Pregenerated sensors for LINC02698 (Homo sapiens)
Ensembl gene IDs: ENSG00000256717Ensembl transcript IDs: ENST00000539305.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAGGCATTACCTGGAGACGAGAGTCAGCAACTGAAGGCGCTTGGTTaGCTTTGGCAGAATCCAGTCCAGTGCAGAGGGAGGACCAGCACT | + |
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Preference number: 5 (lower is better) Translates to: EALPGDESQQLKALG*LWQNPVQCRGRTST Trigger: AGTGCTGGTCCTCCCTCTGCACTGGACTGGATTCTGCCAAAGTCAACCAAGCGCCTTCAGTTGCTGACTCTCGTCTCCAGGTAATGCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539305.1 |
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| CDS TCA 90 bp | TTGGGTCATATGCACCACCTCATCCGAGAAAGAATCCCAAGGAGTTaGGGCATTACCTGGAGACGAGAGTCAGCAACTGAAGGCGCTTGG | + |
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Preference number: 5 (lower is better) Translates to: LGHMHHLIRERIPRS*GITWRRESATEGAW Trigger: CCAAGCGCCTTCAGTTGCTGACTCTCGTCTCCAGGTAATGCCTCAACTCCTTGGGATTCTTTCTCGGATGAGGTGGTGCATATGACCCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539305.1 |
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| CDS GCA 90 bp | AATAAATTCAGGGACGCTACTGGGACACTTCCTAGTGGCATCATTTaGAGTGGTAAAAGTTCATGGATGTCTCTAGGCAGGATCAACGGC | + |
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Preference number: 5 (lower is better) Translates to: NKFRDATGTLPSGII*SGKSSWMSLGRING Trigger: GCCGTTGATCCTGCCTAGAGACATCCATGAACTTTTACCACTGCAAATGATGCCACTAGGAAGTGTCCCAGTAGCGTCCCTGAATTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539305.1 |
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| CDS CAA 72 bp | AGACGAGAGTCAGCAACTGAAGGCGCTTGGTTGACTTaGGCAGAATCCAGTCCAGTGCAGAGGGAGGACCAG | + |
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Preference number: 6 (lower is better) Translates to: RRESATEGAWLT*AESSPVQREDQ Trigger: CTGGTCCTCCCTCTGCACTGGACTGGATTCTGCCAAAGTCAACCAAGCGCCTTCAGTTGCTGACTCTCGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539305.1 |
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| CDS CAA 90 bp | ATTACCTGGAGACGAGAGTCAGCAACTGAAGGCGCTTGGTTGACTTaGGCAGAATCCAGTCCAGTGCAGAGGGAGGACCAGCACTACAAT | + |
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Preference number: 6 (lower is better) Translates to: ITWRRESATEGAWLT*AESSPVQREDQHYN Trigger: ATTGTAGTGCTGGTCCTCCCTCTGCACTGGACTGGATTCTGCCAAAGTCAACCAAGCGCCTTCAGTTGCTGACTCTCGTCTCCAGGTAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539305.1 |
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| CDS TCA 72 bp | ATGCACCACCTCATCCGAGAAAGAATCCCAAGGAGTTaGGGCATTACCTGGAGACGAGAGTCAGCAACTGAA | + |
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Preference number: 6 (lower is better) Translates to: MHHLIRERIPRS*GITWRRESATE Trigger: TTCAGTTGCTGACTCTCGTCTCCAGGTAATGCCTCAACTCCTTGGGATTCTTTCTCGGATGAGGTGGTGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539305.1 |
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| CDS GCA 72 bp | AGGGACGCTACTGGGACACTTCCTAGTGGCATCATTTaGAGTGGTAAAAGTTCATGGATGTCTCTAGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: RDATGTLPSGII*SGKSSWMSLGR Trigger: CCTGCCTAGAGACATCCATGAACTTTTACCACTGCAAATGATGCCACTAGGAAGTGTCCCAGTAGCGTCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539305.1 |
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| CDS CCA 72 bp | GTTTATTCCACTGAATTGGAAGTTGTAATGGCCTCCTaGATGTTTTGGGTTTCTCATACTCTTGGGAGAACA | + |
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Preference number: 6 (lower is better) Translates to: VYSTELEVVMAS*MFWVSHTLGRT Trigger: TGTTCTCCCAAGAGTATGAGAAACCCAAAACATCCAGGAGGCCATTACAACTTCCAATTCAGTGGAATAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539305.1 |
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| CDS CAA 72 bp | GTTTCCATGAGGAAACACAAAGTTTATTCCACTGAATaGGAAGTTGTAATGGCCTCCTGGATGTTTTGGGTT | + |
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Preference number: 6 (lower is better) Translates to: VSMRKHKVYSTE*EVVMASWMFWV Trigger: AACCCAAAACATCCAGGAGGCCATTACAACTTCCAATTCAGTGGAATAAACTTTGTGTTTCCTCATGGAAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539305.1 |
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| CDS TCA 72 bp | GTATGTTTCCATGAGGAAACACAAAGTTTATTCCACTaGATTGGAAGTTGTAATGGCCTCCTGGATGTTTTG | + |
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Preference number: 6 (lower is better) Translates to: VCFHEETQSLFH*IGSCNGLLDVL Trigger: CAAAACATCCAGGAGGCCATTACAACTTCCAATTCAGTGGAATAAACTTTGTGTTTCCTCATGGAAACATAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539305.1 |
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