Pregenerated sensors for LINC02778 (Homo sapiens)
Ensembl gene IDs: ENSG00000238242Ensembl transcript IDs: ENST00000456878.1, ENST00000659925.1
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CAGCCTGGCACAGGGCCTGCAGTCCGGCTCCCAGGGATGATTAAATaGATGGCAGCAGGTGGCAGGGACTCCCAGACATGCTTACCCTGC | + |
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Preference number: 5 (lower is better) Translates to: QPGTGPAVRLPGMIK*MAAGGRDSQTCLPC Trigger: GCAGGGTAAGCATGTCTGGGAGTCCCTGCCACCTGCTGCCATTCATTTAATCATCCCTGGGAGCCGGACTGCAGGCCCTGTGCCAGGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS TCA 90 bp | TCGACCTGGGCGTTTGATCTACCGGCCTGCTTTTCTGACACATGCTaGGGCAGGAGGGTCCCTCGCACCAAGGAGTTTGAGGCTGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: STWAFDLPACFSDTC*GRRVPRTKEFEAAV Trigger: CACTGCAGCCTCAAACTCCTTGGTGCGAGGGACCCTCCTGCCTCAGCATGTGTCAGAAAAGCAGGCCGGTAGATCAAACGCCCAGGTCGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS TCA 90 bp | CATCATACATTTCAGTTCTGCCTTACTTTTCCTCCTGCTGACTGCTaGGATCAGCCATTGCTTCCTGTTCCTCCAGTCCCCAGTTCACAC | + |
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Preference number: 5 (lower is better) Translates to: HHTFQFCLTFPPADC*DQPLLPVPPVPSSH Trigger: GTGTGAACTGGGGACTGGAGGAACAGGAAGCAATGGCTGATCTCAGCAGTCAGCAGGAGGAAAAGTAAGGCAGAACTGAAATGTATGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS CCA 90 bp | CTGTGTTTCTTCCCATCCCCGTTCTGGTGCATAAACAGGTGGAGCTaGTGCTCTAGAACATGTGAATCAATGAGACATTGCTGTCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: LCFFPSPFWCINRWS*CSRTCESMRHCCPV Trigger: GACTGGACAGCAATGTCTCATTGATTCACATGTTCTAGAGCACCAGCTCCACCTGTTTATGCACCAGAACGGGGATGGGAAGAAACACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS TCA 90 bp | AGGTGGCTTCTGCTCTATTATTTCTCCAACCTCTCCAGTTCCTGTTaGGGATTTCCCGCTGCCTTTGGATTCTCAGCACCAGATGGTTTT | + |
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Preference number: 5 (lower is better) Translates to: RWLLLYYFSNLSSSC*GFPAAFGFSAPDGF Trigger: AAAACCATCTGGTGCTGAGAATCCAAAGGCAGCGGGAAATCCTCAACAGGAACTGGAGAGGTTGGAGAAATAATAGAGCAGAAGCCACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS TCA 90 bp | GTAAACACATCATACATTTCAGTTCTGCCTTACTTTTCCTCCTGCTaGCTGCTGAGATCAGCCATTGCTTCCTGTTCCTCCAGTCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: VNTSYISVLPYFSSC*LLRSAIASCSSSPQ Trigger: CTGGGGACTGGAGGAACAGGAAGCAATGGCTGATCTCAGCAGTCAGCAGGAGGAAAAGTAAGGCAGAACTGAAATGTATGATGTGTTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS GCA 90 bp | TGTTTCTTCCCATCCCCGTTCTGGTGCATAAACAGGTGGAGCTGGTaGTCTAGAACATGTGAATCAATGAGACATTGCTGTCCAGTCTCT | + |
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Preference number: 5 (lower is better) Translates to: CFFPSPFWCINRWSW*SRTCESMRHCCPVS Trigger: AGAGACTGGACAGCAATGTCTCATTGATTCACATGTTCTAGAGCACCAGCTCCACCTGTTTATGCACCAGAACGGGGATGGGAAGAAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS CCA 90 bp | TTCCTGTTGAGGATTTCCCGCTGCCTTTGGATTCTCAGCACCAGATaGTTTTTCTTTAACCTATGGTTGGTCCCAGGAGCCTCATTATGG | + |
