Pregenerated sensors for LINC02748 (Homo sapiens)
Ensembl gene IDs: ENSG00000255187Ensembl transcript IDs: ENST00000526509.2, ENST00000666286.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTTCCCATGGAGGCTGTTCACTTCCACCACTTTCCATCTCCCCGTTaGTGTGGAACTTTCTGGCACAGTAGAACCAGATATGTAAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: LPMEAVHFHHFPSPR*CGTFWHSRTRYVKE Trigger: TTCCTTTACATATCTGGTTCTACTGTGCCAGAAAGTTCCACACCAACGGGGAGATGGAAAGTGGTGGAAGTGAACAGCCTCCATGGGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666286.1 |
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| CDS GCA 90 bp | ATATGTAAAGGAAGGTTTGCAGCTGTAGAAAGGAAGGTGTTGGTATaGAGTGCCCAAGCAAGGAGGATCAGGCAGCAAATGCTTAAGTCC | + |
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Preference number: 5 (lower is better) Translates to: ICKGRFAAVERKVLV*SAQARRIRQQMLKS Trigger: GGACTTAAGCATTTGCTGCCTGATCCTCCTTGCTTGGGCACTGCATACCAACACCTTCCTTTCTACAGCTGCAAACCTTCCTTTACATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000526509.2 ENST00000666286.1 |
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| CDS GCA 90 bp | CATTTATTGACCCAGTTAATGATCATTTATAGAGCACCTATGATGTaGCAGGAGTCAGTGGCAAATGTGAGAATAGGTGGAAGCAAAAGA | + |
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Preference number: 5 (lower is better) Translates to: HLLTQLMIIYRAPMM*QESVANVRIGGSKR Trigger: TCTTTTGCTTCCACCTATTCTCACATTTGCCACTGACTCCTGGCACATCATAGGTGCTCTATAAATGATCATTAACTGGGTCAATAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666286.1 |
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| CDS TCA 90 bp | TGCAGTCCCATCCAAATTTCCTTTACACTGTATTCTTTCTTGCAGTaGCTCGTTAATATTTTGAGTTCCACTTTGCAGAGACTGTATTTG | + |
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Preference number: 5 (lower is better) Translates to: CSPIQISFTLYSFLQ*LVNILSSTLQRLYL Trigger: CAAATACAGTCTCTGCAAAGTGGAACTCAAAATATTAACGAGTCACTGCAAGAAAGAATACAGTGTAAAGGAAATTTGGATGGGACTGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000526509.2 ENST00000666286.1 |
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| CDS TCA 90 bp | GAACTTGGTACAAAATGGTATTCTTGGAGAGTACTAAGTCTTTCTTaGTGTAAGAGACACAGATTGTATTCCTCCAGGATCTACATTTGG | + |
|
Preference number: 5 (lower is better) Translates to: ELGTKWYSWRVLSLS*CKRHRLYSSRIYIW Trigger: CCAAATGTAGATCCTGGAGGAATACAATCTGTGTCTCTTACATCAAGAAAGACTTAGTACTCTCCAAGAATACCATTTTGTACCAAGTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000526509.2 ENST00000666286.1 |
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| CDS TCA 90 bp | ACACAGATTGTATTCCTCCAGGATCTACATTTGGATAGACTTCATTaGTTTTACTTGCAGTCCCATCCAAATTTCCTTTACACTGTATTC | + |
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Preference number: 5 (lower is better) Translates to: TQIVFLQDLHLDRLH*FYLQSHPNFLYTVF Trigger: GAATACAGTGTAAAGGAAATTTGGATGGGACTGCAAGTAAAATCAATGAAGTCTATCCAAATGTAGATCCTGGAGGAATACAATCTGTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000526509.2 ENST00000666286.1 |
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| CDS GCA 90 bp | TATTCCTCCAGGATCTACATTTGGATAGACTTCATTGATTTTACTTaGAGTCCCATCCAAATTTCCTTTACACTGTATTCTTTCTTGCAG | + |
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Preference number: 5 (lower is better) Translates to: YSSRIYIWIDFIDFT*SPIQISFTLYSFLQ Trigger: CTGCAAGAAAGAATACAGTGTAAAGGAAATTTGGATGGGACTGCAAGTAAAATCAATGAAGTCTATCCAAATGTAGATCCTGGAGGAATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000526509.2 ENST00000666286.1 |
