Pregenerated sensors for LINC02728 (Homo sapiens)
Ensembl gene IDs: ENSG00000251323Ensembl transcript IDs: ENST00000513207.2, ENST00000660634.1, ENST00000664831.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTTAGTGACACCCAGATGTATCTTCCGGAGGAGCTCTCAAGCAGTTaGTTCAACAGGGCAAACAGCTGTGGTCTGCAAGCATCTCCAAGG | + |
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Preference number: 5 (lower is better) Translates to: LSDTQMYLPEELSSS*FNRANSCGLQASPR Trigger: CCTTGGAGATGCTTGCAGACCACAGCTGTTTGCCCTGTTGAAGCAACTGCTTGAGAGCTCCTCCGGAAGATACATCTGGGTGTCACTAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660634.1 |
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| CDS TCA 90 bp | GGAGACGAATGGCAGCATAAGACAACCGGTATTTGCATAAGGCGCTaGAGGAGCATAACGAAAGGAGAAAGTCTGGAAGCCATTGTCCAA | + |
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Preference number: 5 (lower is better) Translates to: GDEWQHKTTGICIRR*RSITKGESLEAIVQ Trigger: TTGGACAATGGCTTCCAGACTTTCTCCTTTCGTTATGCTCCTTCAGCGCCTTATGCAAATACCGGTTGTCTTATGCTGCCATTCGTCTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660634.1 |
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| CDS GCA 90 bp | CTTAGTGACACCCAGATGTATCTTCCGGAGGAGCTCTCAAGCAGTTaGTTCAACAGGGCAAACAGCTGTGGTCTGTTTCAACATAATTTG | + |
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Preference number: 5 (lower is better) Translates to: LSDTQMYLPEELSSS*FNRANSCGLFQHNL Trigger: CAAATTATGTTGAAACAGACCACAGCTGTTTGCCCTGTTGAAGCAACTGCTTGAGAGCTCCTCCGGAAGATACATCTGGGTGTCACTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000513207.2 ENST00000664831.1 |
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| CDS CCA 90 bp | ACACCATATCCATTAGCAACTCTCCATTCCCCCAATCCCATCAGCTaGCAACCGCTAACCTACTTTTCATCTCTATGGATTTGCCAATTC | + |
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Preference number: 5 (lower is better) Translates to: TPYPLATLHSPNPIS*QPLTYFSSLWICQF Trigger: GAATTGGCAAATCCATAGAGATGAAAAGTAGGTTAGCGGTTGCCAGCTGATGGGATTGGGGGAATGGAGAGTTGCTAATGGATATGGTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000513207.2 |
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| CDS TCA 90 bp | CATCTTGCAAAATTCTTCACAATTGAACAGTCTACTCTCCTGGGTTaGTACCACTGCACACAGCCACCAAAGAAAATCTCACCACCATCT | + |
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Preference number: 5 (lower is better) Translates to: HLAKFFTIEQSTLLG*YHCTQPPKKISPPS Trigger: AGATGGTGGTGAGATTTTCTTTGGTGGCTGTGTGCAGTGGTATCAACCCAGGAGAGTAGACTGTTCAATTGTGAAGAATTTTGCAAGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000513207.2 ENST00000660634.1 ENST00000664831.1 |
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| CDS CCA 90 bp | ACAACCATCTTGCAAAATTCTTCACAATTGAACAGTCTACTCTCCTaGGTTGATACCACTGCACACAGCCACCAAAGAAAATCTCACCAC | + |
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Preference number: 5 (lower is better) Translates to: TTILQNSSQLNSLLS*VDTTAHSHQRKSHH Trigger: GTGGTGAGATTTTCTTTGGTGGCTGTGTGCAGTGGTATCAACCCAGGAGAGTAGACTGTTCAATTGTGAAGAATTTTGCAAGATGGTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000513207.2 ENST00000660634.1 ENST00000664831.1 |
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| CDS GCA 90 bp | TTCAGTAACAGACAGATAACTAAACTCATTACTACTTTTGATTCCTaGCTTTTGGTCCTGTGTTCAGGAAACAGCTCCAGGCAGATTTGT | + |
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Preference number: 5 (lower is better) Translates to: FSNRQITKLITTFDS*LLVLCSGNSSRQIC Trigger: ACAAATCTGCCTGGAGCTGTTTCCTGAACACAGGACCAAAAGGCAGGAATCAAAAGTAGTAATGAGTTTAGTTATCTGTCTGTTACTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000513207.2 ENST00000660634.1 ENST00000664831.1 |
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| CDS CCA 90 bp | GAAAATCTCACCACCATCTCACTAGTCAGTTCCACTTCTTTTTGCTaGCAAGAGCAATACTCAACAGATTTGAATTTCCTTCCTCTTACA | + |
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Preference number: 5 (lower is better) Translates to: ENLTTISLVSSTSFC*QEQYSTDLNFLPLT Trigger: TGTAAGAGGAAGGAAATTCAAATCTGTTGAGTATTGCTCTTGCCAGCAAAAAGAAGTGGAACTGACTAGTGAGATGGTGGTGAGATTTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000513207.2 ENST00000660634.1 ENST00000664831.1 |
