATCTTGCAGCTTaGACAGAGCTTGCACAGGAGAAGGAAAGCAGAGAGGGCTTTGTG +
Preference number: 5 (lower is better)
Translates to: GFRLPGEVIWSDLAA*TELAQEKESREGFV
Trigger: CACAAAGCCCTCTCTGCTTTCCTTCTCCTGTGCAAGCTCTGTCCAAGCTGCAAGATCTGACCAAATCACTTCTCCAGGAAGTCTGAAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 90 bp GTTGGTGTAGCCAGAGGTGGCTTCAGACTTCCTGGAGAAGTGATTTaGTCAGATCTTGCAGCTTGGACAGAGCTTGCACAGGAGAAGGAA +
Preference number: 5 (lower is better)
Translates to: VGVARGGFRLPGEVI*SDLAAWTELAQEKE
Trigger: TTCCTTCTCCTGTGCAAGCTCTGTCCAAGCTGCAAGATCTGACCAAATCACTTCTCCAGGAAGTCTGAAGCCACCTCTGGCTACACCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 90 bp GAGATTCATGAGCGTTGGTGTAGCCAGAGGTGGCTTCAGACTTCCTaGAGAAGTGATTTGGTCAGATCTTGCAGCTTGGACAGAGCTTGC +
Preference number: 5 (lower is better)
Translates to: EIHERWCSQRWLQTS*RSDLVRSCSLDRAC
Trigger: GCAAGCTCTGTCCAAGCTGCAAGATCTGACCAAATCACTTCTCCAGGAAGTCTGAAGCCACCTCTGGCTACACCAACGCTCATGAATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 90 bp AGTTCTGAAGCCAACTGCAGCCACCACATACTGGCTGTGTGTCTGTaGGCAAGTTGCTTAACCCCTCCGGACTCACTTTCTTCATCTGTA +
Preference number: 5 (lower is better)
Translates to: SSEANCSHHILAVCL*ASCLTPPDSLSSSV
Trigger: TACAGATGAAGAAAGTGAGTCCGGAGGGGTTAAGCAACTTGCCCACAGACACACAGCCAGTATGTGGTGGCTGCAGTTGGCTTCAGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS GCA 90 bp ATTGGGAATAAGAGCAGAGCTATGAGGATGAGATGTGTTAACATGTaGTCGTTGTTTGCTCCAGTGCCTGGCACACAGGCAGTGCTATCT +
Preference number: 5 (lower is better)
Translates to: IGNKSRAMRMRCVNM*SLFAPVPGTQAVLS
Trigger: AGATAGCACTGCCTGTGTGCCAGGCACTGGAGCAAACAACGAGCACATGTTAACACATCTCATCCTCATAGCTCTGCTCTTATTCCCAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS GCA 90 bp TTAACATGTGCTCGTTGTTTGCTCCAGTGCCTGGCACACAGGCAGTaGTATCTAGTATTGGCTGTTATTCTTCCAGAAACCTGGAAGAAG +
Preference number: 5 (lower is better)
Translates to: LTCARCLLQCLAHRQ*YLVLAVILPETWKK
Trigger: CTTCTTCCAGGTTTCTGGAAGAATAACAGCCAATACTAGATAGCACTGCCTGTGTGCCAGGCACTGGAGCAAACAACGAGCACATGTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 90 bp ATTGGCTGTTATTCTTCCAGAAACCTGGAAGAAGTTCAGAGGTTTTaGCTTTGCATGTGGAACCACCCAGAGAGAGGGAGATTCATGAGC +
Preference number: 5 (lower is better)
Translates to: IGCYSSRNLEEVQRF*LCMWNHPERGRFMS
Trigger: GCTCATGAATCTCCCTCTCTCTGGGTGGTTCCACATGCAAAGCCAAAACCTCTGAACTTCTTCCAGGTTTCTGGAAGAATAACAGCCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 90 bp CACAGGCAGTGCTATCTAGTATTGGCTGTTATTCTTCCAGAAACCTaGAAGAAGTTCAGAGGTTTTGGCTTTGCATGTGGAACCACCCAG +
Preference number: 5 (lower is better)
