Pregenerated sensors for LINC02683 (Homo sapiens)
Ensembl gene IDs: ENSG00000254438Ensembl transcript IDs: ENST00000532065.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAGATGCACCCAATGAGGGATGAGCTATATCAGTCTGGGGCAAGCTaGATTCTGAGAGGTCAGGGCCGATTGCAGGGAAGGGTCGGCAGA | + |
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Preference number: 5 (lower is better) Translates to: QMHPMRDELYQSGAS*ILRGQGRLQGRVGR Trigger: TCTGCCGACCCTTCCCTGCAATCGGCCCTGACCTCTCAGAATGCAGCTTGCCCCAGACTGATATAGCTCATCCCTCATTGGGTGCATCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS CCA 90 bp | ACGGTGACATATGTGTCCTATTTACTTCATCAGAACCAGGGTAGCTaGGCACAGATGCACCCAATGAGGGATGAGCTATATCAGTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: TVTYVSYLLHQNQGS*AQMHPMRDELYQSG Trigger: CCCAGACTGATATAGCTCATCCCTCATTGGGTGCATCTGTGCCCAGCTACCCTGGTTCTGATGAAGTAAATAGGACACATATGTCACCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS TCA 90 bp | TTTCCAAATTTATCTTTATCTAAAGAGACTCATGAGGCTCCACGGTaGCATATGTGTCCTATTTACTTCATCAGAACCAGGGTAGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: FPNLSLSKETHEAPR*HMCPIYFIRTRVAG Trigger: CCCAGCTACCCTGGTTCTGATGAAGTAAATAGGACACATATGTCACCGTGGAGCCTCATGAGTCTCTTTAGATAAAGATAAATTTGGAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS CCA 90 bp | TTTCTCATTGTCTTAAATACCCTCCTCCTCTACTCCTTGTTGCCTTaGATAACTCCTACACAACTTTTATTAGTCCAAGGCCTCTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: FLIVLNTLLLYSLLP*ITPTQLLLVQGLSS Trigger: TGAAGAGAGGCCTTGGACTAATAAAAGTTGTGTAGGAGTTATCCAAGGCAACAAGGAGTAGAGGAGGAGGGTATTTAAGACAATGAGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS CAA 72 bp | TCTGGGGCAAGCTGCATTCTGAGAGGTCAGGGCCGATaGCAGGGAAGGGTCGGCAGAAGGGCAGCACGAGGA | + |
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Preference number: 6 (lower is better) Translates to: SGASCILRGQGR*QGRVGRRAARG Trigger: TCCTCGTGCTGCCCTTCTGCCGACCCTTCCCTGCAATCGGCCCTGACCTCTCAGAATGCAGCTTGCCCCAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS CAA 90 bp | CTATATCAGTCTGGGGCAAGCTGCATTCTGAGAGGTCAGGGCCGATaGCAGGGAAGGGTCGGCAGAAGGGCAGCACGAGGACATCATCTC | + |
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Preference number: 6 (lower is better) Translates to: LYQSGASCILRGQGR*QGRVGRRAARGHHL Trigger: GAGATGATGTCCTCGTGCTGCCCTTCTGCCGACCCTTCCCTGCAATCGGCCCTGACCTCTCAGAATGCAGCTTGCCCCAGACTGATATAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS TCA 72 bp | GGGATGAGCTATATCAGTCTGGGGCAAGCTGCATTCTaGGAGGTCAGGGCCGATTGCAGGGAAGGGTCGGCA | + |
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Preference number: 6 (lower is better) Translates to: GMSYISLGQAAF*EVRADCREGSA Trigger: TGCCGACCCTTCCCTGCAATCGGCCCTGACCTCTCAGAATGCAGCTTGCCCCAGACTGATATAGCTCATCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS GCA 72 bp | CCAATGAGGGATGAGCTATATCAGTCTGGGGCAAGCTaGATTCTGAGAGGTCAGGGCCGATTGCAGGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: PMRDELYQSGAS*ILRGQGRLQGR Trigger: CCTTCCCTGCAATCGGCCCTGACCTCTCAGAATGCAGCTTGCCCCAGACTGATATAGCTCATCCCTCATTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS