Pregenerated sensors for LINC02792 (Homo sapiens)
Ensembl gene IDs: ENSG00000285462Ensembl transcript IDs: ENST00000645557.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTCGGTTTCTTCCCTGAGCGTGGAATTCTGCCTGGACACTCTGAGTaGAAGGGTGCGGTGGGGTCTGTGGGTGTGTTAGTTGGCTTCATT | + |
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Preference number: 5 (lower is better) Translates to: VGFFPERGILPGHSE*KGAVGSVGVLVGFI Trigger: AATGAAGCCAACTAACACACCCACAGACCCCACCGCACCCTTCCACTCAGAGTGTCCAGGCAGAATTCCACGCTCAGGGAAGAAACCGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000645557.1 |
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| CDS CCA 90 bp | AAATGTCATCTTCACTGTGTAGGCAGGAGTGAGAGACCAGTCCAGTaGACCATAGCTCTACCGCACAGGTTTGTCCTCTTTCATATCTGC | + |
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Preference number: 5 (lower is better) Translates to: KCHLHCVGRSERPVQ*TIALPHRFVLFHIC Trigger: GCAGATATGAAAGAGGACAAACCTGTGCGGTAGAGCTATGGTCCACTGGACTGGTCTCTCACTCCTGCCTACACAGTGAAGATGACATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000645557.1 |
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| CDS GCA 72 bp | TACTTCTGGTCGGTTTCTTCCCTGAGCGTGGAATTCTaGCTGGACACTCTGAGTGGAAGGGTGCGGTGGGGT | + |
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Preference number: 6 (lower is better) Translates to: YFWSVSSLSVEF*LDTLSGRVRWG Trigger: ACCCCACCGCACCCTTCCACTCAGAGTGTCCAGGCAGAATTCCACGCTCAGGGAAGAAACCGACCAGAAGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000645557.1 |
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| CDS CCA 72 bp | CTTCACTGTGTAGGCAGGAGTGAGAGACCAGTCCAGTaGACCATAGCTCTACCGCACAGGTTTGTCCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: LHCVGRSERPVQ*TIALPHRFVLF Trigger: AAAGAGGACAAACCTGTGCGGTAGAGCTATGGTCCACTGGACTGGTCTCTCACTCCTGCCTACACAGTGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000645557.1 |
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| CDS CAA 90 bp | GGTCAACCTGGACCTCACCACCATGCCAATGTGAGAAAACATTCATaGCTAGTCATTATGGGTCAGCCTGTAAGCATAACCCTTCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: GQPGPHHHANVRKHS*LVIMGQPVSITLPQ Trigger: CTGGGGAAGGGTTATGCTTACAGGCTGACCCATAATGACTAGCAATGAATGTTTTCTCACATTGGCATGGTGGTGAGGTCCAGGTTGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000645557.1 |
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| CDS GCA 72 bp | ACAGGTAGAGCAGGGTCAACCTGGACCTCACCACCATaGCAATGTGAGAAAACATTCATTGCTAGTCATTAT | + |
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Preference number: 6 (lower is better) Translates to: TGRAGSTWTSPP*QCEKTFIASHY Trigger: ATAATGACTAGCAATGAATGTTTTCTCACATTGGCATGGTGGTGAGGTCCAGGTTGACCCTGCTCTACCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000645557.1 |
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| CDS CAA 72 bp | GGACCTCACCACCATGCCAATGTGAGAAAACATTCATaGCTAGTCATTATGGGTCAGCCTGTAAGCATAACC | + |
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Preference number: 6 (lower is better) Translates to: GPHHHANVRKHS*LVIMGQPVSIT Trigger: GGTTATGCTTACAGGCTGACCCATAATGACTAGCAATGAATGTTTTCTCACATTGGCATGGTGGTGAGGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000645557.1 |
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| CDS CCA 72 bp | ATGTTAGTAATCTGTGGTTTCCACAGGACACATAGCTaGTATGATTTCTCTGCTTTTACTTCTGGTCGGTTT | + |
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Preference number: 6 (lower is better) Translates to: MLVICGFHRTHS*YDFSAFTSGRF Trigger: AAACCGACCAGAAGTAAAAGCAGAGAAATCATACCAGCTATGTGTCCTGTGGAAACCACAGATTACTAACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000645557.1 |
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| CDS CAA 72 bp | TTTCTTTGTTTATATGGTGTCTCTCTTCCACACAGCTaGCTGTCCTCGTATGTTAGTAATCTGTGGTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: FLCLYGVSLPHS*LSSYVSNLWFP Trigger: TGGAAACCACAGATTACTAACATACGAGGACAGCAAGCTGTGTGGAAGAGAGACACCATATAAACAAAGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000645557.1 |
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| CDS CCA 72 bp | CATTTGATGTCAGAATTTAAGAGCCTTATTGCTATCTaGCATAAAGTATGGTTGACAAAATGTCTGATGCCT | + |
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Preference number: 6 (lower is better) Translates to: HLMSEFKSLIAI*HKVWLTKCLMP Trigger: AGGCATCAGACATTTTGTCAACCATACTTTATGCCAGATAGCAATAAGGCTCTTAAATTCTGACATCAAATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000645557.1 |
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| CDS GCA 72 bp | TATCTCATTACTGCCACTTATTTACTGGGTAATAAGTaGCCCTTTAACAATTTAACAATTGTGTGCTTTAGG | + |
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Preference number: 6 (lower is better) Translates to: YLITATYLLGNK*PFNNLTIVCFR Trigger: CCTAAAGCACACAATTGTTAAATTGTTAAAGGGGCACTTATTACCCAGTAAATAAGTGGCAGTAATGAGATA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000645557.1 |
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