Pregenerated sensors for LINC02788 (Homo sapiens)
Ensembl gene IDs: ENSG00000285532Ensembl transcript IDs: ENST00000650406.1, ENST00000662449.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCTGTGGGTGCAGACGCCTCCAGTGTCACTCCCCTGGATTTCGCTTaGGCAGAAGAAGAGATTGTAGGCCGGACCCCAACGCCGAAGCCC | + |
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Preference number: 5 (lower is better) Translates to: PVGADASSVTPLDFA*AEEEIVGRTPTPKP Trigger: GGGCTTCGGCGTTGGGGTCCGGCCTACAATCTCTTCTTCTGCCCAAGCGAAATCCAGGGGAGTGACACTGGAGGCGTCTGCACCCACAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662449.1 |
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| CDS CCA 90 bp | CTGGAGCTCTTTGTTGGGCACTGCTTTCAGAACCCACAGCACATCTaGTTTAAGAGCCTTGGAGGTGGCAAGCCATCTTCCTTTAGCATC | + |
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Preference number: 5 (lower is better) Translates to: LELFVGHCFQNPQHI*FKSLGGGKPSSFSI Trigger: GATGCTAAAGGAAGATGGCTTGCCACCTCCAAGGCTCTTAAACCAGATGTGCTGTGGGTTCTGAAAGCAGTGCCCAACAAAGAGCTCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650406.1 ENST00000662449.1 |
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| CDS TCA 72 bp | CCCCACCTCTCTGGACCCGAATGCTGCTCGCCTCGCTaGGGTCGCCTCACCACGCGGTTCCAAGGGCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: PHLSGPECCSPR*GRLTTRFQGQE Trigger: CTCCTGCCCTTGGAACCGCGTGGTGAGGCGACCTCAGCGAGGCGAGCAGCATTCGGGTCCAGAGAGGTGGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650406.1 |
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| CDS CAA 90 bp | CCCTGTGGGTGCAGACGCCTCCAGTGTCACTCCCCTGGATTTCGCTaGGGCAGAAGAAGAGATTGTAGGCCGGACCCCAACGCCGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: PCGCRRLQCHSPGFR*GRRRDCRPDPNAEA Trigger: GGCTTCGGCGTTGGGGTCCGGCCTACAATCTCTTCTTCTGCCCAAGCGAAATCCAGGGGAGTGACACTGGAGGCGTCTGCACCCACAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662449.1 |
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| CDS CCA 72 bp | GCAGACGCCTCCAGTGTCACTCCCCTGGATTTCGCTTaGGCAGAAGAAGAGATTGTAGGCCGGACCCCAACG | + |
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Preference number: 6 (lower is better) Translates to: ADASSVTPLDFA*AEEEIVGRTPT Trigger: CGTTGGGGTCCGGCCTACAATCTCTTCTTCTGCCCAAGCGAAATCCAGGGGAGTGACACTGGAGGCGTCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662449.1 |
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| CDS CAA 72 bp | TGCAGACGCCTCCAGTGTCACTCCCCTGGATTTCGCTaGGGCAGAAGAAGAGATTGTAGGCCGGACCCCAAC | + |
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Preference number: 6 (lower is better) Translates to: CRRLQCHSPGFR*GRRRDCRPDPN Trigger: GTTGGGGTCCGGCCTACAATCTCTTCTTCTGCCCAAGCGAAATCCAGGGGAGTGACACTGGAGGCGTCTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662449.1 |
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| CDS CCA 72 bp | TTTGTTGGGCACTGCTTTCAGAACCCACAGCACATCTaGTTTAAGAGCCTTGGAGGTGGCAAGCCATCTTCC | + |
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Preference number: 6 (lower is better) Translates to: FVGHCFQNPQHI*FKSLGGGKPSS Trigger: GGAAGATGGCTTGCCACCTCCAAGGCTCTTAAACCAGATGTGCTGTGGGTTCTGAAAGCAGTGCCCAACAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650406.1 ENST00000662449.1 |