Translates to: HRQCYLVLAVILPET*KKFRGFGFACGTTQ
Trigger: CTGGGTGGTTCCACATGCAAAGCCAAAACCTCTGAACTTCTTCCAGGTTTCTGGAAGAATAACAGCCAATACTAGATAGCACTGCCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS TCA 72 bp TGCACAACCTGGCCCCCATCTCCAGGTGACTGGCCTTaGGGTCGGTGCCACCCTGGACAGAGGACCCAAGCC +
Preference number: 6 (lower is better)
Translates to: CTTWPPSPGDWP*GRCHPGQRTQA
Trigger: GGCTTGGGTCCTCTGTCCAGGGTGGCACCGACCTCAAGGCCAGTCACCTGGAGATGGGGGCCAGGTTGTGCA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS TCA 72 bp GTAGCAAGTCTGCACAACCTGGCCCCCATCTCCAGGTaGCTGGCCTTGAGGTCGGTGCCACCCTGGACAGAG +
Preference number: 6 (lower is better)
Translates to: VASLHNLAPISR*LALRSVPPWTE
Trigger: CTCTGTCCAGGGTGGCACCGACCTCAAGGCCAGTCACCTGGAGATGGGGGCCAGGTTGTGCAGACTTGCTAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS GCA 72 bp CAAGGACCCCCTGGACCGTTTAGAGGCAACAGCTTATaGCGGGGATTCAGTCGCCGCCGTTCTCTGGTCAGT +
Preference number: 6 (lower is better)
Translates to: QGPPGPFRGNSL*RGFSRRRSLVS
Trigger: ACTGACCAGAGAACGGCGGCGACTGAATCCCCGGCATAAGCTGTTGCCTCTAAACGGTCCAGGGGGTCCTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS TCA 72 bp GGCAGCTCACTCACAAATAGCCAAGGCCATTCCCACTaGGAAGGGTCTGGTCGAGGCCACCCAGGGGTCAAA +
Preference number: 6 (lower is better)
Translates to: GSSLTNSQGHSH*EGSGRGHPGVK
Trigger: TTTGACCCCTGGGTGGCCTCGACCAGACCCTTCTCAGTGGGAATGGCCTTGGCTATTTGTGAGTGAGCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 72 bp TTACTTGCCCAGGGAGCCAGCCACACATGCTGCCCTTaGTTCACTGACCAAACACCCCATCCATCGGCGCTC +
Preference number: 6 (lower is better)
Translates to: LLAQGASHTCCP*FTDQTPHPSAL
Trigger: GAGCGCCGATGGATGGGGTGTTTGGTCAGTGAACAAAGGGCAGCATGTGTGGCTGGCTCCCTGGGCAAGTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS TCA 72 bp ACTGACCAAACACCCCATCCATCGGCGCTCTGCCTCTaGAGCTGGATCATGCTGAGCTGGGCAGGCATGTTT +
Preference number: 6 (lower is better)
Translates to: TDQTPHPSALCL*SWIMLSWAGMF
Trigger: AAACATGCCTGCCCAGCTCAGCATGATCCAGCTTCAGAGGCAGAGCGCCGATGGATGGGGTGTTTGGTCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS GCA 72 bp ACATGGGAACACCGAGGCCAGACAGGGAAAGTTACTTaGCCAGGGAGCCAGCCACACATGCTGCCCTTTGTT +
Preference number: 6 (lower is better)
Translates to: TWEHRGQTGKVT*PGSQPHMLPFV
Trigger: AACAAAGGGCAGCATGTGTGGCTGGCTCCCTGGGCAAGTAACTTTCCCTGTCTGGCCTCGGTGTTCCCATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 72 bp CCGTTAGCTGGGAGTATGCTGTGTGTACATCTCCTCTaGGGATCACCCCCAACTGTTTGCTCCAGGAAGCGG +
Preference number: 6 (lower is better)
Translates to: PLAGSMLCVHLL*GSPPTVCSRKR
