Pregenerated sensors for LINC02768 (Homo sapiens)
Ensembl gene IDs: ENSG00000229291Ensembl transcript IDs: ENST00000443207.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCAGAACACAGAATTCAACCAAGGGACCAATATGAAGAAAGCTCTTaGGTGGGACGATGGGAAGGCCCGAGCATAGCTTCTTTTGGGGAA | + |
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Preference number: 5 (lower is better) Translates to: SEHRIQPRDQYEESS*VGRWEGPSIASFGE Trigger: TTCCCCAAAAGAAGCTATGCTCGGGCCTTCCCATCGTCCCACTCAAGAGCTTTCTTCATATTGGTCCCTTGGTTGAATTCTGTGTTCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000443207.1 |
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| CDS CCA 90 bp | TTTTTGTGCATCGATTTTTCCAGTGTTCTGAGATCTTGTTACTGGTaGCGAATCCATACAGGTCTGCAGCAACCTCAATTCTTGCCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: FLCIDFSSVLRSCYW*RIHTGLQQPQFLPL Trigger: AAGAGGCAAGAATTGAGGTTGCTGCAGACCTGTATGGATTCGCCACCAGTAACAAGATCTCAGAACACTGGAAAAATCGATGCACAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000443207.1 |
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| CDS TCA 72 bp | AGAATTCAACCAAGGGACCAATATGAAGAAAGCTCTTaGGTGGGACGATGGGAAGGCCCGAGCATAGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: RIQPRDQYEESS*VGRWEGPSIAS Trigger: AGAAGCTATGCTCGGGCCTTCCCATCGTCCCACTCAAGAGCTTTCTTCATATTGGTCCCTTGGTTGAATTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443207.1 |
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| CDS GCA 72 bp | GGCGAATCCATACAGGTCTGCAGCAACCTCAATTCTTaGCTCTTCAGAACACAGAATTCAACCAAGGGACCA | + |
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Preference number: 6 (lower is better) Translates to: GESIQVCSNLNS*LFRTQNSTKGP Trigger: TGGTCCCTTGGTTGAATTCTGTGTTCTGAAGAGGCAAGAATTGAGGTTGCTGCAGACCTGTATGGATTCGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443207.1 |
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| CDS CAA 72 bp | TGGCGAATCCATACAGGTCTGCAGCAACCTCAATTCTaGCCTCTTCAGAACACAGAATTCAACCAAGGGACC | + |
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Preference number: 6 (lower is better) Translates to: WRIHTGLQQPQF*PLQNTEFNQGT Trigger: GGTCCCTTGGTTGAATTCTGTGTTCTGAAGAGGCAAGAATTGAGGTTGCTGCAGACCTGTATGGATTCGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443207.1 |
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| CDS CCA 72 bp | ATCGATTTTTCCAGTGTTCTGAGATCTTGTTACTGGTaGCGAATCCATACAGGTCTGCAGCAACCTCAATTC | + |
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Preference number: 6 (lower is better) Translates to: IDFSSVLRSCYW*RIHTGLQQPQF Trigger: GAATTGAGGTTGCTGCAGACCTGTATGGATTCGCCACCAGTAACAAGATCTCAGAACACTGGAAAAATCGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000443207.1 |
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