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| CDS GCA 90 bp | AAAGAAAATCTCACCACCATCTCACTAGTCAGTTCCACTTCTTTTTaGTGGCAAGAGCAATACTCAACAGATTTGAATTTCCTTCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: KENLTTISLVSSTSF*WQEQYSTDLNFLPL Trigger: AAGAGGAAGGAAATTCAAATCTGTTGAGTATTGCTCTTGCCAGCAAAAAGAAGTGGAACTGACTAGTGAGATGGTGGTGAGATTTTCTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000513207.2 ENST00000660634.1 ENST00000664831.1 |
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| CDS TCA 90 bp | TCAGTTCCACTTCTTTTTGCTGGCAAGAGCAATACTCAACAGATTTaGATTTCCTTCCTCTTACATCCTTCCTATAGAAAACTGAAACAA | + |
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Preference number: 5 (lower is better) Translates to: SVPLLFAGKSNTQQI*ISFLLHPSYRKLKQ Trigger: TTGTTTCAGTTTTCTATAGGAAGGATGTAAGAGGAAGGAAATTCAAATCTGTTGAGTATTGCTCTTGCCAGCAAAAAGAAGTGGAACTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000513207.2 ENST00000660634.1 ENST00000664831.1 |
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| CDS CCA 72 bp | CTGTCGCGGACCTCACATTCTGGCAGAGGAGACGAATaGCAGCATAAGACAACCGGTATTTGCATAAGGCGC | + |
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Preference number: 6 (lower is better) Translates to: LSRTSHSGRGDE*QHKTTGICIRR Trigger: GCGCCTTATGCAAATACCGGTTGTCTTATGCTGCCATTCGTCTCCTCTGCCAGAATGTGAGGTCCGCGACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660634.1 |
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| CDS GCA 72 bp | ACCCAGATGTATCTTCCGGAGGAGCTCTCAAGCAGTTaGTTCAACAGGGCAAACAGCTGTGGTCTGTTTCAA | + |
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Preference number: 6 (lower is better) Translates to: TQMYLPEELSSS*FNRANSCGLFQ Trigger: TTGAAACAGACCACAGCTGTTTGCCCTGTTGAAGCAACTGCTTGAGAGCTCCTCCGGAAGATACATCTGGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000513207.2 ENST00000664831.1 |
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| CDS TCA 72 bp | TGGCAGCATAAGACAACCGGTATTTGCATAAGGCGCTaGAGGAGCATAACGAAAGGAGAAAGTCTGGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: WQHKTTGICIRR*RSITKGESLEA Trigger: GGCTTCCAGACTTTCTCCTTTCGTTATGCTCCTTCAGCGCCTTATGCAAATACCGGTTGTCTTATGCTGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660634.1 |
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| CDS GCA 72 bp | AGACACTCTCCAAGGCACTGCAGATATAAAAATGAATaGATTCTTATCCCTGCTGTCGCGGACCTCACATTC | + |
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Preference number: 6 (lower is better) Translates to: RHSPRHCRYKNE*ILIPAVADLTF Trigger: GAATGTGAGGTCCGCGACAGCAGGGATAAGAATGCATTCATTTTTATATCTGCAGTGCCTTGGAGAGTGTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000660634.1 ENST00000664831.1 |
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| CDS TCA 72 bp | TTGGTCACCTTAATGATTCAATTGGTGGTTTCTAAATaGGTGCCCACTATGTGTCAGACACTCTCCAAGGCA | + |
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Preference number: 6 (lower is better) Translates to: LVTLMIQLVVSK*VPTMCQTLSKA Trigger: TGCCTTGGAGAGTGTCTGACACATAGTGGGCACTCATTTAGAAACCACCAATTGAATCATTAAGGTGACCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000660634.1 ENST00000664831.1 |
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| CDS GCA 72 bp | AGACAGATAACTAAACTCATTACTACTTTTGATTCCTaGCTTTTGGTCCTGTGTTCAGGAAACAGCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: RQITKLITTFDS*LLVLCSGNSSR Trigger: CCTGGAGCTGTTTCCTGAACACAGGACCAAAAGGCAGGAATCAAAAGTAGTAATGAGTTTAGTTATCTGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000513207.2 ENST00000660634.1 ENST00000664831.1 |
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| CDS CCA 72 bp | TTGCAAAATTCTTCACAATTGAACAGTCTACTCTCCTaGGTTGATACCACTGCACACAGCCACCAAAGAAAA | + |
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Preference number: 6 (lower is better) Translates to: LQNSSQLNSLLS*VDTTAHSHQRK Trigger: TTTTCTTTGGTGGCTGTGTGCAGTGGTATCAACCCAGGAGAGTAGACTGTTCAATTGTGAAGAATTTTGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000513207.2 ENST00000660634.1 ENST00000664831.1 |
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| CDS CAA 72 bp | CTGTTGTCTGATGGACGTATTTCCCCCACCCTGTTTTaGGTCACCTTAATGATTCAATTGGTGGTTTCTAAA | + |