TCA 72 bp | ATCAGAACCAGGGTAGCTGGGCACAGATGCACCCAATaGGGGATGAGCTATATCAGTCTGGGGCAAGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: IRTRVAGHRCTQ*GMSYISLGQAA Trigger: TGCAGCTTGCCCCAGACTGATATAGCTCATCCCTCATTGGGTGCATCTGTGCCCAGCTACCCTGGTTCTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS CCA 72 bp | GATGAAGACCTTGAATATCACCAGGCCTCTGGAGACTaGTGTCGCAGGAGTACAATCCTGTCCTGGAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: DEDLEYHQASGD*CRRSTILSWKG Trigger: CCCTTTCCAGGACAGGATTGTACTCCTGCGACACCAGTCTCCAGAGGCCTGGTGATATTCAAGGTCTTCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS CCA 72 bp | GTCTTAAATACCCTCCTCCTCTACTCCTTGTTGCCTTaGATAACTCCTACACAACTTTTATTAGTCCAAGGC | + |
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Preference number: 6 (lower is better) Translates to: VLNTLLLYSLLP*ITPTQLLLVQG Trigger: GCCTTGGACTAATAAAAGTTGTGTAGGAGTTATCCAAGGCAACAAGGAGTAGAGGAGGAGGGTATTTAAGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS CAA 90 bp | TTCATTTTTCTCATTGTCTTAAATACCCTCCTCCTCTACTCCTTGTaGCCTTGGATAACTCCTACACAACTTTTATTAGTCCAAGGCCTC | + |
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Preference number: 6 (lower is better) Translates to: FIFLIVLNTLLLYSL*PWITPTQLLLVQGL Trigger: GAGGCCTTGGACTAATAAAAGTTGTGTAGGAGTTATCCAAGGCAACAAGGAGTAGAGGAGGAGGGTATTTAAGACAATGAGAAAAATGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS TCA 72 bp | TTATCTTTATCTAAAGAGACTCATGAGGCTCCACGGTaGCATATGTGTCCTATTTACTTCATCAGAACCAGG | + |
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Preference number: 6 (lower is better) Translates to: LSLSKETHEAPR*HMCPIYFIRTR Trigger: CCTGGTTCTGATGAAGTAAATAGGACACATATGTCACCGTGGAGCCTCATGAGTCTCTTTAGATAAAGATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS CAA 72 bp | CTCATTGTCTTAAATACCCTCCTCCTCTACTCCTTGTaGCCTTGGATAACTCCTACACAACTTTTATTAGTC | + |
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Preference number: 6 (lower is better) Translates to: LIVLNTLLLYSL*PWITPTQLLLV Trigger: GACTAATAAAAGTTGTGTAGGAGTTATCCAAGGCAACAAGGAGTAGAGGAGGAGGGTATTTAAGACAATGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS CAA 90 bp | TTATTCATTTTTCTCATTGTCTTAAATACCCTCCTCCTCTACTCCTaGTTGCCTTGGATAACTCCTACACAACTTTTATTAGTCCAAGGC | + |
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Preference number: 6 (lower is better) Translates to: LFIFLIVLNTLLLYS*LPWITPTQLLLVQG Trigger: GCCTTGGACTAATAAAAGTTGTGTAGGAGTTATCCAAGGCAACAAGGAGTAGAGGAGGAGGGTATTTAAGACAATGAGAAAAATGAATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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| CDS CAA 72 bp | TTTCTCATTGTCTTAAATACCCTCCTCCTCTACTCCTaGTTGCCTTGGATAACTCCTACACAACTTTTATTA | + |
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Preference number: 6 (lower is better) Translates to: FLIVLNTLLLYS*LPWITPTQLLL Trigger: TAATAAAAGTTGTGTAGGAGTTATCCAAGGCAACAAGGAGTAGAGGAGGAGGGTATTTAAGACAATGAGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000532065.1 |
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