Pregenerated sensors for LINC02676 (Homo sapiens)
Ensembl gene IDs: ENSG00000234752Ensembl transcript IDs: ENST00000447297.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GAATCAAGGGCTAACCAGGCTCAGCCGGTTCAGAGTTTGGTGCCGTaGCTAAAGAGAAAGAATCTCATTGTTTCTCTTCTGGTTCTGAGA | + |
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Preference number: 5 (lower is better) Translates to: ESRANQAQPVQSLVP*LKRKNLIVSLLVLR Trigger: TCTCAGAACCAGAAGAGAAACAATGAGATTCTTTCTCTTTAGCCACGGCACCAAACTCTGAACCGGCTGAGCCTGGTTAGCCCTTGATTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447297.1 |
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| CDS CCA 90 bp | TGTCCAATACTCTTCAAAAGTGTCAGGTCTTGCAAAATCGGTTTGTaGACTTGGCAGGAGTCCAGTTCAGGTTGTTCATCTTCATCGTTT | + |
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Preference number: 5 (lower is better) Translates to: CPILFKSVRSCKIGL*TWQESSSGCSSSSF Trigger: AAACGATGAAGATGAACAACCTGAACTGGACTCCTGCCAAGTCCACAAACCGATTTTGCAAGACCTGACACTTTTGAAGAGTATTGGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447297.1 |
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| CDS TCA 90 bp | AATCTCATTGTTTCTCTTCTGGTTCTGAGAATTGATATTGCTGGCTaGGACTGTCCTTTCCTTAGCAATTTGTATCCTTTGTTTAAAGTG | + |
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Preference number: 5 (lower is better) Translates to: NLIVSLLVLRIDIAG*DCPFLSNLYPLFKV Trigger: CACTTTAAACAAAGGATACAAATTGCTAAGGAAAGGACAGTCTCAGCCAGCAATATCAATTCTCAGAACCAGAAGAGAAACAATGAGATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447297.1 |
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| CDS CAA 72 bp | GAATCAAGGGCTAACCAGGCTCAGCCGGTTCAGAGTTaGGTGCCGTGGCTAAAGAGAAAGAATCTCATTGTT | + |
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Preference number: 6 (lower is better) Translates to: ESRANQAQPVQS*VPWLKRKNLIV Trigger: AACAATGAGATTCTTTCTCTTTAGCCACGGCACCAAACTCTGAACCGGCTGAGCCTGGTTAGCCCTTGATTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447297.1 |
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| CDS CAA 90 bp | AGCTGTCCAATACTCTTCAAAAGTGTCAGGTCTTGCAAAATCGGTTaGTGGACTTGGCAGGAGTCCAGTTCAGGTTGTTCATCTTCATCG | + |
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Preference number: 6 (lower is better) Translates to: SCPILFKSVRSCKIG*WTWQESSSGCSSSS Trigger: CGATGAAGATGAACAACCTGAACTGGACTCCTGCCAAGTCCACAAACCGATTTTGCAAGACCTGACACTTTTGAAGAGTATTGGACAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447297.1 |
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| CDS CCA 72 bp | AAAAGTGTCAGGTCTTGCAAAATCGGTTTGTGGACTTaGCAGGAGTCCAGTTCAGGTTGTTCATCTTCATCG | + |
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Preference number: 6 (lower is better) Translates to: KSVRSCKIGLWT*QESSSGCSSSS Trigger: CGATGAAGATGAACAACCTGAACTGGACTCCTGCCAAGTCCACAAACCGATTTTGCAAGACCTGACACTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447297.1 |
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| CDS CCA 72 bp | CTCTTCAAAAGTGTCAGGTCTTGCAAAATCGGTTTGTaGACTTGGCAGGAGTCCAGTTCAGGTTGTTCATCT | + |
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Preference number: 6 (lower is better) Translates to: LFKSVRSCKIGL*TWQESSSGCSS Trigger: AGATGAACAACCTGAACTGGACTCCTGCCAAGTCCACAAACCGATTTTGCAAGACCTGACACTTTTGAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447297.1 |
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| CDS CAA 72 bp | CAAAAGTGTCAGGTCTTGCAAAATCGGTTTGTGGACTaGGCAGGAGTCCAGTTCAGGTTGTTCATCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: QKCQVLQNRFVD*AGVQFRLFIFI Trigger: GATGAAGATGAACAACCTGAACTGGACTCCTGCCAAGTCCACAAACCGATTTTGCAAGACCTGACACTTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447297.1 |
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| CDS CAA 90 bp | TTATACAATGAATCAAGGGCTAACCAGGCTCAGCCGGTTCAGAGTTaGGTGCCGTGGCTAAAGAGAAAGAATCTCATTGTTTCTCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: LYNESRANQAQPVQS*VPWLKRKNLIVSLL Trigger: CAGAAGAGAAACAATGAGATTCTTTCTCTTTAGCCACGGCACCAAACTCTGAACCGGCTGAGCCTGGTTAGCCCTTGATTCATTGTATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447297.1 |
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| CDS GCA 72 bp | AATAGCTGTCCAATACTCTTCAAAAGTGTCAGGTCTTaGAAAATCGGTTTGTGGACTTGGCAGGAGTCCAGT | + |
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Preference number: 6 (lower is better) Translates to: NSCPILFKSVRS*KIGLWTWQESS Trigger: ACTGGACTCCTGCCAAGTCCACAAACCGATTTTGCAAGACCTGACACTTTTGAAGAGTATTGGACAGCTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447297.1 |
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| CDS CAA 72 bp | ATACTCTTCAAAAGTGTCAGGTCTTGCAAAATCGGTTaGTGGACTTGGCAGGAGTCCAGTTCAGGTTGTTCA | + |
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Preference number: 6 (lower is better) Translates to: ILFKSVRSCKIG*WTWQESSSGCS Trigger: TGAACAACCTGAACTGGACTCCTGCCAAGTCCACAAACCGATTTTGCAAGACCTGACACTTTTGAAGAGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447297.1 |
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| CDS TCA 72 bp | GTTTCTCTTCTGGTTCTGAGAATTGATATTGCTGGCTaGGACTGTCCTTTCCTTAGCAATTTGTATCCTTTG | + |
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Preference number: 6 (lower is better) Translates to: VSLLVLRIDIAG*DCPFLSNLYPL Trigger: CAAAGGATACAAATTGCTAAGGAAAGGACAGTCTCAGCCAGCAATATCAATTCTCAGAACCAGAAGAGAAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447297.1 |
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