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Preference number: 5 (lower is better) Translates to: FLLRISRCLWILSTR*FFFNLWLVPGASLW Trigger: CCATAATGAGGCTCCTGGGACCAACCATAGGTTAAAGAAAAACCATCTGGTGCTGAGAATCCAAAGGCAGCGGGAAATCCTCAACAGGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS CCA 90 bp | CAAAGGCTGTGTTTCTTCCCATCCCCGTTCTGGTGCATAAACAGGTaGAGCTGGTGCTCTAGAACATGTGAATCAATGAGACATTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: QRLCFFPSPFWCINR*SWCSRTCESMRHCC Trigger: ACAGCAATGTCTCATTGATTCACATGTTCTAGAGCACCAGCTCCACCTGTTTATGCACCAGAACGGGGATGGGAAGAAACACAGCCTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS CCA 90 bp | GGATTTGCAAACATCCAAAGGCTGTGTTTCTTCCCATCCCCGTTCTaGTGCATAAACAGGTGGAGCTGGTGCTCTAGAACATGTGAATCA | + |
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Preference number: 5 (lower is better) Translates to: GFANIQRLCFFPSPF*CINRWSWCSRTCES Trigger: TGATTCACATGTTCTAGAGCACCAGCTCCACCTGTTTATGCACCAGAACGGGGATGGGAAGAAACACAGCCTTTGGATGTTTGCAAATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS GCA 90 bp | TTTGCAAACATCCAAAGGCTGTGTTTCTTCCCATCCCCGTTCTGGTaGATAAACAGGTGGAGCTGGTGCTCTAGAACATGTGAATCAATG | + |
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Preference number: 5 (lower is better) Translates to: FANIQRLCFFPSPFW*INRWSWCSRTCESM Trigger: CATTGATTCACATGTTCTAGAGCACCAGCTCCACCTGTTTATGCACCAGAACGGGGATGGGAAGAAACACAGCCTTTGGATGTTTGCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS CCA 90 bp | TTTCTCCAACCTCTCCAGTTCCTGTTGAGGATTTCCCGCTGCCTTTaGATTCTCAGCACCAGATGGTTTTTCTTTAACCTATGGTTGGTC | + |
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Preference number: 5 (lower is better) Translates to: FLQPLQFLLRISRCL*ILSTRWFFFNLWLV Trigger: GACCAACCATAGGTTAAAGAAAAACCATCTGGTGCTGAGAATCCAAAGGCAGCGGGAAATCCTCAACAGGAACTGGAGAGGTTGGAGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS TCA 90 bp | TCTTTAACCTATGGTTGGTCCCAGGAGCCTCATTATGGTCATTCTTaGCTCCAGCTTAATTTAGATGCCTCTCCTTTGTGTCCTCCCACA | + |
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Preference number: 5 (lower is better) Translates to: SLTYGWSQEPHYGHS*LQLNLDASPLCPPT Trigger: TGTGGGAGGACACAAAGGAGAGGCATCTAAATTAAGCTGGAGTCAAGAATGACCATAATGAGGCTCCTGGGACCAACCATAGGTTAAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456878.1 |
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| CDS GCA 90 bp | CTTTGTCAAGAAGTAAAATCATTCTTCCTCTTCTACCCTTCTATGTaGAATGCAGCTAACAACCTGCCCTGTTGTTTGGGCCCCTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: LCQEVKSFFLFYPSM*NAANNLPCCLGPCF Trigger: GAAGCAGGGGCCCAAACAACAGGGCAGGTTGTTAGCTGCATTGCACATAGAAGGGTAGAAGAGGAAGAATGATTTTACTTCTTGACAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS CCA 90 bp | AGATGGTTTTTCTTTAACCTATGGTTGGTCCCAGGAGCCTCATTATaGTCATTCGGGATTTGCAAACATCCAAAGGCTGTGTTTCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: RWFFFNLWLVPGASL*SFGICKHPKAVFLP Trigger: GGGAAGAAACACAGCCTTTGGATGTTTGCAAATCCCGAATGACCATAATGAGGCTCCTGGGACCAACCATAGGTTAAAGAAAAACCATCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS TCA 72 bp | ACAGGGCCTGCAGTCCGGCTCCCAGGGATGATTAAATaGATGGCAGCAGGTGGCAGGGACTCCCAGACATGC | + |
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Preference number: 6 (lower is better) Translates to: TGPAVRLPGMIK*MAAGGRDSQTC Trigger: GCATGTCTGGGAGTCCCTGCCACCTGCTGCCATTCATTTAATCATCCCTGGGAGCCGGACTGCAGGCCCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS TCA 72 bp | GGAGGGTCCCTCGCACCAAGGAGTTTGAGGCTGCAGTaGGCTCGCTATGATCACGCCACTTCACTCCAGCAT | + |
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Preference number: 6 (lower is better) Translates to: GGSLAPRSLRLQ*ARYDHATSLQH Trigger: ATGCTGGAGTGAAGTGGCGTGATCATAGCGAGCTCACTGCAGCCTCAAACTCCTTGGTGCGAGGGACCCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS TCA 72 bp | ATGCTGAGGCAGGAGGGTCCCTCGCACCAAGGAGTTTaGGGCTGCAGTGAGCTCGCTATGATCACGCCACTT | + |