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| CDS CAA 90 bp | TTGGGCACTGCTTTCAGAACCCACAGCACATCTGGTTTAAGAGCCTaGGAGGTGGCAAGCCATCTTCCTTTAGCATCCTTCAGTGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: LGTAFRTHSTSGLRA*EVASHLPLASFSAH Trigger: ATGAGCACTGAAGGATGCTAAAGGAAGATGGCTTGCCACCTCCAAGGCTCTTAAACCAGATGTGCTGTGGGTTCTGAAAGCAGTGCCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650406.1 ENST00000662449.1 |
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| CDS CAA 72 bp | GCTTTCAGAACCCACAGCACATCTGGTTTAAGAGCCTaGGAGGTGGCAAGCCATCTTCCTTTAGCATCCTTC | + |
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Preference number: 6 (lower is better) Translates to: AFRTHSTSGLRA*EVASHLPLASF Trigger: GAAGGATGCTAAAGGAAGATGGCTTGCCACCTCCAAGGCTCTTAAACCAGATGTGCTGTGGGTTCTGAAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650406.1 ENST00000662449.1 |
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| CDS GCA 72 bp | TTGCTCAAAACGTTTCTGGAGCTCTTTGTTGGGCACTaGTTTCAGAACCCACAGCACATCTGGTTTAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: LLKTFLELFVGH*FQNPQHIWFKS Trigger: GCTCTTAAACCAGATGTGCTGTGGGTTCTGAAAGCAGTGCCCAACAAAGAGCTCCAGAAACGTTTTGAGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000650406.1 ENST00000662449.1 |
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| CDS GCA 72 bp | TGTCACTTATTGTGTAGGTGCTTCCATTGCTGCCATTaGTCAAAACGTTTCTGGAGCTCTTTGTTGGGCACT | + |
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Preference number: 6 (lower is better) Translates to: CHLLCRCFHCCH*SKRFWSSLLGT Trigger: AGTGCCCAACAAAGAGCTCCAGAAACGTTTTGAGCAATGGCAGCAATGGAAGCACCTACACAATAAGTGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000650406.1 ENST00000662449.1 |
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| CDS GCA 72 bp | GGAGGTGGCAAGCCATCTTCCTTTAGCATCCTTCAGTaGTCATTGCTTTCCAAAAACCAGCAATTTAAAATT | + |
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Preference number: 6 (lower is better) Translates to: GGGKPSSFSILQ*SLLSKNQQFKI Trigger: AATTTTAAATTGCTGGTTTTTGGAAAGCAATGAGCACTGAAGGATGCTAAAGGAAGATGGCTTGCCACCTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000650406.1 ENST00000662449.1 |
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| CDS CAA 90 bp | CAAATTCAACTCCAGCTGAGACTTAAAGGAGAAGAAGAAGCTGACTaGAGTTCTACAGATTGGCTTAATCGGTCAGCTATGAACATTTTC | + |
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Preference number: 6 (lower is better) Translates to: QIQLQLRLKGEEEAD*SSTDWLNRSAMNIF Trigger: GAAAATGTTCATAGCTGACCGATTAAGCCAATCTGTAGAACTCAAGTCAGCTTCTTCTTCTCCTTTAAGTCTCAGCTGGAGTTGAATTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000650406.1 ENST00000662449.1 |
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| CDS GCA 72 bp | GGGCTGAAACGGTATAACCAAGGTCTAACTAATGTCTaGATGTTAACAACTACACCAGAACTTACACAAACA | + |
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Preference number: 6 (lower is better) Translates to: GLKRYNQGLTNV*MLTTTPELTQT Trigger: TGTTTGTGTAAGTTCTGGTGTAGTTGTTAACATGCAGACATTAGTTAGACCTTGGTTATACCGTTTCAGCCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650406.1 ENST00000662449.1 |
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