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Preference number: 6 (lower is better) Translates to: LLSDGRISPTLF*VTLMIQLVVSK Trigger: TTTAGAAACCACCAATTGAATCATTAAGGTGACCAAAAACAGGGTGGGGGAAATACGTCCATCAGACAACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000660634.1 ENST00000664831.1 |
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| CDS CAA 90 bp | AACAGACAGATAACTAAACTCATTACTACTTTTGATTCCTGCCTTTaGGTCCTGTGTTCAGGAAACAGCTCCAGGCAGATTTGTGTGTTC | + |
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Preference number: 6 (lower is better) Translates to: NRQITKLITTFDSCL*VLCSGNSSRQICVF Trigger: GAACACACAAATCTGCCTGGAGCTGTTTCCTGAACACAGGACCAAAAGGCAGGAATCAAAAGTAGTAATGAGTTTAGTTATCTGTCTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513207.2 |
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| CDS CAA 90 bp | AACAGACAGATAACTAAACTCATTACTACTTTTGATTCCTGCCTTTaGGTCCTGTGTTCAGGAAACAGCTCCAGGCAGATTTGTGCTGAA | + |
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Preference number: 6 (lower is better) Translates to: NRQITKLITTFDSCL*VLCSGNSSRQICAE Trigger: TTCAGCACAAATCTGCCTGGAGCTGTTTCCTGAACACAGGACCAAAAGGCAGGAATCAAAAGTAGTAATGAGTTTAGTTATCTGTCTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000660634.1 ENST00000664831.1 |
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| CDS CAA 90 bp | CAAAGAAAATCTCACCACCATCTCACTAGTCAGTTCCACTTCTTTTaGCTGGCAAGAGCAATACTCAACAGATTTGAATTTCCTTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: QRKSHHHLTSQFHFF*LARAILNRFEFPSS Trigger: AGAGGAAGGAAATTCAAATCTGTTGAGTATTGCTCTTGCCAGCAAAAAGAAGTGGAACTGACTAGTGAGATGGTGGTGAGATTTTCTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000513207.2 ENST00000660634.1 ENST00000664831.1 |
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| CDS CCA 72 bp | ACCACCATCTCACTAGTCAGTTCCACTTCTTTTTGCTaGCAAGAGCAATACTCAACAGATTTGAATTTCCTT | + |
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Preference number: 6 (lower is better) Translates to: TTISLVSSTSFC*QEQYSTDLNFL Trigger: AAGGAAATTCAAATCTGTTGAGTATTGCTCTTGCCAGCAAAAAGAAGTGGAACTGACTAGTGAGATGGTGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000513207.2 ENST00000660634.1 ENST00000664831.1 |
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| CDS CAA 72 bp | ATAACTAAACTCATTACTACTTTTGATTCCTGCCTTTaGGTCCTGTGTTCAGGAAACAGCTCCAGGCAGATT | + |
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Preference number: 6 (lower is better) Translates to: ITKLITTFDSCL*VLCSGNSSRQI Trigger: AATCTGCCTGGAGCTGTTTCCTGAACACAGGACCAAAAGGCAGGAATCAAAAGTAGTAATGAGTTTAGTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000513207.2 ENST00000660634.1 ENST00000664831.1 |
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| CDS CAA 72 bp | TCTCACCACCATCTCACTAGTCAGTTCCACTTCTTTTaGCTGGCAAGAGCAATACTCAACAGATTTGAATTT | + |
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Preference number: 6 (lower is better) Translates to: SHHHLTSQFHFF*LARAILNRFEF Trigger: AAATTCAAATCTGTTGAGTATTGCTCTTGCCAGCAAAAAGAAGTGGAACTGACTAGTGAGATGGTGGTGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000513207.2 ENST00000660634.1 ENST00000664831.1 |
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| CDS CCA 72 bp | AATGCTGTTGCGATCATTCCTGTACAAGTTTTTGTGTaGACATACGTTTTCAATCTACGTATTTATCTAGGA | + |
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Preference number: 6 (lower is better) Translates to: NAVAIIPVQVFV*TYVFNLRIYLG Trigger: TCCTAGATAAATACGTAGATTGAAAACGTATGTCCACACAAAAACTTGTACAGGAATGATCGCAACAGCATT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000513207.2 ENST00000660634.1 |
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| CDS CAA 72 bp | TCATCAGCTGATGAACATTACAGTTGTTTCCACTTTTaGGCTATTATGAATAATGCTGTTGCGATCATTCCT | + |
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Preference number: 6 (lower is better) Translates to: SSADEHYSCFHF*AIMNNAVAIIP Trigger: AGGAATGATCGCAACAGCATTATTCATAATAGCCAAAAAGTGGAAACAACTGTAATGTTCATCAGCTGATGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513207.2 |
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