Pregenerated sensors for LINC02720 (Homo sapiens)
Ensembl gene IDs: ENSG00000255178Ensembl transcript IDs: ENST00000526840.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGGGGAGTGCTGCAGTCAGGAGGGACAGAAGAATGTGAAAATAGATaGATATTCCAGGCTTCCAGGGTTCATGCAACCCAATCATCAAAC | + |
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Preference number: 5 (lower is better) Translates to: WGVLQSGGTEECENR*IFQASRVHATQSSN Trigger: GTTTGATGATTGGGTTGCATGAACCCTGGAAGCCTGGAATATTCATCTATTTTCACATTCTTCTGTCCCTCCTGACTGCAGCACTCCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS GCA 90 bp | CAATCATCAAACTCATATTCCCAGAGCAAGGCTACTTATCCCTGTTaGGCTTGGCAGAGGAACAAAGAATTCATGAGCTATCTTTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: QSSNSYSQSKATYPC*AWQRNKEFMSYLCH Trigger: GTGGCAAAGATAGCTCATGAATTCTTTGTTCCTCTGCCAAGCGCAACAGGGATAAGTAGCCTTGCTCTGGGAATATGAGTTTGATGATTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS TCA 90 bp | GCTTTGTCATCAAATAAACCTGCAGTTAAATCCTGGCTCTGGCATTaGCTGCCAGGAGGTTTGGGAGATGTAATACTTTTAAAACATACC | + |
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Preference number: 5 (lower is better) Translates to: ALSSNKPAVKSWLWH*LPGGLGDVILLKHT Trigger: GGTATGTTTTAAAAGTATTACATCTCCCAAACCTCCTGGCAGTCAATGCCAGAGCCAGGATTTAACTGCAGGTTTATTTGATGACAAAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS TCA 90 bp | ATTTCTGAGAGTAGGGACATGGGAAGAACCTTTTCACTCAATGGATaGGTTACTGCAACTGATGCTTCAGTTTTTCTACTTGCTGCTAAA | + |
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Preference number: 5 (lower is better) Translates to: ISESRDMGRTFSLNG*VTATDASVFLLAAK Trigger: TTTAGCAGCAAGTAGAAAAACTGAAGCATCAGTTGCAGTAACTCATCCATTGAGTGAAAAGGTTCTTCCCATGTCCCTACTCTCAGAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CCA 90 bp | CTTGTTTCTTCGAAATTTCAGAATGCATTTCTGAGAGTAGGGACATaGGAAGAACCTTTTCACTCAATGGATGAGTTACTGCAACTGATG | + |
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Preference number: 5 (lower is better) Translates to: LVSSKFQNAFLRVGT*EEPFHSMDELLQLM Trigger: CATCAGTTGCAGTAACTCATCCATTGAGTGAAAAGGTTCTTCCCATGTCCCTACTCTCAGAAATGCATTCTGAAATTTCGAAGAAACAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS GCA 90 bp | AAGCCATGTACTTGTGTAATGTCTTGTTTCTTCGAAATTTCAGAATaGATTTCTGAGAGTAGGGACATGGGAAGAACCTTTTCACTCAAT | + |
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Preference number: 5 (lower is better) Translates to: KPCTCVMSCFFEISE*ISESRDMGRTFSLN Trigger: ATTGAGTGAAAAGGTTCTTCCCATGTCCCTACTCTCAGAAATGCATTCTGAAATTTCGAAGAAACAAGACATTACACAAGTACATGGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CCA 90 bp | AAACCTGCTATATTTCTCTTCAGGTCTGTTTTAGTCTTTGTAAAATaGGCTTTGTCATCAAATAAACCTGCAGTTAAATCCTGGCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: KPAIFLFRSVLVFVK*ALSSNKPAVKSWLW Trigger: CCAGAGCCAGGATTTAACTGCAGGTTTATTTGATGACAAAGCCCATTTTACAAAGACTAAAACAGACCTGAAGAGAAATATAGCAGGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS TCA 72 bp | ACAGCTGGTCCTGGTCTGCACTCCTGGCCATGTGGGTaGGCCACATTGAAAGCGAATCCTGCAGGTCCCAGT | + |
