Pregenerated sensors for LINC02701 (Homo sapiens)
Ensembl gene IDs: ENSG00000250508Ensembl transcript IDs: ENST00000512200.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTTGTCCTCAGCAGCAACTCGGTCTCATCTAAGGATCAGCCAGGTTaGATGATCTGGGTCCTGCTGGCTGGTTCACTTGTCCTGAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: VVLSSNSVSSKDQPG*MIWVLLAGSLVLSC Trigger: GCAGCTCAGGACAAGTGAACCAGCCAGCAGGACCCAGATCATCCAACCTGGCTGATCCTTAGATGAGACCGAGTTGCTGCTGAGGACAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS TCA 90 bp | TTTATTTTAGGTACGCACCGGCTCAGAGGATTCACATCCGAAAGCTaGGCCCTGAACAAAGAGCAGGGTTTTTATAAGCGGTCTTACAGA | + |
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Preference number: 5 (lower is better) Translates to: FILGTHRLRGFTSES*ALNKEQGFYKRSYR Trigger: TCTGTAAGACCGCTTATAAAAACCCTGCTCTTTGTTCAGGGCTCAGCTTTCGGATGTGAATCCTCTGAGCCGGTGCGTACCTAAAATAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS CCA 90 bp | AGCATATATAAGGCTGGCCATTTCCTGGGTCACAGGTTGAATAGGTaGTTTGATTATAAGTACAAGTTCCTAAGCGAGTCCCTGTACACT | + |
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Preference number: 5 (lower is better) Translates to: SIYKAGHFLGHRLNR*FDYKYKFLSESLYT Trigger: AGTGTACAGGGACTCGCTTAGGAACTTGTACTTATAATCAAACCACCTATTCAACCTGTGACCCAGGAAATGGCCAGCCTTATATATGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS GCA 90 bp | AGAAACAGGAGAACAGATTTGGATGAGGTGCTTTGTAGTCATCTCTaGCCTGCCACAAAGTTTTCCTTAATGTTTCATTATAATATTGCT | + |
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Preference number: 5 (lower is better) Translates to: RNRRTDLDEVLCSHL*PATKFSLMFHYNIA Trigger: AGCAATATTATAATGAAACATTAAGGAAAACTTTGTGGCAGGGCAGAGATGACTACAAAGCACCTCATCCAAATCTGTTCTCCTGTTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS CCA 72 bp | TCGGTCTCATCTAAGGATCAGCCAGGTTGGATGATCTaGGTCCTGCTGGCTGGTTCACTTGTCCTGAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SVSSKDQPGWMI*VLLAGSLVLSC Trigger: GCAGCTCAGGACAAGTGAACCAGCCAGCAGGACCCAGATCATCCAACCTGGCTGATCCTTAGATGAGACCGA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS CCA 72 bp | AGCAGCAACTCGGTCTCATCTAAGGATCAGCCAGGTTaGATGATCTGGGTCCTGCTGGCTGGTTCACTTGTC | + |
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Preference number: 6 (lower is better) Translates to: SSNSVSSKDQPG*MIWVLLAGSLV Trigger: GACAAGTGAACCAGCCAGCAGGACCCAGATCATCCAACCTGGCTGATCCTTAGATGAGACCGAGTTGCTGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS TCA 72 bp | GGTACGCACCGGCTCAGAGGATTCACATCCGAAAGCTaGGCCCTGAACAAAGAGCAGGGTTTTTATAAGCGG | + |
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Preference number: 6 (lower is better) Translates to: GTHRLRGFTSES*ALNKEQGFYKR Trigger: CCGCTTATAAAAACCCTGCTCTTTGTTCAGGGCTCAGCTTTCGGATGTGAATCCTCTGAGCCGGTGCGTACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS TCA 72 bp | ACCGGCTCAGAGGATTCACATCCGAAAGCTGAGCCCTaGACAAAGAGCAGGGTTTTTATAAGCGGTCTTACA | + |
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Preference number: 6 (lower is better) Translates to: TGSEDSHPKAEP*TKSRVFISGLT Trigger: TGTAAGACCGCTTATAAAAACCCTGCTCTTTGTTCAGGGCTCAGCTTTCGGATGTGAATCCTCTGAGCCGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS CAA 72 bp | CAAGTGCTTGTCTTACAATCCGGTTTTGCTGGCACTTaGATGAGCAAGATTGGCTTTAGCCTCGGTGATGAT | + |
