Pregenerated sensors for LINC02754 (Homo sapiens)
Ensembl gene IDs: ENSG00000251637Ensembl transcript IDs: ENST00000511677.1, ENST00000529069.5
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCCAGGAGGCAGAGGTTGCTGAAGAGAATACTCCAGAGCAGAGGTTaGGACACTAATGCCCATGGGCCAAATCTGACCTGCTTGTGCATG | + |
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Preference number: 5 (lower is better) Translates to: PRRQRLLKRILQSRG*DTNAHGPNLTCLCM Trigger: CATGCACAAGCAGGTCAGATTTGGCCCATGGGCATTAGTGTCCCAACCTCTGCTCTGGAGTATTCTCTTCAGCAACCTCTGCCTCCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS TCA 90 bp | AGTAGCCCCTCTACTACCACTGAGAGAGGCACAAGTCCCTCCAGGTaGCGAGCGCTCAGCACCCTTCTTAGTTTGTGTCCCTTTTTCTAC | + |
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Preference number: 5 (lower is better) Translates to: SSPSTTTERGTSPSR*RALSTLLSLCPFFY Trigger: GTAGAAAAAGGGACACAAACTAAGAAGGGTGCTGAGCGCTCGTCACCTGGAGGGACTTGTGCCTCTCTCAGTGGTAGTAGAGGGGCTACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000511677.1 ENST00000529069.5 |
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| CDS CCA 90 bp | ACTCAGTCCACATCCCAGGATGCTGGAGGACTGAGTCCTGGTTTCTaGCAGACCGGTCACTCTCTCTCTCTTTCTATCTCTCATCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: TQSTSQDAGGLSPGF*QTGHSLSLSISHLS Trigger: AGAAAGATGAGAGATAGAAAGAGAGAGAGAGTGACCGGTCTGCCAGAAACCAGGACTCAGTCCTCCAGCATCCTGGGATGTGGACTGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS TCA 90 bp | ACATCTGCTGAGCTTCTGTGGAGGCCTCAGGAAACTTACTTACAATaGTGGCAGAAGGTGAAGTGGGAGCAAGAGAGTAAGGAGGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: TSAELLWRPQETYLQ*WQKVKWEQESKEGG Trigger: ACCTCCCTCCTTACTCTCTTGCTCCCACTTCACCTTCTGCCATCATTGTAAGTAAGTTTCCTGAGGCCTCCACAGAAGCTCAGCAGATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS CCA 90 bp | CACAGTCATGTCCATTTGCTACATATTGTCTATGGCTGCTGGATTTaGCTGTTCTCTCATGCTATAAAGAAATACCTGAGACTGGGCAAT | + |
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Preference number: 5 (lower is better) Translates to: HSHVHLLHIVYGCWI*LFSHAIKKYLRLGN Trigger: ATTGCCCAGTCTCAGGTATTTCTTTATAGCATGAGAGAACAGCCAAATCCAGCAGCCATAGACAATATGTAGCAAATGGACATGACTGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS TCA 90 bp | CTTTTCACTGACAGCCCCTTCCTCAAGGACTTAACTTGTGCAAGCTaGCTCTTAGCACATCTAAGAATGCAATTAACTCATAAGATACTG | + |
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Preference number: 5 (lower is better) Translates to: LFTDSPFLKDLTCAS*LLAHLRMQLTHKIL Trigger: CAGTATCTTATGAGTTAATTGCATTCTTAGATGTGCTAAGAGTCAGCTTGCACAAGTTAAGTCCTTGAGGAAGGGGCTGTCAGTGAAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS TCA 90 bp | AATTTATTTGGCATGGTCCAAGTTATCAAACTAGGAGCACTCCATTaGAGTTTCAGGACAAACGCTGTGCTGAATATAAGGATGACCCCA | + |
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Preference number: 5 (lower is better) Translates to: NLFGMVQVIKLGALH*SFRTNAVLNIRMTP Trigger: TGGGGTCATCCTTATATTCAGCACAGCGTTTGTCCTGAAACTTCAATGGAGTGCTCCTAGTTTGATAACTTGGACCATGCCAAATAAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS CCA 90 bp | TTGAAACACAGTCATGTCCATTTGCTACATATTGTCTATGGCTGCTaGATTTGGCTGTTCTCTCATGCTATAAAGAAATACCTGAGACTG | + |
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Preference number: 5 (lower is better) Translates to: LKHSHVHLLHIVYGC*IWLFSHAIKKYLRL Trigger: CAGTCTCAGGTATTTCTTTATAGCATGAGAGAACAGCCAAATCCAGCAGCCATAGACAATATGTAGCAAATGGACATGACTGTGTTTCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS GCA 90 bp | TTTGCTACATATTGTCTATGGCTGCTGGATTTGGCTGTTCTCTCATaGTATAAAGAAATACCTGAGACTGGGCAATATATAAAGAGCTTT | + |
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Preference number: 5 (lower is better) Translates to: FATYCLWLLDLAVLS*YKEIPETGQYIKSF Trigger: AAAGCTCTTTATATATTGCCCAGTCTCAGGTATTTCTTTATAGCATGAGAGAACAGCCAAATCCAGCAGCCATAGACAATATGTAGCAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS CCA 90 bp | AGTTTTATTGAAACACAGTCATGTCCATTTGCTACATATTGTCTATaGCTGCTGGATTTGGCTGTTCTCTCATGCTATAAAGAAATACCT | + |
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Preference number: 5 (lower is better) Translates to: SFIETQSCPFATYCL*LLDLAVLSCYKEIP Trigger: AGGTATTTCTTTATAGCATGAGAGAACAGCCAAATCCAGCAGCCATAGACAATATGTAGCAAATGGACATGACTGTGTTTCAATAAAACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS TCA 72 bp | GCACCTCTGTGTCTCTTTCTAGGAGGGAAGTGGCTCTaGCAGCGGCCCTCCCTTGACTCAGTCCACATCCCA | + |