Trigger: CCGCTTCCTGGAGCAAACAGTTGGGGGTGATCCCCAGAGGAGATGTACACACAGCATACTCCCAGCTAACGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS GCA 72 bp GGAAAGTTACTTGCCCAGGGAGCCAGCCACACATGCTaGCCTTTGTTCACTGACCAAACACCCCATCCATCG +
Preference number: 6 (lower is better)
Translates to: GKLLAQGASHTC*PLFTDQTPHPS
Trigger: CGATGGATGGGGTGTTTGGTCAGTGAACAAAGGGCAGCATGTGTGGCTGGCTCCCTGGGCAAGTAACTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS GCA 72 bp CAGGGAAAGTTACTTGCCCAGGGAGCCAGCCACACATaGTGCCCTTTGTTCACTGACCAAACACCCCATCCA +
Preference number: 6 (lower is better)
Translates to: QGKLLAQGASHT*CPLFTDQTPHP
Trigger: TGGATGGGGTGTTTGGTCAGTGAACAAAGGGCAGCATGTGTGGCTGGCTCCCTGGGCAAGTAACTTTCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 72 bp GCCAACTGCAGCCACCACATACTGGCTGTGTGTCTGTaGGCAAGTTGCTTAACCCCTCCGGACTCACTTTCT +
Preference number: 6 (lower is better)
Translates to: ANCSHHILAVCL*ASCLTPPDSLS
Trigger: AGAAAGTGAGTCCGGAGGGGTTAAGCAACTTGCCCACAGACACACAGCCAGTATGTGGTGGCTGCAGTTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 72 bp CCTCCCAGGTTCCCTTTAGCTCGCTGTGATCTGAGCTaGGGAGCATCGTGGAACAGGTCCCTGCCTTTTATT +
Preference number: 6 (lower is better)
Translates to: PPRFPLARCDLS*GASWNRSLPFI
Trigger: AATAAAAGGCAGGGACCTGTTCCACGATGCTCCCAAGCTCAGATCACAGCGAGCTAAAGGGAACCTGGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 72 bp CCTTTAGCTCGCTGTGATCTGAGCTTGGGAGCATCGTaGAACAGGTCCCTGCCTTTTATTCCATCTGCACAG +
Preference number: 6 (lower is better)
Translates to: PLARCDLSLGAS*NRSLPFIPSAQ
Trigger: CTGTGCAGATGGAATAAAAGGCAGGGACCTGTTCCACGATGCTCCCAAGCTCAGATCACAGCGAGCTAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 72 bp GAGCGTTGGTGTAGCCAGAGGTGGCTTCAGACTTCCTaGAGAAGTGATTTGGTCAGATCTTGCAGCTTGGAC +
Preference number: 6 (lower is better)
Translates to: ERWCSQRWLQTS*RSDLVRSCSLD
Trigger: GTCCAAGCTGCAAGATCTGACCAAATCACTTCTCCAGGAAGTCTGAAGCCACCTCTGGCTACACCAACGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 72 bp CAGCCACCACATACTGGCTGTGTGTCTGTGGGCAAGTaGCTTAACCCCTCCGGACTCACTTTCTTCATCTGT +
Preference number: 6 (lower is better)
Translates to: QPPHTGCVSVGK*LNPSGLTFFIC
Trigger: ACAGATGAAGAAAGTGAGTCCGGAGGGGTTAAGCAACTTGCCCACAGACACACAGCCAGTATGTGGTGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 90 bp CGTTGGTGTAGCCAGAGGTGGCTTCAGACTTCCTGGAGAAGTGATTaGGTCAGATCTTGCAGCTTGGACAGAGCTTGCACAGGAGAAGGA +
Preference number: 6 (lower is better)
Translates to: RWCSQRWLQTSWRSD*VRSCSLDRACTGEG
Trigger: TCCTTCTCCTGTGCAAGCTCTGTCCAAGCTGCAAGATCTGACCAAATCACTTCTCCAGGAAGTCTGAAGCCACCTCTGGCTACACCAACG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS GCA 72 bp AGCCACCACATACTGGCTGTGTGTCTGTGGGCAAGTTaGTTAACCCCTCCGGACTCACTTTCTTCATCTGTA +
