Pregenerated sensors for LINC02722 (Homo sapiens)

Ensembl gene IDs: ENSG00000255169

Ensembl transcript IDs: ENST00000534666.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GGCGATCAACTCACAAGAGCTCCTCATATGATGACAGCTGGTGGCTaGAATCAGCTCACTTTTGAAGCTCTGATTCCTCCCATTATCATT	+
Preference number: 5 (lower is better) Translates to: GDQLTRAPHMMTAGG*NQLTFEALIPPIII Trigger: AATGATAATGGGAGGAATCAGAGCTTCAAAAGTGAGCTGATTCCAGCCACCAGCTGTCATCATATGAGGAGCTCTTGTGAGTTGATCGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534666.1
CDS TCA 90 bp	TCAGAAATGCTGGATTATCAAGCTGTTCAAAGTTTGTGGTTCTTCTaGGTAAAGCAGAGTACTCATGGCTGGGTCTGGAAAAGCTTTTCT	+
Preference number: 5 (lower is better) Translates to: SEMLDYQAVQSLWFF*VKQSTHGWVWKSFS Trigger: AGAAAAGCTTTTCCAGACCCAGCCATGAGTACTCTGCTTTACTCAGAAGAACCACAAACTTTGAACAGCTTGATAATCCAGCATTTCTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000534666.1
CDS CCA 90 bp	GTAATCATGTTCGACAGGCCTGTATACTGCTTACAAAATTCGCATTaGTCTTATTTCTCTGATGAATGCCACATACTCACTTCTCTTTAC	+
Preference number: 5 (lower is better) Translates to: VIMFDRPVYCLQNSH*SYFSDECHILTSLY Trigger: GTAAAGAGAAGTGAGTATGTGGCATTCATCAGAGAAATAAGACCAATGCGAATTTTGTAAGCAGTATACAGGCCTGTCGAACATGATTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534666.1
CDS CCA 72 bp	CAAAGGTATGTCTGGTTGGTCAGTATCACTGAGCTGTaGCCATGTTTAGAGGCTCATTCCTCTTTCATGGGC	+
Preference number: 6 (lower is better) Translates to: QRYVWLVSITEL*PCLEAHSSFMG Trigger: GCCCATGAAAGAGGAATGAGCCTCTAAACATGGCCACAGCTCAGTGATACTGACCAACCAGACATACCTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534666.1
CDS TCA 72 bp	CTGGATTATCAAGCTGTTCAAAGTTTGTGGTTCTTCTaGGTAAAGCAGAGTACTCATGGCTGGGTCTGGAAA	+
Preference number: 6 (lower is better) Translates to: LDYQAVQSLWFF*VKQSTHGWVWK Trigger: TTTCCAGACCCAGCCATGAGTACTCTGCTTTACTCAGAAGAACCACAAACTTTGAACAGCTTGATAATCCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000534666.1
CDS CCA 72 bp	TTCGACAGGCCTGTATACTGCTTACAAAATTCGCATTaGTCTTATTTCTCTGATGAATGCCACATACTCACT	+
Preference number: 6 (lower is better) Translates to: FDRPVYCLQNSH*SYFSDECHILT Trigger: AGTGAGTATGTGGCATTCATCAGAGAAATAAGACCAATGCGAATTTTGTAAGCAGTATACAGGCCTGTCGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534666.1
CDS GCA 72 bp	ATTTTCCAAGTAATCATGTTCGACAGGCCTGTATACTaGTTACAAAATTCGCATTGGTCTTATTTCTCTGAT	+
Preference number: 6 (lower is better) Translates to: IFQVIMFDRPVY*LQNSHWSYFSD Trigger: ATCAGAGAAATAAGACCAATGCGAATTTTGTAAGCAGTATACAGGCCTGTCGAACATGATTACTTGGAAAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000534666.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu