Pregenerated sensors for LINC02770 (Homo sapiens)
Ensembl gene IDs: ENSG00000228215Ensembl transcript IDs: ENST00000430776.2, ENST00000664489.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGTAAGGATGAAGTTCAGAATCATGTGTTAGGCAATCCTCTTCCATaGGACCCCCTCATCCAGCTAAGGCTGCTAGGCCCACTCCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: CKDEVQNHVLGNPLP*DPLIQLRLLGPLLE Trigger: CTCCAGGAGTGGGCCTAGCAGCCTTAGCTGGATGAGGGGGTCCCATGGAAGAGGATTGCCTAACACATGATTCTGAACTTCATCCTTACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000430776.2 ENST00000664489.1 |
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| CDS TCA 90 bp | TTCTTCAGGAGGTATTCCAGCAGGAGGTGGTGTTATTATAGGAGATaGCACAGCTGCATGGACATATTGTCCACGAAGACCTTCCAAAGT | + |
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Preference number: 5 (lower is better) Translates to: FFRRYSSRRWCYYRR*HSCMDILSTKTFQS Trigger: ACTTTGGAAGGTCTTCGTGGACAATATGTCCATGCAGCTGTGTCATCTCCTATAATAACACCACCTCCTGCTGGAATACCTCCTGAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430776.2 ENST00000664489.1 |
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| CDS CCA 72 bp | GAAGTTCAGAATCATGTGTTAGGCAATCCTCTTCCATaGGACCCCCTCATCCAGCTAAGGCTGCTAGGCCCA | + |
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Preference number: 6 (lower is better) Translates to: EVQNHVLGNPLP*DPLIQLRLLGP Trigger: TGGGCCTAGCAGCCTTAGCTGGATGAGGGGGTCCCATGGAAGAGGATTGCCTAACACATGATTCTGAACTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000430776.2 ENST00000664489.1 |
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| CDS TCA 72 bp | AGGTATTCCAGCAGGAGGTGGTGTTATTATAGGAGATaGCACAGCTGCATGGACATATTGTCCACGAAGACC | + |
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Preference number: 6 (lower is better) Translates to: RYSSRRWCYYRR*HSCMDILSTKT Trigger: GGTCTTCGTGGACAATATGTCCATGCAGCTGTGTCATCTCCTATAATAACACCACCTCCTGCTGGAATACCT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430776.2 ENST00000664489.1 |
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| CDS TCA 72 bp | TCCTCCCTTCAGTCTGCAAAGTTTCGTAGAGCTCAGTaGATAAAGCTGATAAACTGGAAAGCGGTCTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: SSLQSAKFRRAQ*IKLINWKAVWR Trigger: CCTCCAGACCGCTTTCCAGTTTATCAGCTTTATTCACTGAGCTCTACGAAACTTTGCAGACTGAAGGGAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664489.1 |
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| CDS CCA 72 bp | GGAGGTGGTGTTATTATAGGAGATGACACAGCTGCATaGACATATTGTCCACGAAGACCTTCCAAAGTTAGG | + |
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Preference number: 6 (lower is better) Translates to: GGGVIIGDDTAA*TYCPRRPSKVR Trigger: CCTAACTTTGGAAGGTCTTCGTGGACAATATGTCCATGCAGCTGTGTCATCTCCTATAATAACACCACCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430776.2 ENST00000664489.1 |
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| CDS CAA 72 bp | CAAATGATCCTGTTGCTGCCAGTGCAGGGATCATCTTaGAGAACCACTATGCACAAAGGTTGGGACAAAGAT | + |
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Preference number: 6 (lower is better) Translates to: QMILLLPVQGSS*RTTMHKGWDKD Trigger: ATCTTTGTCCCAACCTTTGTGCATAGTGGTTCTCAAAGATGATCCCTGCACTGGCAGCAACAGGATCATTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430776.2 ENST00000664489.1 |
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| CDS TCA 72 bp | AACATTAGCTTGGATCAAAATTACCTAAAGGGCTTGTaGAACCACAGGCTAATGGGCCTCATGTGCAGAGTT | + |
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Preference number: 6 (lower is better) Translates to: NISLDQNYLKGL*NHRLMGLMCRV Trigger: AACTCTGCACATGAGGCCCATTAGCCTGTGGTTTCACAAGCCCTTTAGGTAATTTTGATCCAAGCTAATGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000430776.2 ENST00000664489.1 |
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| CDS CAA 72 bp | GAGTTTGCTTTTCAAACAAGATCTCAAATGATCCTGTaGCTGCCAGTGCAGGGATCATCTTTGAGAACCACT | + |
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Preference number: 6 (lower is better) Translates to: EFAFQTRSQMIL*LPVQGSSLRTT Trigger: AGTGGTTCTCAAAGATGATCCCTGCACTGGCAGCAACAGGATCATTTGAGATCTTGTTTGAAAAGCAAACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000430776.2 ENST00000664489.1 |
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| CDS CAA 90 bp | ACAAGATCTCAAATGATCCTGTTGCTGCCAGTGCAGGGATCATCTTaGAGAACCACTATGCACAAAGGTTGGGACAAAGATTATTTACCA | + |
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Preference number: 6 (lower is better) Translates to: TRSQMILLLPVQGSS*RTTMHKGWDKDYLP Trigger: TGGTAAATAATCTTTGTCCCAACCTTTGTGCATAGTGGTTCTCAAAGATGATCCCTGCACTGGCAGCAACAGGATCATTTGAGATCTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430776.2 ENST00000664489.1 |
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| CDS CAA 90 bp | GTTTCCTCAGAGTTTGCTTTTCAAACAAGATCTCAAATGATCCTGTaGCTGCCAGTGCAGGGATCATCTTTGAGAACCACTATGCACAAA | + |
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Preference number: 6 (lower is better) Translates to: VSSEFAFQTRSQMIL*LPVQGSSLRTTMHK Trigger: TTTGTGCATAGTGGTTCTCAAAGATGATCCCTGCACTGGCAGCAACAGGATCATTTGAGATCTTGTTTGAAAAGCAAACTCTGAGGAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000430776.2 ENST00000664489.1 |
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| CDS CCA 72 bp | CAGGGATCATCTTTGAGAACCACTATGCACAAAGGTTaGGACAAAGATTATTTACCACTTAGCTTCAAACAT | + |
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Preference number: 6 (lower is better) Translates to: QGSSLRTTMHKG*DKDYLPLSFKH Trigger: ATGTTTGAAGCTAAGTGGTAAATAATCTTTGTCCCAACCTTTGTGCATAGTGGTTCTCAAAGATGATCCCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430776.2 ENST00000664489.1 |
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| CDS CAA 72 bp | AAGATATATCACTCTGGGATGGAGGATTTCAATGGTTaGAATGATGATGTTCCCTTCAACATTTTTGTTGAA | + |
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Preference number: 6 (lower is better) Translates to: KIYHSGMEDFNG*NDDVPFNIFVE Trigger: TTCAACAAAAATGTTGAAGGGAACATCATCATTCAAACCATTGAAATCCTCCATCCCAGAGTGATATATCTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000430776.2 |
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