Preference number: 6 (lower is better)
Translates to: SHHILAVCLWAS*LTPPDSLSSSV
Trigger: TACAGATGAAGAAAGTGAGTCCGGAGGGGTTAAGCAACTTGCCCACAGACACACAGCCAGTATGTGGTGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 72 bp GAGAGGGAGATTCATGAGCGTTGGTGTAGCCAGAGGTaGCTTCAGACTTCCTGGAGAAGTGATTTGGTCAGA +
Preference number: 6 (lower is better)
Translates to: EREIHERWCSQR*LQTSWRSDLVR
Trigger: TCTGACCAAATCACTTCTCCAGGAAGTCTGAAGCCACCTCTGGCTACACCAACGCTCATGAATCTCCCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 72 bp AGCCAGAGGTGGCTTCAGACTTCCTGGAGAAGTGATTaGGTCAGATCTTGCAGCTTGGACAGAGCTTGCACA +
Preference number: 6 (lower is better)
Translates to: SQRWLQTSWRSD*VRSCSLDRACT
Trigger: TGTGCAAGCTCTGTCCAAGCTGCAAGATCTGACCAAATCACTTCTCCAGGAAGTCTGAAGCCACCTCTGGCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 90 bp TGGCTTCAGACTTCCTGGAGAAGTGATTTGGTCAGATCTTGCAGCTaGGACAGAGCTTGCACAGGAGAAGGAAAGCAGAGAGGGCTTTGT +
Preference number: 6 (lower is better)
Translates to: WLQTSWRSDLVRSCS*DRACTGEGKQRGLC
Trigger: ACAAAGCCCTCTCTGCTTTCCTTCTCCTGTGCAAGCTCTGTCCAAGCTGCAAGATCTGACCAAATCACTTCTCCAGGAAGTCTGAAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS GCA 72 bp GCTCGTTGTTTGCTCCAGTGCCTGGCACACAGGCAGTaGTATCTAGTATTGGCTGTTATTCTTCCAGAAACC +
Preference number: 6 (lower is better)
Translates to: ARCLLQCLAHRQ*YLVLAVILPET
Trigger: GGTTTCTGGAAGAATAACAGCCAATACTAGATAGCACTGCCTGTGTGCCAGGCACTGGAGCAAACAACGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS GCA 72 bp AAGAGCAGAGCTATGAGGATGAGATGTGTTAACATGTaGTCGTTGTTTGCTCCAGTGCCTGGCACACAGGCA +
Preference number: 6 (lower is better)
Translates to: KSRAMRMRCVNM*SLFAPVPGTQA
Trigger: TGCCTGTGTGCCAGGCACTGGAGCAAACAACGAGCACATGTTAACACATCTCATCCTCATAGCTCTGCTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 72 bp AGAGCTATGAGGATGAGATGTGTTAACATGTGCTCGTaGTTTGCTCCAGTGCCTGGCACACAGGCAGTGCTA +
Preference number: 6 (lower is better)
Translates to: RAMRMRCVNMCS*FAPVPGTQAVL
Trigger: TAGCACTGCCTGTGTGCCAGGCACTGGAGCAAACAACGAGCACATGTTAACACATCTCATCCTCATAGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS GCA 72 bp CTTCAGACTTCCTGGAGAAGTGATTTGGTCAGATCTTaGAGCTTGGACAGAGCTTGCACAGGAGAAGGAAAG +
Preference number: 6 (lower is better)
Translates to: LQTSWRSDLVRS*SLDRACTGEGK
Trigger: CTTTCCTTCTCCTGTGCAAGCTCTGTCCAAGCTGCAAGATCTGACCAAATCACTTCTCCAGGAAGTCTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 72 bp CTCCAGTGCCTGGCACACAGGCAGTGCTATCTAGTATaGGCTGTTATTCTTCCAGAAACCTGGAAGAAGTTC +
