Pregenerated sensors for LINC02749 (Homo sapiens)
Ensembl gene IDs: ENSG00000254480Ensembl transcript IDs: ENST00000525365.1, ENST00000667222.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGGCCTGCACAGGTGGCTGTTGTAGAAATGCAGCGTTTACAGTTCTaGAGGCTGGGAAGTCCACAGGCATGGTGCCGGCATCTGCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: GPAQVAVVEMQRLQF*RLGSPQAWCRHLLS Trigger: GCTGAGCAGATGCCGGCACCATGCCTGTGGACTTCCCAGCCTCCAGAACTGTAAACGCTGCATTTCTACAACAGCCACCTGTGCAGGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667222.1 |
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| CDS GCA 90 bp | TACAGTTCTGGAGGCTGGGAAGTCCACAGGCATGGTGCCGGCATCTaGTCAGCATCTGGTGAGGGCCTTCTTGCTGTGTCATCCTGTGTC | + |
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Preference number: 5 (lower is better) Translates to: YSSGGWEVHRHGAGI*SASGEGLLAVSSCV Trigger: GACACAGGATGACACAGCAAGAAGGCCCTCACCAGATGCTGAGCAGATGCCGGCACCATGCCTGTGGACTTCCCAGCCTCCAGAACTGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667222.1 |
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| CDS TCA 90 bp | CTGGGAAGTCCACAGGCATGGTGCCGGCATCTGCTCAGCATCTGGTaGGGGCCTTCTTGCTGTGTCATCCTGTGTCAGATCTCAAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: LGSPQAWCRHLLSIW*GPSCCVILCQISSF Trigger: GAAGCTTGAGATCTGACACAGGATGACACAGCAAGAAGGCCCTCACCAGATGCTGAGCAGATGCCGGCACCATGCCTGTGGACTTCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667222.1 |
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| CDS GCA 90 bp | CTCTGGTGCCCTTTTCAGAAGACCAAATCCCCAGGTTACAGAGCATaGAGGGCCTGCACAGGTGGCTGTTGTAGAAATGCAGCGTTTACC | + |
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Preference number: 5 (lower is better) Translates to: LWCPFQKTKSPGYRA*RACTGGCCRNAAFT Trigger: GGTAAACGCTGCATTTCTACAACAGCCACCTGTGCAGGCCCTGCATGCTCTGTAACCTGGGGATTTGGTCTTCTGAAAAGGGCACCAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000525365.1 |
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| CDS GCA 90 bp | CTCTGGTGCCCTTTTCAGAAGACCAAATCCCCAGGTTACAGAGCATaGAGGGCCTGCACAGGTGGCTGTTGTAGAAATGCAGCGTTTACA | + |
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Preference number: 5 (lower is better) Translates to: LWCPFQKTKSPGYRA*RACTGGCCRNAAFT Trigger: TGTAAACGCTGCATTTCTACAACAGCCACCTGTGCAGGCCCTGCATGCTCTGTAACCTGGGGATTTGGTCTTCTGAAAAGGGCACCAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000667222.1 |
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| CDS GCA 72 bp | GGAGGCTGGGAAGTCCACAGGCATGGTGCCGGCATCTaGTCAGCATCTGGTGAGGGCCTTCTTGCTGTGTCA | + |
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Preference number: 6 (lower is better) Translates to: GGWEVHRHGAGI*SASGEGLLAVS Trigger: TGACACAGCAAGAAGGCCCTCACCAGATGCTGAGCAGATGCCGGCACCATGCCTGTGGACTTCCCAGCCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667222.1 |
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| CDS TCA 72 bp | CCACAGGCATGGTGCCGGCATCTGCTCAGCATCTGGTaGGGGCCTTCTTGCTGTGTCATCCTGTGTCAGATC | + |
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Preference number: 6 (lower is better) Translates to: PQAWCRHLLSIW*GPSCCVILCQI Trigger: GATCTGACACAGGATGACACAGCAAGAAGGCCCTCACCAGATGCTGAGCAGATGCCGGCACCATGCCTGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667222.1 |
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| CDS CCA 72 bp | CAGGTGGCTGTTGTAGAAATGCAGCGTTTACAGTTCTaGAGGCTGGGAAGTCCACAGGCATGGTGCCGGCAT | + |
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Preference number: 6 (lower is better) Translates to: QVAVVEMQRLQF*RLGSPQAWCRH Trigger: ATGCCGGCACCATGCCTGTGGACTTCCCAGCCTCCAGAACTGTAAACGCTGCATTTCTACAACAGCCACCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667222.1 |
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| CDS CAA 72 bp | GTGCCGGCATCTGCTCAGCATCTGGTGAGGGCCTTCTaGCTGTGTCATCCTGTGTCAGATCTCAAGCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: VPASAQHLVRAF*LCHPVSDLKLL Trigger: AAGAAGCTTGAGATCTGACACAGGATGACACAGCAAGAAGGCCCTCACCAGATGCTGAGCAGATGCCGGCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667222.1 |
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| CDS GCA 72 bp | AAGACCAAATCCCCAGGTTACAGAGCATGCAGGGCCTaGACAGGTGGCTGTTGTAGAAATGCAGCGTTTACC | + |
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Preference number: 6 (lower is better) Translates to: KTKSPGYRACRA*TGGCCRNAAFT Trigger: GGTAAACGCTGCATTTCTACAACAGCCACCTGTGCAGGCCCTGCATGCTCTGTAACCTGGGGATTTGGTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000525365.1 |
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| CDS GCA 72 bp | AAGACCAAATCCCCAGGTTACAGAGCATGCAGGGCCTaGACAGGTGGCTGTTGTAGAAATGCAGCGTTTACA | + |
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Preference number: 6 (lower is better) Translates to: KTKSPGYRACRA*TGGCCRNAAFT Trigger: TGTAAACGCTGCATTTCTACAACAGCCACCTGTGCAGGCCCTGCATGCTCTGTAACCTGGGGATTTGGTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667222.1 |
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| CDS TCA 72 bp | TCCTGGTGGGATGGATGCCCAGTGGTCAGGAAGGAGTaGTGTGTGTCTCTGAAGTTGAGAAACATGAATCCA | + |
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Preference number: 6 (lower is better) Translates to: SWWDGCPVVRKE*CVSLKLRNMNP Trigger: TGGATTCATGTTTCTCAACTTCAGAGACACACATCACTCCTTCCTGACCACTGGGCATCCATCCCACCAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000525365.1 ENST00000667222.1 |
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