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Preference number: 6 (lower is better) Translates to: MLRQEGPSHQGV*GCSELAMITPL Trigger: AAGTGGCGTGATCATAGCGAGCTCACTGCAGCCTCAAACTCCTTGGTGCGAGGGACCCTCCTGCCTCAGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS TCA 72 bp | CTGGTGGGCAGGCCCTGGTATCTAATAGCTGCTGAGTaGGCTCTCTCCTTGCCAGTTTCTGCTGCTGACAGC | + |
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Preference number: 6 (lower is better) Translates to: LVGRPWYLIAAE*ALSLPVSAADS Trigger: GCTGTCAGCAGCAGAAACTGGCAAGGAGAGAGCTCACTCAGCAGCTATTAGATACCAGGGCCTGCCCACCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS TCA 72 bp | GCGTTTGATCTACCGGCCTGCTTTTCTGACACATGCTaGGGCAGGAGGGTCCCTCGCACCAAGGAGTTTGAG | + |
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Preference number: 6 (lower is better) Translates to: AFDLPACFSDTC*GRRVPRTKEFE Trigger: CTCAAACTCCTTGGTGCGAGGGACCCTCCTGCCTCAGCATGTGTCAGAAAAGCAGGCCGGTAGATCAAACGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS GCA 72 bp | TCTTCTACCCTTCTATGTGCAATGCAGCTAACAACCTaGCCTGTTGTTTGGGCCCCTGCTTCCAGGTGGCTT | + |
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Preference number: 6 (lower is better) Translates to: SSTLLCAMQLTT*PVVWAPASRWL Trigger: AAGCCACCTGGAAGCAGGGGCCCAAACAACAGGGCAGGTTGTTAGCTGCATTGCACATAGAAGGGTAGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS GCA 72 bp | GCAGCAGGTGGCAGGGACTCCCAGACATGCTTACCCTaGAGACGTCTTTCCTTCTTCTTCTTTGTCAAGAAG | + |
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Preference number: 6 (lower is better) Translates to: AAGGRDSQTCLP*RRLSFFFFVKK Trigger: CTTCTTGACAAAGAAGAAGAAGGAAAGACGTCTGCAGGGTAAGCATGTCTGGGAGTCCCTGCCACCTGCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS TCA 72 bp | TTTCAGTTCTGCCTTACTTTTCCTCCTGCTGACTGCTaGGATCAGCCATTGCTTCCTGTTCCTCCAGTCCCC | + |
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Preference number: 6 (lower is better) Translates to: FQFCLTFPPADC*DQPLLPVPPVP Trigger: GGGGACTGGAGGAACAGGAAGCAATGGCTGATCTCAGCAGTCAGCAGGAGGAAAAGTAAGGCAGAACTGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS GCA 72 bp | ATCCAAAGGCTGTGTTTCTTCCCATCCCCGTTCTGGTaGATAAACAGGTGGAGCTGGTGCTCTAGAACATGT | + |
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Preference number: 6 (lower is better) Translates to: IQRLCFFPSPFW*INRWSWCSRTC Trigger: ACATGTTCTAGAGCACCAGCTCCACCTGTTTATGCACCAGAACGGGGATGGGAAGAAACACAGCCTTTGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS CCA 72 bp | AGGATTTCCCGCTGCCTTTGGATTCTCAGCACCAGATaGTTTTTCTTTAACCTATGGTTGGTCCCAGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: RISRCLWILSTR*FFFNLWLVPGA Trigger: GGCTCCTGGGACCAACCATAGGTTAAAGAAAAACCATCTGGTGCTGAGAATCCAAAGGCAGCGGGAAATCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS CAA 90 bp | CAGGTGGCTTCTGCTCTATTATTTCTCCAACCTCTCCAGTTCCTGTaGAGGATTTCCCGCTGCCTTTGGATTCTCAGCACCAGATGGTTT | + |
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Preference number: 6 (lower is better) Translates to: QVASALLFLQPLQFL*RISRCLWILSTRWF Trigger: AAACCATCTGGTGCTGAGAATCCAAAGGCAGCGGGAAATCCTCAACAGGAACTGGAGAGGTTGGAGAAATAATAGAGCAGAAGCCACCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS TCA 72 bp | CTGCTCTATTATTTCTCCAACCTCTCCAGTTCCTGTTaGGGATTTCCCGCTGCCTTTGGATTCTCAGCACCA | + |
