Pregenerated sensors for LINC02771 (Homo sapiens)
Ensembl gene IDs: ENSG00000224535Ensembl transcript IDs: ENST00000439570.2, ENST00000661486.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GACCCAGGTGTCTTCCCAGGGGAAGTGGAACAAGGGTGGCCTGCCTaGTCCAGGACGTCAGCTGAGCAGGAGGCCTGGAAGAGGGGAACT | + |
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Preference number: 5 (lower is better) Translates to: DPGVFPGEVEQGWPA*SRTSAEQEAWKRGT Trigger: AGTTCCCCTCTTCCAGGCCTCCTGCTCAGCTGACGTCCTGGACCAGGCAGGCCACCCTTGTTCCACTTCCCCTGGGAAGACACCTGGGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000439570.2 ENST00000661486.1 |
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| CDS CCA 90 bp | CAGGCACAAGACCCAGGTGTCTTCCCAGGGGAAGTGGAACAAGGGTaGCCTGCCTGGTCCAGGACGTCAGCTGAGCAGGAGGCCTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: QAQDPGVFPGEVEQG*PAWSRTSAEQEAWK Trigger: CTTCCAGGCCTCCTGCTCAGCTGACGTCCTGGACCAGGCAGGCCACCCTTGTTCCACTTCCCCTGGGAAGACACCTGGGTCTTGTGCCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000439570.2 ENST00000661486.1 |
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| CDS TCA 90 bp | GTGGCCCTGGGCCTCCTGAGATGGCTCCAGGGGTTTGGAGGAAGGTaGGCTTTTCTGTTAGGCATAACATTGGACCTTTCAGAGTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: VALGLLRWLQGFGGR*AFLLGITLDLSESA Trigger: GGCTGACTCTGAAAGGTCCAATGTTATGCCTAACAGAAAAGCTCACCTTCCTCCAAACCCCTGGAGCCATCTCAGGAGGCCCAGGGCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439570.2 |
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| CDS TCA 90 bp | TCAGGAGGGCTCACATTAGTGGTAGGCTGGGAAATACCCCACAAGTaGTGGAAAAGAAGCAGATGGCAGATCAGGAACTGGATGTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: SGGLTLVVGWEIPHK*WKRSRWQIRNWMWQ Trigger: CTGCCACATCCAGTTCCTGATCTGCCATCTGCTTCTTTTCCATCACTTGTGGGGTATTTCCCAGCCTACCACTAATGTGAGCCCTCCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000439570.2 ENST00000661486.1 |
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| CDS TCA 90 bp | GATGTGGCAGTTAGGGTGACCTTTCTAGAGGTGCCTGGTTCTGGCTaGAATGGAGTCGAGTTTGGATTAAATGAGCCTAAATCCATCAGT | + |
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Preference number: 5 (lower is better) Translates to: DVAVRVTFLEVPGSG*NGVEFGLNEPKSIS Trigger: ACTGATGGATTTAGGCTCATTTAATCCAAACTCGACTCCATTTCAGCCAGAACCAGGCACCTCTAGAAAGGTCACCCTAACTGCCACATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000439570.2 ENST00000661486.1 |
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| CDS CCA 72 bp | GTCTTCCCAGGGGAAGTGGAACAAGGGTGGCCTGCCTaGTCCAGGACGTCAGCTGAGCAGGAGGCCTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: VFPGEVEQGWPA*SRTSAEQEAWK Trigger: CTTCCAGGCCTCCTGCTCAGCTGACGTCCTGGACCAGGCAGGCCACCCTTGTTCCACTTCCCCTGGGAAGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000439570.2 ENST00000661486.1 |
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| CDS CCA 72 bp | GACCCAGGTGTCTTCCCAGGGGAAGTGGAACAAGGGTaGCCTGCCTGGTCCAGGACGTCAGCTGAGCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: DPGVFPGEVEQG*PAWSRTSAEQE Trigger: CTCCTGCTCAGCTGACGTCCTGGACCAGGCAGGCCACCCTTGTTCCACTTCCCCTGGGAAGACACCTGGGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000439570.2 ENST00000661486.1 |
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| CDS CAA 90 bp | CATCAGTGGAGTTGGATGGGTGACCTGAACCCAGAGATGATCTTCTaGTGTAGGGGGAGGATTGGTGAGAAAGCTGGAGTGAGGACTCTG | + |
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Preference number: 6 (lower is better) Translates to: HQWSWMGDLNPEMIF*CRGRIGEKAGVRTL Trigger: CAGAGTCCTCACTCCAGCTTTCTCACCAATCCTCCCCCTACACAAGAAGATCATCTCTGGGTTCAGGTCACCCATCCAACTCCACTGATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000439570.2 ENST00000661486.1 |
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| CDS TCA 72 bp | GGCCTCCTGAGATGGCTCCAGGGGTTTGGAGGAAGGTaGGCTTTTCTGTTAGGCATAACATTGGACCTTTCA | + |
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Preference number: 6 (lower is better) Translates to: GLLRWLQGFGGR*AFLLGITLDLS Trigger: TGAAAGGTCCAATGTTATGCCTAACAGAAAAGCTCACCTTCCTCCAAACCCCTGGAGCCATCTCAGGAGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439570.2 |
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| CDS CAA 72 bp | AGTTGGATGGGTGACCTGAACCCAGAGATGATCTTCTaGTGTAGGGGGAGGATTGGTGAGAAAGCTGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: SWMGDLNPEMIF*CRGRIGEKAGV Trigger: CACTCCAGCTTTCTCACCAATCCTCCCCCTACACAAGAAGATCATCTCTGGGTTCAGGTCACCCATCCAACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000439570.2 ENST00000661486.1 |
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| CDS TCA 72 bp | CTCACATTAGTGGTAGGCTGGGAAATACCCCACAAGTaGTGGAAAAGAAGCAGATGGCAGATCAGGAACTGG | + |
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Preference number: 6 (lower is better) Translates to: LTLVVGWEIPHK*WKRSRWQIRNW Trigger: CCAGTTCCTGATCTGCCATCTGCTTCTTTTCCATCACTTGTGGGGTATTTCCCAGCCTACCACTAATGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000439570.2 ENST00000661486.1 |
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| CDS TCA 72 bp | GTTAGGGTGACCTTTCTAGAGGTGCCTGGTTCTGGCTaGAATGGAGTCGAGTTTGGATTAAATGAGCCTAAA | + |
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Preference number: 6 (lower is better) Translates to: VRVTFLEVPGSG*NGVEFGLNEPK Trigger: TTTAGGCTCATTTAATCCAAACTCGACTCCATTTCAGCCAGAACCAGGCACCTCTAGAAAGGTCACCCTAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000439570.2 ENST00000661486.1 |
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