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Preference number: 6 (lower is better) Translates to: TAGPGLHSWPCG*ATLKANPAGPS Trigger: ACTGGGACCTGCAGGATTCGCTTTCAATGTGGCTCACCCACATGGCCAGGAGTGCAGACCAGGACCAGCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CCA 72 bp | GAAGTCCTTGAAGAAACCCATGTGGAGAGAAACAGCTaGTCCTGGTCTGCACTCCTGGCCATGTGGGTGAGC | + |
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Preference number: 6 (lower is better) Translates to: EVLEETHVERNS*SWSALLAMWVS Trigger: GCTCACCCACATGGCCAGGAGTGCAGACCAGGACCAGCTGTTTCTCTCCACATGGGTTTCTTCAAGGACTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CCA 72 bp | CTTGAAGAAACCCATGTGGAGAGAAACAGCTGGTCCTaGTCTGCACTCCTGGCCATGTGGGTGAGCCACATT | + |
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Preference number: 6 (lower is better) Translates to: LEETHVERNSWS*SALLAMWVSHI Trigger: AATGTGGCTCACCCACATGGCCAGGAGTGCAGACCAGGACCAGCTGTTTCTCTCCACATGGGTTTCTTCAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CCA 72 bp | CTGAAGAAGCCCAAGAAGTCCTTGAAGAAACCCATGTaGAGAGAAACAGCTGGTCCTGGTCTGCACTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: LKKPKKSLKKPM*RETAGPGLHSW Trigger: CCAGGAGTGCAGACCAGGACCAGCTGTTTCTCTCCACATGGGTTTCTTCAAGGACTTCTTGGGCTTCTTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CAA 90 bp | CTCACGAAATCCAGCTGGCATGCTCTGAAGAAGCCCAAGAAGTCCTaGAAGAAACCCATGTGGAGAGAAACAGCTGGTCCTGGTCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: LTKSSWHALKKPKKS*KKPMWRETAGPGLH Trigger: GTGCAGACCAGGACCAGCTGTTTCTCTCCACATGGGTTTCTTCAAGGACTTCTTGGGCTTCTTCAGAGCATGCCAGCTGGATTTCGTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CCA 72 bp | TATTCCCAGAGCAAGGCTACTTATCCCTGTTGCGCTTaGCAGAGGAACAAAGAATTCATGAGCTATCTTTGC | + |
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Preference number: 6 (lower is better) Translates to: YSQSKATYPCCA*QRNKEFMSYLC Trigger: GCAAAGATAGCTCATGAATTCTTTGTTCCTCTGCCAAGCGCAACAGGGATAAGTAGCCTTGCTCTGGGAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CAA 90 bp | CCAATCATCAAACTCATATTCCCAGAGCAAGGCTACTTATCCCTGTaGCGCTTGGCAGAGGAACAAAGAATTCATGAGCTATCTTTGCCA | + |
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Preference number: 6 (lower is better) Translates to: PIIKLIFPEQGYLSL*RLAEEQRIHELSLP Trigger: TGGCAAAGATAGCTCATGAATTCTTTGTTCCTCTGCCAAGCGCAACAGGGATAAGTAGCCTTGCTCTGGGAATATGAGTTTGATGATTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS GCA 72 bp | AACTCATATTCCCAGAGCAAGGCTACTTATCCCTGTTaGGCTTGGCAGAGGAACAAAGAATTCATGAGCTAT | + |
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Preference number: 6 (lower is better) Translates to: NSYSQSKATYPC*AWQRNKEFMSY Trigger: ATAGCTCATGAATTCTTTGTTCCTCTGCCAAGCGCAACAGGGATAAGTAGCCTTGCTCTGGGAATATGAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CCA 72 bp | TTTTGTCTCTTAAGATGCTTACTCACGAAATCCAGCTaGCATGCTCTGAAGAAGCCCAAGAAGTCCTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: FCLLRCLLTKSS*HALKKPKKSLK Trigger: CTTCAAGGACTTCTTGGGCTTCTTCAGAGCATGCCAGCTGGATTTCGTGAGTAAGCATCTTAAGAGACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CAA 72 bp | ATATTCCCAGAGCAAGGCTACTTATCCCTGTTGCGCTaGGCAGAGGAACAAAGAATTCATGAGCTATCTTTG | + |