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Preference number: 6 (lower is better) Translates to: LLYYFSNLSSSC*GFPAAFGFSAP Trigger: TGGTGCTGAGAATCCAAAGGCAGCGGGAAATCCTCAACAGGAACTGGAGAGGTTGGAGAAATAATAGAGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS GCA 72 bp | CCATCCCCGTTCTGGTGCATAAACAGGTGGAGCTGGTaGTCTAGAACATGTGAATCAATGAGACATTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: PSPFWCINRWSW*SRTCESMRHCC Trigger: ACAGCAATGTCTCATTGATTCACATGTTCTAGAGCACCAGCTCCACCTGTTTATGCACCAGAACGGGGATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS CCA 72 bp | TTCCCATCCCCGTTCTGGTGCATAAACAGGTGGAGCTaGTGCTCTAGAACATGTGAATCAATGAGACATTGC | + |
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Preference number: 6 (lower is better) Translates to: FPSPFWCINRWS*CSRTCESMRHC Trigger: GCAATGTCTCATTGATTCACATGTTCTAGAGCACCAGCTCCACCTGTTTATGCACCAGAACGGGGATGGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS CAA 72 bp | TCTGCTCTATTATTTCTCCAACCTCTCCAGTTCCTGTaGAGGATTTCCCGCTGCCTTTGGATTCTCAGCACC | + |
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Preference number: 6 (lower is better) Translates to: SALLFLQPLQFL*RISRCLWILST Trigger: GGTGCTGAGAATCCAAAGGCAGCGGGAAATCCTCAACAGGAACTGGAGAGGTTGGAGAAATAATAGAGCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS TCA 72 bp | TCATACATTTCAGTTCTGCCTTACTTTTCCTCCTGCTaGCTGCTGAGATCAGCCATTGCTTCCTGTTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SYISVLPYFSSC*LLRSAIASCSS Trigger: GGAGGAACAGGAAGCAATGGCTGATCTCAGCAGTCAGCAGGAGGAAAAGTAAGGCAGAACTGAAATGTATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS CCA 72 bp | CCTCTCCAGTTCCTGTTGAGGATTTCCCGCTGCCTTTaGATTCTCAGCACCAGATGGTTTTTCTTTAACCTA | + |
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Preference number: 6 (lower is better) Translates to: PLQFLLRISRCL*ILSTRWFFFNL Trigger: TAGGTTAAAGAAAAACCATCTGGTGCTGAGAATCCAAAGGCAGCGGGAAATCCTCAACAGGAACTGGAGAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS CCA 72 bp | TGTTTCTTCCCATCCCCGTTCTGGTGCATAAACAGGTaGAGCTGGTGCTCTAGAACATGTGAATCAATGAGA | + |
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Preference number: 6 (lower is better) Translates to: CFFPSPFWCINR*SWCSRTCESMR Trigger: TCTCATTGATTCACATGTTCTAGAGCACCAGCTCCACCTGTTTATGCACCAGAACGGGGATGGGAAGAAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS CCA 72 bp | TTCTTTAACCTATGGTTGGTCCCAGGAGCCTCATTATaGTCATTCGGGATTTGCAAACATCCAAAGGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: FFNLWLVPGASL*SFGICKHPKAV Trigger: CACAGCCTTTGGATGTTTGCAAATCCCGAATGACCATAATGAGGCTCCTGGGACCAACCATAGGTTAAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS TCA 72 bp | TATGGTTGGTCCCAGGAGCCTCATTATGGTCATTCTTaGCTCCAGCTTAATTTAGATGCCTCTCCTTTGTGT | + |
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Preference number: 6 (lower is better) Translates to: YGWSQEPHYGHS*LQLNLDASPLC Trigger: ACACAAAGGAGAGGCATCTAAATTAAGCTGGAGTCAAGAATGACCATAATGAGGCTCCTGGGACCAACCATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456878.1 |