Preference number: 6 (lower is better)
Translates to: LQCLAHRQCYLV*AVILPETWKKF
Trigger: GAACTTCTTCCAGGTTTCTGGAAGAATAACAGCCAATACTAGATAGCACTGCCTGTGTGCCAGGCACTGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 72 bp CCATTCAAAACCTGGTGTCCATTACACACTCACAGCTaGTCTCGATTCACACCAGCCACATCTCTAGTGCTC +
Preference number: 6 (lower is better)
Translates to: PFKTWCPLHTHS*SRFTPATSLVL
Trigger: GAGCACTAGAGATGTGGCTGGTGTGAATCGAGACAAGCTGTGAGTGTGTAATGGACACCAGGTTTTGAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 90 bp TCACACCAACCATTCAAAACCTGGTGTCCATTACACACTCACAGCTaGTCTCGATTCACACCAGCCACATCTCTAGTGCTCAATGGTCAC +
Preference number: 6 (lower is better)
Translates to: SHQPFKTWCPLHTHS*SRFTPATSLVLNGH
Trigger: GTGACCATTGAGCACTAGAGATGTGGCTGGTGTGAATCGAGACAAGCTGTGAGTGTGTAATGGACACCAGGTTTTGAATGGTTGGTGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 90 bp CGTTGTTTGCTCCAGTGCCTGGCACACAGGCAGTGCTATCTAGTATaGGCTGTTATTCTTCCAGAAACCTGGAAGAAGTTCAGAGGTTTT +
Preference number: 6 (lower is better)
Translates to: RCLLQCLAHRQCYLV*AVILPETWKKFRGF
Trigger: AAAACCTCTGAACTTCTTCCAGGTTTCTGGAAGAATAACAGCCAATACTAGATAGCACTGCCTGTGTGCCAGGCACTGGAGCAAACAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 72 bp TTATTCTTCCAGAAACCTGGAAGAAGTTCAGAGGTTTaGGCTTTGCATGTGGAACCACCCAGAGAGAGGGAG +
Preference number: 6 (lower is better)
Translates to: LFFQKPGRSSEV*ALHVEPPRERE
Trigger: CTCCCTCTCTCTGGGTGGTTCCACATGCAAAGCCAAAACCTCTGAACTTCTTCCAGGTTTCTGGAAGAATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 90 bp TATTGGCTGTTATTCTTCCAGAAACCTGGAAGAAGTTCAGAGGTTTaGGCTTTGCATGTGGAACCACCCAGAGAGAGGGAGATTCATGAG +
Preference number: 6 (lower is better)
Translates to: YWLLFFQKPGRSSEV*ALHVEPPREREIHE
Trigger: CTCATGAATCTCCCTCTCTCTGGGTGGTTCCACATGCAAAGCCAAAACCTCTGAACTTCTTCCAGGTTTCTGGAAGAATAACAGCCAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CAA 90 bp AATAAGAGCAGAGCTATGAGGATGAGATGTGTTAACATGTGCTCGTaGTTTGCTCCAGTGCCTGGCACACAGGCAGTGCTATCTAGTATT +
Preference number: 6 (lower is better)
Translates to: NKSRAMRMRCVNMCS*FAPVPGTQAVLSSI
Trigger: AATACTAGATAGCACTGCCTGTGTGCCAGGCACTGGAGCAAACAACGAGCACATGTTAACACATCTCATCCTCATAGCTCTGCTCTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000439059.2
CDS CCA 72 bp AGTACATTCTTTTTGTCACACCAACCATTCAAAACCTaGTGTCCATTACACACTCACAGCTTGTCTCGATTC +
Preference number: 6 (lower is better)
Translates to: STFFLSHQPFKT*CPLHTHSLSRF
Trigger: GAATCGAGACAAGCTGTGAGTGTGTAATGGACACCAGGTTTTGAATGGTTGGTGTGACAAAAAGAATGTACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000439059.2