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Preference number: 6 (lower is better) Translates to: IFPEQGYLSLLR*AEEQRIHELSL Trigger: CAAAGATAGCTCATGAATTCTTTGTTCCTCTGCCAAGCGCAACAGGGATAAGTAGCCTTGCTCTGGGAATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CAA 72 bp | AAACTCATATTCCCAGAGCAAGGCTACTTATCCCTGTaGCGCTTGGCAGAGGAACAAAGAATTCATGAGCTA | + |
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Preference number: 6 (lower is better) Translates to: KLIFPEQGYLSL*RLAEEQRIHEL Trigger: TAGCTCATGAATTCTTTGTTCCTCTGCCAAGCGCAACAGGGATAAGTAGCCTTGCTCTGGGAATATGAGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CAA 90 bp | AATGCCTCCCCAGATGTCTTGAGCCAGGTATTATGTCGAGAGCTTTaGCATATCCATTTAATCCTCACAGAAGTTCTCTGGGGTATTATG | + |
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Preference number: 6 (lower is better) Translates to: NASPDVLSQVLCREL*HIHLILTEVLWGIM Trigger: CATAATACCCCAGAGAACTTCTGTGAGGATTAAATGGATATGCAAAAGCTCTCGACATAATACCTGGCTCAAGACATCTGGGGAGGCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CAA 72 bp | CCAGATGTCTTGAGCCAGGTATTATGTCGAGAGCTTTaGCATATCCATTTAATCCTCACAGAAGTTCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: PDVLSQVLCREL*HIHLILTEVLW Trigger: CCAGAGAACTTCTGTGAGGATTAAATGGATATGCAAAAGCTCTCGACATAATACCTGGCTCAAGACATCTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS TCA 72 bp | AGTAGGGACATGGGAAGAACCTTTTCACTCAATGGATaGGTTACTGCAACTGATGCTTCAGTTTTTCTACTT | + |
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Preference number: 6 (lower is better) Translates to: SRDMGRTFSLNG*VTATDASVFLL Trigger: AAGTAGAAAAACTGAAGCATCAGTTGCAGTAACTCATCCATTGAGTGAAAAGGTTCTTCCCATGTCCCTACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CAA 72 bp | TCTTTTGCCCTTCCCCTTGGTAGTGAAGCCATGTACTaGTGTAATGTCTTGTTTCTTCGAAATTTCAGAATG | + |
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Preference number: 6 (lower is better) Translates to: SFALPLGSEAMY*CNVLFLRNFRM Trigger: CATTCTGAAATTTCGAAGAAACAAGACATTACACAAGTACATGGCTTCACTACCAAGGGGAAGGGCAAAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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| CDS CAA 90 bp | CACTCAATGGATGAGTTACTGCAACTGATGCTTCAGTTTTTCTACTaGCTGCTAAAGCTTCACTTTTTCAATCCATCCAGCAAGTATCAT | + |
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Preference number: 6 (lower is better) Translates to: HSMDELLQLMLQFFY*LLKLHFFNPSSKYH Trigger: ATGATACTTGCTGGATGGATTGAAAAAGTGAAGCTTTAGCAGCAAGTAGAAAAACTGAAGCATCAGTTGCAGTAACTCATCCATTGAGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000526840.1 |
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