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| CDS GCA 72 bp | GAAGTAAAATCATTCTTCCTCTTCTACCCTTCTATGTaGAATGCAGCTAACAACCTGCCCTGTTGTTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: EVKSFFLFYPSM*NAANNLPCCLG Trigger: GCCCAAACAACAGGGCAGGTTGTTAGCTGCATTGCACATAGAAGGGTAGAAGAGGAAGAATGATTTTACTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS CCA 72 bp | TTCTCAGCACCAGATGGTTTTTCTTTAACCTATGGTTaGTCCCAGGAGCCTCATTATGGTCATTCGGGATTT | + |
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Preference number: 6 (lower is better) Translates to: FSAPDGFSLTYG*SQEPHYGHSGF Trigger: AAATCCCGAATGACCATAATGAGGCTCCTGGGACCAACCATAGGTTAAAGAAAAACCATCTGGTGCTGAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS CAA 72 bp | ATTCTCAGCACCAGATGGTTTTTCTTTAACCTATGGTaGGTCCCAGGAGCCTCATTATGGTCATTCGGGATT | + |
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Preference number: 6 (lower is better) Translates to: ILSTRWFFFNLW*VPGASLWSFGI Trigger: AATCCCGAATGACCATAATGAGGCTCCTGGGACCAACCATAGGTTAAAGAAAAACCATCTGGTGCTGAGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS CCA 72 bp | ACATCTATTATGACATTAACTTCAAAGCATTCGACCTaGGCGTTTGATCTACCGGCCTGCTTTTCTGACACA | + |
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Preference number: 6 (lower is better) Translates to: TSIMTLTSKHST*AFDLPACFSDT Trigger: TGTGTCAGAAAAGCAGGCCGGTAGATCAAACGCCCAGGTCGAATGCTTTGAAGTTAATGTCATAATAGATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS CAA 72 bp | ATTCTCAGCACCAGATGGTTTTTCTTTAACCTATGGTaGGTCCCAGGAGCCTCATTATGGTCATTCTTGACT | + |
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Preference number: 6 (lower is better) Translates to: ILSTRWFFFNLW*VPGASLWSFLT Trigger: AGTCAAGAATGACCATAATGAGGCTCCTGGGACCAACCATAGGTTAAAGAAAAACCATCTGGTGCTGAGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000456878.1 |
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| CDS CAA 90 bp | ACTCCCAGACATGCTTACCCTGCAGACGTCTTTCCTTCTTCTTCTTaGTCAAGAAGTAAAATCATTCTTCCTCTTCTACCCTTCTATGTG | + |
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Preference number: 6 (lower is better) Translates to: TPRHAYPADVFPSSS*SRSKIILPLLPFYV Trigger: CACATAGAAGGGTAGAAGAGGAAGAATGATTTTACTTCTTGACAAAGAAGAAGAAGGAAAGACGTCTGCAGGGTAAGCATGTCTGGGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456878.1 ENST00000659925.1 |
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| CDS GCA 72 bp | AGCTGGTGCTCTAGAACATGTGAATCAATGAGACATTaGTGTCCAGTCTCTAAATGGTTAATATTCTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: SWCSRTCESMRH*CPVSKWLIFLP Trigger: AGGCAAGAATATTAACCATTTAGAGACTGGACAGCAATGTCTCATTGATTCACATGTTCTAGAGCACCAGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS CAA 72 bp | ATGGTTAATATTCTTGCCTGCTCCTGTTCAAGCTTCTaGGAAGAAGGTGTTGGATCTTTGTGCTATAACATC | + |
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Preference number: 6 (lower is better) Translates to: MVNILACSCSSF*EEGVGSLCYNI Trigger: GATGTTATAGCACAAAGATCCAACACCTTCTTCCAAGAAGCTTGAACAGGAGCAGGCAAGAATATTAACCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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| CDS CAA 90 bp | TTAATATTCTTGCCTGCTCCTGTTCAAGCTTCTTGGAAGAAGGTGTaGGATCTTTGTGCTATAACATCTATTATGACATTAACTTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: LIFLPAPVQASWKKV*DLCAITSIMTLTSK Trigger: CTTTGAAGTTAATGTCATAATAGATGTTATAGCACAAAGATCCAACACCTTCTTCCAAGAAGCTTGAACAGGAGCAGGCAAGAATATTAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659925.1 |
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