Pregenerated sensors for LINC02797 (Homo sapiens)
Ensembl gene IDs: ENSG00000285808Ensembl transcript IDs: ENST00000650621.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTTATATCAGTGGCTCTCCTCGTTCTCAGGCCTCTGGATTCAGGTTaGAATTATACCATGAGTTTTCCTGGGATTCTGGCTCGTACTGGT | + |
|
Preference number: 5 (lower is better) Translates to: FISVALLVLRPLDSG*NYTMSFPGILARTG Trigger: ACCAGTACGAGCCAGAATCCCAGGAAAACTCATGGTATAATTTCAACCTGAATCCAGAGGCCTGAGAACGAGGAGAGCCACTGATATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650621.1 |
||
| CDS GCA 90 bp | CTGGAAACAGCTTCAGGTACTTCTATCATGAGGAGTGGTCCAGCATaGCTACAGAGGTTGTCCAACCCTAAAAATTTACTCTTCCTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: LETASGTSIMRSGPA*LQRLSNPKNLLFLS Trigger: AGAAAGGAAGAGTAAATTTTTAGGGTTGGACAACCTCTGTAGGCATGCTGGACCACTCCTCATGATAGAAGTACCTGAAGCTGTTTCCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650621.1 |
||
| CDS GCA 90 bp | GTTGATTCCTATTTAGTGTTCTTCTATGTATTCCACACTTGCATTTaGAGACACATCCCAAAATCTACTTGTATTCTTCTTTACCCATCT | + |
|
Preference number: 5 (lower is better) Translates to: VDSYLVFFYVFHTCI*RHIPKSTCILLYPS Trigger: AGATGGGTAAAGAAGAATACAAGTAGATTTTGGGATGTGTCTGCAAATGCAAGTGTGGAATACATAGAAGAACACTAAATAGGAATCAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650621.1 |
||
| CDS CCA 72 bp | TACCATGAGTTTTCCTGGGATTCTGGCTCGTACTGGTaGCAGATAATGGGACTTCTCAGCCTCCAGCTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: YHEFSWDSGSYW*QIMGLLSLQLP Trigger: TGGAAGCTGGAGGCTGAGAAGTCCCATTATCTGCCACCAGTACGAGCCAGAATCCCAGGAAAACTCATGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650621.1 |
||
| CDS TCA 72 bp | GTGGCTCTCCTCGTTCTCAGGCCTCTGGATTCAGGTTaGAATTATACCATGAGTTTTCCTGGGATTCTGGCT | + |
|
Preference number: 6 (lower is better) Translates to: VALLVLRPLDSG*NYTMSFPGILA Trigger: AGCCAGAATCCCAGGAAAACTCATGGTATAATTTCAACCTGAATCCAGAGGCCTGAGAACGAGGAGAGCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650621.1 |
||
| CDS TCA 72 bp | TTCTCAGGCCTCTGGATTCAGGTTGAAATTATACCATaGGTTTTCCTGGGATTCTGGCTCGTACTGGTGGCA | + |
|
Preference number: 6 (lower is better) Translates to: FSGLWIQVEIIP*VFLGFWLVLVA Trigger: TGCCACCAGTACGAGCCAGAATCCCAGGAAAACTCATGGTATAATTTCAACCTGAATCCAGAGGCCTGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650621.1 |
||
| CDS GCA 72 bp | GCTTCAGGTACTTCTATCATGAGGAGTGGTCCAGCATaGCTACAGAGGTTGTCCAACCCTAAAAATTTACTC | + |
|
Preference number: 6 (lower is better) Translates to: ASGTSIMRSGPA*LQRLSNPKNLL Trigger: GAGTAAATTTTTAGGGTTGGACAACCTCTGTAGGCATGCTGGACCACTCCTCATGATAGAAGTACCTGAAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650621.1 |
||
| CDS CCA 72 bp | AAGAGCACTGCAGTTTGGCATATTTATCGGGAACACTaGAGTTCTTTGCTCATCTCCAACTTAAATACCTCG | + |
|
Preference number: 6 (lower is better) Translates to: KSTAVWHIYREH*SSLLISNLNTS Trigger: CGAGGTATTTAAGTTGGAGATGAGCAAAGAACTCCAGTGTTCCCGATAAATATGCCAAACTGCAGTGCTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650621.1 |
||
| CDS CCA 72 bp | AGCTTCCATAACAACATTAATCATAGTTCTGGAGACTaGGACATCCAAGGTCAATGTGCTGGCAGATTCAAT | + |
|
Preference number: 6 (lower is better) Translates to: SFHNNINHSSGD*DIQGQCAGRFN Trigger: ATTGAATCTGCCAGCACATTGACCTTGGATGTCCCAGTCTCCAGAACTATGATTAATGTTGTTATGGAAGCT 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650621.1 |
||
| CDS CAA 90 bp | CTCAGTGTCTTTAAAAATGCTGATCACAACAAAGAGCACTGCAGTTaGGCATATTTATCGGGAACACTGGAGTTCTTTGCTCATCTCCAA | + |
|
Preference number: 6 (lower is better) Translates to: LSVFKNADHNKEHCS*AYLSGTLEFFAHLQ Trigger: TTGGAGATGAGCAAAGAACTCCAGTGTTCCCGATAAATATGCCAAACTGCAGTGCTCTTTGTTGTGATCAGCATTTTTAAAGACACTGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650621.1 |
||
| CDS CCA 72 bp | CTGGCAGATTCAATGTCTGGTAAGTTCCCATTTTTCTaGATCATAGATGGCTGCTTTTTCTCAGTGTCTTTA | + |
|
Preference number: 6 (lower is better) Translates to: LADSMSGKFPFF*IIDGCFFSVSL Trigger: TAAAGACACTGAGAAAAAGCAGCCATCTATGATCCAGAAAAATGGGAACTTACCAGACATTGAATCTGCCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000650621.1 |
||
| CDS CAA 90 bp | TTCTTTGCTCATCTCCAACTTAAATACCTCGGAAAATACATATTCTaGTCAACTGGCAATACTCTCTGTAAACCACTCCTGAAGGCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: FFAHLQLKYLGKYIF*STGNTLCKPLLKAK Trigger: CTTTGCCTTCAGGAGTGGTTTACAGAGAGTATTGCCAGTTGACAAGAATATGTATTTTCCGAGGTATTTAAGTTGGAGATGAGCAAAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650621.1 |
||
| CDS CAA 72 bp | CCACACTTGCATTTGCAGACACATCCCAAAATCTACTaGTATTCTTCTTTACCCATCTTTTGCTATTATTTC | + |
|
Preference number: 6 (lower is better) Translates to: PHLHLQTHPKIY*YSSLPIFCYYF Trigger: GAAATAATAGCAAAAGATGGGTAAAGAAGAATACAAGTAGATTTTGGGATGTGTCTGCAAATGCAAGTGTGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650621.1 |
||