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Preference number: 6 (lower is better) Translates to: QVLVLQSGFAGT*MSKIGFSLGDD Trigger: ATCATCACCGAGGCTAAAGCCAATCTTGCTCATCAAAGTGCCAGCAAAACCGGATTGTAAGACAAGCACTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS TCA 72 bp | GTTCAACTTACAAAACTTCCTCCCTTTGACTCGGTATaGATCTCAAACCAAGTCCCAGGTAAACACTTAGGG | + |
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Preference number: 6 (lower is better) Translates to: VQLTKLPPFDSV*ISNQVPGKHLG Trigger: CCCTAAGTGTTTACCTGGGACTTGGTTTGAGATTCATACCGAGTCAAAGGGAGGAAGTTTTGTAAGTTGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS CAA 90 bp | TCCCCTTTTGTAACTCCATCTAGTGGCTTAGCCATCAGTGAGAAATaGGAATCCAGATACAGCAGAATCCTGCTGCCTTTAACTTCTAAT | + |
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Preference number: 6 (lower is better) Translates to: SPFVTPSSGLAISEK*ESRYSRILLPLTSN Trigger: ATTAGAAGTTAAAGGCAGCAGGATTCTGCTGTATCTGGATTCCAATTTCTCACTGATGGCTAAGCCACTAGATGGAGTTACAAAAGGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS CAA 72 bp | GGTAGATCTGGCTTTAAGATAGTAAGATTTACAGGATaGCAAGTGCTTGTCTTACAATCCGGTTTTGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: GRSGFKIVRFTG*QVLVLQSGFAG Trigger: GCCAGCAAAACCGGATTGTAAGACAAGCACTTGCAATCCTGTAAATCTTACTATCTTAAAGCCAGATCTACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS CAA 90 bp | GTTGTGGTTTGCTGGGCCAGTACATCTAATGCATTTGTTGTTTCATaGGTGATGATTTCAAGTTCTGCCTGCAATCTTATGATACGGTTA | + |
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Preference number: 6 (lower is better) Translates to: VVVCWASTSNAFVVS*VMISSSACNLMIRL Trigger: TAACCGTATCATAAGATTGCAGGCAGAACTTGAAATCATCACCAATGAAACAACAAATGCATTAGATGTACTGGCCCAGCAAACCACAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS CAA 72 bp | AGCATATATAAGGCTGGCCATTTCCTGGGTCACAGGTaGAATAGGTGGTTTGATTATAAGTACAAGTTCCTA | + |
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Preference number: 6 (lower is better) Translates to: SIYKAGHFLGHR*NRWFDYKYKFL Trigger: TAGGAACTTGTACTTATAATCAAACCACCTATTCAACCTGTGACCCAGGAAATGGCCAGCCTTATATATGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS GCA 72 bp | AGAACAGATTTGGATGAGGTGCTTTGTAGTCATCTCTaGCCTGCCACAAAGTTTTCCTTAATGTTTCATTAT | + |
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Preference number: 6 (lower is better) Translates to: RTDLDEVLCSHL*PATKFSLMFHY Trigger: ATAATGAAACATTAAGGAAAACTTTGTGGCAGGGCAGAGATGACTACAAAGCACCTCATCCAAATCTGTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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| CDS TCA 72 bp | GAGATAGTTCACAATCTCTGGTTCATGGATGTTAACTaGCAAATATCAAAGTATATGGATATAGCCACCCCA | + |
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Preference number: 6 (lower is better) Translates to: EIVHNLWFMDVN*QISKYMDIATP Trigger: TGGGGTGGCTATATCCATATACTTTGATATTTGTCAGTTAACATCCATGAACCAGAGATTGTGAACTATCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512200.1 |
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