Pregenerated sensors for LINC02798 (Homo sapiens)
Ensembl gene IDs: ENSG00000227082Ensembl transcript IDs: ENST00000417218.1, ENST00000445260.2, ENST00000650414.1, ENST00000664311.1, ENST00000668551.1, ENST00000670866.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCCTGTAATCCCAGCACTTCAGGGGGCCAAGGCGAAAGGACTGCTTaGGCTCAGGAGTTGGAGACCAGCCTAGGCCACACAGGGAAACCT | + |
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Preference number: 5 (lower is better) Translates to: ACNPSTSGGQGERTA*AQELETSLGHTGKP Trigger: AGGTTTCCCTGTGTGGCCTAGGCTGGTCTCCAACTCCTGAGCTCAAGCAGTCCTTTCGCCTTGGCCCCCTGAAGTGCTGGGATTACAGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445260.2 |
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| CDS CCA 90 bp | CACAATCATGGCAGAAGGCAAGAAAGAGCAAGTCAACATCTTACATaGGTGGTGGCAGGCAAAGAGAGAGCTTGTGCAGAGAAACTCCTG | + |
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Preference number: 5 (lower is better) Translates to: HNHGRRQERASQHLT*VVAGKERACAEKLL Trigger: CAGGAGTTTCTCTGCACAAGCTCTCTCTTTGCCTGCCACCACCCATGTAAGATGTTGACTTGCTCTTTCTTGCCTTCTGCCATGATTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650414.1 ENST00000668551.1 |
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| CDS CCA 90 bp | ATCATGGCAGAAGGCAAGAAAGAGCAAGTCAACATCTTACATGGGTaGTGGCAGGCAAAGAGAGAGCTTGTGCAGAGAAACTCCTGTTTT | + |
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Preference number: 5 (lower is better) Translates to: IMAEGKKEQVNILHG*WQAKRELVQRNSCF Trigger: AAAACAGGAGTTTCTCTGCACAAGCTCTCTCTTTGCCTGCCACCACCCATGTAAGATGTTGACTTGCTCTTTCTTGCCTTCTGCCATGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650414.1 ENST00000668551.1 |
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| CDS CCA 90 bp | CTAGGAAGAACAAGAGGTTTAATGGACTTAACAGTTCTACAGGAGTaGGAAGTTCTCACAATCATGGCAGAAGGCAAGAAAGAGCAAGTC | + |
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Preference number: 5 (lower is better) Translates to: LGRTRGLMDLTVLQE*EVLTIMAEGKKEQV Trigger: GACTTGCTCTTTCTTGCCTTCTGCCATGATTGTGAGAACTTCCCACTCCTGTAGAACTGTTAAGTCCATTAAACCTCTTGTTCTTCCTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668551.1 |
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| CDS CCA 90 bp | AGTAAGGGATTTATTTCAAATTTAGAACGTATGCAACTGTGGCAGTaGTCAGACTGTCTATATAATGCCTCACTTGGCCTGAAATTAGCA | + |
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Preference number: 5 (lower is better) Translates to: SKGFISNLERMQLWQ*SDCLYNASLGLKLA Trigger: TGCTAATTTCAGGCCAAGTGAGGCATTATATAGACAGTCTGACCACTGCCACAGTTGCATACGTTCTAAATTTGAAATAAATCCCTTACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000417218.1 ENST00000650414.1 ENST00000664311.1 ENST00000668551.1 ENST00000670866.1 |
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| CDS TCA 90 bp | TGTGATAGAAATAATATTCAAACCCCAGAATTTGATGCCAGATCCTaGGGTCTTGATATTCCTGTTCAAAATCACATCACAAGGTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: CDRNNIQTPEFDARS*GLDIPVQNHITRLF Trigger: GAACAACCTTGTGATGTGATTTTGAACAGGAATATCAAGACCTCAGGATCTGGCATCAAATTCTGGGGTTTGAATATTATTTCTATCACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000417218.1 ENST00000650414.1 ENST00000664311.1 ENST00000668551.1 ENST00000670866.1 |
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| CDS CCA 72 bp | ACAAGAGGTTTAATGGACTTAACAGTTCTACAGGAGTaGGAAGTTCTCACAATCATGGCAGAAGGCAAGAAA | + |
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Preference number: 6 (lower is better) Translates to: TRGLMDLTVLQE*EVLTIMAEGKK Trigger: TTTCTTGCCTTCTGCCATGATTGTGAGAACTTCCCACTCCTGTAGAACTGTTAAGTCCATTAAACCTCTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668551.1 |
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| CDS CAA 72 bp | TTCAAACCCCAGAATTTGATGCCAGATCCTGAGGTCTaGATATTCCTGTTCAAAATCACATCACAAGGTTGT | + |
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Preference number: 6 (lower is better) Translates to: FKPQNLMPDPEV*IFLFKITSQGC Trigger: ACAACCTTGTGATGTGATTTTGAACAGGAATATCAAGACCTCAGGATCTGGCATCAAATTCTGGGGTTTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000417218.1 ENST00000650414.1 ENST00000664311.1 ENST00000668551.1 ENST00000670866.1 |
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| CDS CCA 72 bp | AAGGGATTTATTTCAAATTTAGAACGTATGCAACTGTaGCAGTGGTCAGACTGTCTATATAATGCCTCACTT | + |
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Preference number: 6 (lower is better) Translates to: KGFISNLERMQL*QWSDCLYNASL Trigger: AAGTGAGGCATTATATAGACAGTCTGACCACTGCCACAGTTGCATACGTTCTAAATTTGAAATAAATCCCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000417218.1 ENST00000650414.1 ENST00000664311.1 ENST00000668551.1 ENST00000670866.1 |
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| CDS TCA 72 bp | AATAATATTCAAACCCCAGAATTTGATGCCAGATCCTaGGGTCTTGATATTCCTGTTCAAAATCACATCACA | + |
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Preference number: 6 (lower is better) Translates to: NNIQTPEFDARS*GLDIPVQNHIT Trigger: TGTGATGTGATTTTGAACAGGAATATCAAGACCTCAGGATCTGGCATCAAATTCTGGGGTTTGAATATTATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000417218.1 ENST00000650414.1 ENST00000664311.1 ENST00000668551.1 ENST00000670866.1 |
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| CDS CCA 72 bp | ATCCATCGCATTTTTCCAACTGGTTGTATTAGCCTATaGATGACAAATATTAAATGCTGTAGCATTTCATAC | + |
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Preference number: 6 (lower is better) Translates to: IHRIFPTGCISL*MTNIKCCSISY Trigger: GTATGAAATGCTACAGCATTTAATATTTGTCATCCATAGGCTAATACAACCAGTTGGAAAAATGCGATGGAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445260.2 |
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