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| CDS GCA 72 bp | GGAAGGTTTGCAGCTGTAGAAAGGAAGGTGTTGGTATaGAGTGCCCAAGCAAGGAGGATCAGGCAGCAAATG | + |
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Preference number: 6 (lower is better) Translates to: GRFAAVERKVLV*SAQARRIRQQM Trigger: CATTTGCTGCCTGATCCTCCTTGCTTGGGCACTGCATACCAACACCTTCCTTTCTACAGCTGCAAACCTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000526509.2 ENST00000666286.1 |
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| CDS CCA 72 bp | GAGGCTGTTCACTTCCACCACTTTCCATCTCCCCGTTaGTGTGGAACTTTCTGGCACAGTAGAACCAGATAT | + |
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Preference number: 6 (lower is better) Translates to: EAVHFHHFPSPR*CGTFWHSRTRY Trigger: ATATCTGGTTCTACTGTGCCAGAAAGTTCCACACCAACGGGGAGATGGAAAGTGGTGGAAGTGAACAGCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666286.1 |
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| CDS CAA 72 bp | TGTAAAGGAAGGTTTGCAGCTGTAGAAAGGAAGGTGTaGGTATGCAGTGCCCAAGCAAGGAGGATCAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: CKGRFAAVERKV*VCSAQARRIRQ Trigger: CTGCCTGATCCTCCTTGCTTGGGCACTGCATACCAACACCTTCCTTTCTACAGCTGCAAACCTTCCTTTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000526509.2 ENST00000666286.1 |
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| CDS CAA 90 bp | AACCAGATATGTAAAGGAAGGTTTGCAGCTGTAGAAAGGAAGGTGTaGGTATGCAGTGCCCAAGCAAGGAGGATCAGGCAGCAAATGCTT | + |
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Preference number: 6 (lower is better) Translates to: NQICKGRFAAVERKV*VCSAQARRIRQQML Trigger: AAGCATTTGCTGCCTGATCCTCCTTGCTTGGGCACTGCATACCAACACCTTCCTTTCTACAGCTGCAAACCTTCCTTTACATATCTGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000526509.2 ENST00000666286.1 |
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| CDS GCA 72 bp | ACCCAGTTAATGATCATTTATAGAGCACCTATGATGTaGCAGGAGTCAGTGGCAAATGTGAGAATAGGTGGA | + |
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Preference number: 6 (lower is better) Translates to: TQLMIIYRAPMM*QESVANVRIGG Trigger: TCCACCTATTCTCACATTTGCCACTGACTCCTGGCACATCATAGGTGCTCTATAAATGATCATTAACTGGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666286.1 |
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| CDS CAA 72 bp | GTTAATATTTTGAGTTCCACTTTGCAGAGACTGTATTaGCCTGAGTTGGAGACCTTTGTTTTGGGAAGCAAG | + |
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Preference number: 6 (lower is better) Translates to: VNILSSTLQRLY*PELETFVLGSK Trigger: CTTGCTTCCCAAAACAAAGGTCTCCAACTCAGGCAAATACAGTCTCTGCAAAGTGGAACTCAAAATATTAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000526509.2 ENST00000666286.1 |
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| CDS TCA 72 bp | CCTAAGTCACATGTAAAGACTTGTGATCCTCCAGTTTaGACTTGGTACAAAATGGTATTCTTGGAGAGTACT | + |
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Preference number: 6 (lower is better) Translates to: PKSHVKTCDPPV*TWYKMVFLEST Trigger: AGTACTCTCCAAGAATACCATTTTGTACCAAGTTCAAACTGGAGGATCACAAGTCTTTACATGTGACTTAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000526509.2 ENST00000666286.1 |
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