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Preference number: 6 (lower is better) Translates to: APLCLFLGGKWL*QRPSLDSVHIP Trigger: TGGGATGTGGACTGAGTCAAGGGAGGGCCGCTGTCAGAGCCACTTCCCTCCTAGAAAGAGACACAGAGGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS CCA 72 bp | ACATCCCAGGATGCTGGAGGACTGAGTCCTGGTTTCTaGCAGACCGGTCACTCTCTCTCTCTTTCTATCTCT | + |
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Preference number: 6 (lower is better) Translates to: TSQDAGGLSPGF*QTGHSLSLSIS Trigger: AGAGATAGAAAGAGAGAGAGAGTGACCGGTCTGCCAGAAACCAGGACTCAGTCCTCCAGCATCCTGGGATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS TCA 72 bp | TGTAGGCTATACAGGGAGCATGACACTGACATCTGCTaGGCTTCTGTGGAGGCCTCAGGAAACTTACTTACA | + |
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Preference number: 6 (lower is better) Translates to: CRLYREHDTDIC*ASVEASGNLLT Trigger: TGTAAGTAAGTTTCCTGAGGCCTCCACAGAAGCTCAGCAGATGTCAGTGTCATGCTCCCTGTATAGCCTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS TCA 72 bp | GGCATGGTCCAAGTTATCAAACTAGGAGCACTCCATTaGAGTTTCAGGACAAACGCTGTGCTGAATATAAGG | + |
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Preference number: 6 (lower is better) Translates to: GMVQVIKLGALH*SFRTNAVLNIR Trigger: CCTTATATTCAGCACAGCGTTTGTCCTGAAACTTCAATGGAGTGCTCCTAGTTTGATAACTTGGACCATGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS CAA 72 bp | CGTAAACAACCAGATCTTGCAAGAACTCACTCACTATaGCAAGGACAGGACCAAAGGGATGAGGCTAAATCA | + |
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Preference number: 6 (lower is better) Translates to: RKQPDLARTHSL*QGQDQRDEAKS Trigger: TGATTTAGCCTCATCCCTTTGGTCCTGTCCTTGCAATAGTGAGTGAGTTCTTGCAAGATCTGGTTGTTTACG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS CCA 72 bp | ACCTCTAACACTGGGGATTGCAACATGAGTTTTGGGTaGGGACTCATATTCAACTATATCAGCTGCTTTCAT | + |
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Preference number: 6 (lower is better) Translates to: TSNTGDCNMSFG*GLIFNYISCFH Trigger: ATGAAAGCAGCTGATATAGTTGAATATGAGTCCCCACCCAAAACTCATGTTGCAATCCCCAGTGTTAGAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS CAA 72 bp | TGGCATGGTCCAAGTTATCAAACTAGGAGCACTCCATaGAAGTTTCAGGACAAACGCTGTGCTGAATATAAG | + |
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Preference number: 6 (lower is better) Translates to: WHGPSYQTRSTP*KFQDKRCAEYK Trigger: CTTATATTCAGCACAGCGTTTGTCCTGAAACTTCAATGGAGTGCTCCTAGTTTGATAACTTGGACCATGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS CAA 90 bp | CAATTTATTTGGCATGGTCCAAGTTATCAAACTAGGAGCACTCCATaGAAGTTTCAGGACAAACGCTGTGCTGAATATAAGGATGACCCC | + |
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Preference number: 6 (lower is better) Translates to: QFIWHGPSYQTRSTP*KFQDKRCAEYKDDP Trigger: GGGGTCATCCTTATATTCAGCACAGCGTTTGTCCTGAAACTTCAATGGAGTGCTCCTAGTTTGATAACTTGGACCATGCCAAATAAATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS CCA 72 bp | GCACATCTAAGAATGCAATTAACTCATAAGATACTGTaGCGAGCAATATCCGCAGTTCCTAGGAATTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: AHLRMQLTHKIL*RAISAVPRNLS Trigger: GGACAAATTCCTAGGAACTGCGGATATTGCTCGCCACAGTATCTTATGAGTTAATTGCATTCTTAGATGTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS GCA 72 bp | CACAGTCATGTCCATTTGCTACATATTGTCTATGGCTaGTGGATTTGGCTGTTCTCTCATGCTATAAAGAAA | + |
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Preference number: 6 (lower is better) Translates to: HSHVHLLHIVYG*WIWLFSHAIKK Trigger: TTTCTTTATAGCATGAGAGAACAGCCAAATCCAGCAGCCATAGACAATATGTAGCAAATGGACATGACTGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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| CDS CCA 72 bp | GTCCATTTGCTACATATTGTCTATGGCTGCTGGATTTaGCTGTTCTCTCATGCTATAAAGAAATACCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: VHLLHIVYGCWI*LFSHAIKKYLR Trigger: TCTCAGGTATTTCTTTATAGCATGAGAGAACAGCCAAATCCAGCAGCCATAGACAATATGTAGCAAATGGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511677.1 |
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