Pregenerated sensors for LINC02661 (Homo sapiens)
Ensembl gene IDs: ENSG00000223381Ensembl transcript IDs: ENST00000421481.1, ENST00000653086.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCTTTCTCTCTAAGTACATGTGTCTTTATCTGCACACTGGGAGAATaGGGAGGAGCCTGGCCTCTTCAGTTCTTGTGTGGTGGCCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: SFSLSTCVFICTLGE*GGAWPLQFLCGGLA Trigger: TGCCAGGCCACCACACAAGAACTGAAGAGGCCAGGCTCCTCCCCATTCTCCCAGTGTGCAGATAAAGACACATGTACTTAGAGAGAAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653086.1 |
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| CDS TCA 90 bp | ACCATTATTGAAGAGGACAGAGCTGTCATGGACTCTGAGAGCAGGTaGCTCAACATCGTGCTTTGTGGACTGTGCAGGAAACACAGGATC | + |
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Preference number: 5 (lower is better) Translates to: TIIEEDRAVMDSESR*LNIVLCGLCRKHRI Trigger: GATCCTGTGTTTCCTGCACAGTCCACAAAGCACGATGTTGAGTCACCTGCTCTCAGAGTCCATGACAGCTCTGTCCTCTTCAATAATGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653086.1 |
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| CDS TCA 90 bp | CTGAGAGCAGCCAGTCTCCAGATAACAGATGCTTGTATCTCATATTaGGGGTCACCATGCACCATTATTGAAGAGGACAGAGCTGTCATG | + |
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Preference number: 5 (lower is better) Translates to: LRAASLQITDACISY*GSPCTIIEEDRAVM Trigger: CATGACAGCTCTGTCCTCTTCAATAATGGTGCATGGTGACCCTCAATATGAGATACAAGCATCTGTTATCTGGAGACTGGCTGCTCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000421481.1 ENST00000653086.1 |
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| CDS CCA 72 bp | GGGCCCACCTGCACACTGGGAGAATGGGGAGGAGCCTaGCCTCTTCAGTTCTTGTGTGGTGGCCTGGCATTC | + |
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Preference number: 6 (lower is better) Translates to: GPTCTLGEWGGA*PLQFLCGGLAF Trigger: GAATGCCAGGCCACCACACAAGAACTGAAGAGGCCAGGCTCCTCCCCATTCTCCCAGTGTGCAGGTGGGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000421481.1 |
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| CDS GCA 72 bp | TTTCTGCACATGCCTGCAATGGATGAGGGGCCCACCTaGACACTGGGAGAATGGGGAGGAGCCTGGCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: FLHMPAMDEGPT*TLGEWGGAWPL Trigger: AAGAGGCCAGGCTCCTCCCCATTCTCCCAGTGTGCAGGTGGGCCCCTCATCCATTGCAGGCATGTGCAGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000421481.1 |
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| CDS CCA 72 bp | GCAATGGATGAGGGGCCCACCTGCACACTGGGAGAATaGGGAGGAGCCTGGCCTCTTCAGTTCTTGTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: AMDEGPTCTLGE*GGAWPLQFLCG Trigger: ACCACACAAGAACTGAAGAGGCCAGGCTCCTCCCCATTCTCCCAGTGTGCAGGTGGGCCCCTCATCCATTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000421481.1 |
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| CDS CCA 72 bp | ACATGCCTGCAATGGATGAGGGGCCCACCTGCACACTaGGAGAATGGGGAGGAGCCTGGCCTCTTCAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: TCLQWMRGPPAH*ENGEEPGLFSS Trigger: AGAACTGAAGAGGCCAGGCTCCTCCCCATTCTCCCAGTGTGCAGGTGGGCCCCTCATCCATTGCAGGCATGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000421481.1 |
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| CDS CCA 72 bp | GAACCTGCCCAGGGTCTTTTCTGCACATGCCTGCAATaGATGAGGGGCCCACCTGCACACTGGGAGAATGGG | + |
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Preference number: 6 (lower is better) Translates to: EPAQGLFCTCLQ*MRGPPAHWENG Trigger: CCCATTCTCCCAGTGTGCAGGTGGGCCCCTCATCCATTGCAGGCATGTGCAGAAAAGACCCTGGGCAGGTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000421481.1 |
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| CDS CCA 72 bp | GTCTTTATCTGCACACTGGGAGAATGGGGAGGAGCCTaGCCTCTTCAGTTCTTGTGTGGTGGCCTGGCATTC | + |
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Preference number: 6 (lower is better) Translates to: VFICTLGEWGGA*PLQFLCGGLAF Trigger: GAATGCCAGGCCACCACACAAGAACTGAAGAGGCCAGGCTCCTCCCCATTCTCCCAGTGTGCAGATAAAGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653086.1 |
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| CDS GCA 72 bp | GAATCTCCGACTCACCCCACAAGTGTTTACATCAGATaGTTTTGTGCAGATGAGGGAACCTGCCCAGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: ESPTHPTSVYIR*FCADEGTCPGS Trigger: AGACCCTGGGCAGGTTCCCTCATCTGCACAAAAGCATCTGATGTAAACACTTGTGGGGTGAGTCGGAGATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000421481.1 |
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| CDS CAA 72 bp | CTTGTATCTCATATTGAGGGTCACCATGCACCATTATaGAAGAGGACAGAGCTGTCATGGACTCTGAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: LVSHIEGHHAPL*KRTELSWTLRA Trigger: TGCTCTCAGAGTCCATGACAGCTCTGTCCTCTTCAATAATGGTGCATGGTGACCCTCAATATGAGATACAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653086.1 |
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| CDS TCA 72 bp | GCCAGTCTCCAGATAACAGATGCTTGTATCTCATATTaGGGGTCACCATGCACCATTATTGAAGAGGACAGA | + |
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Preference number: 6 (lower is better) Translates to: ASLQITDACISY*GSPCTIIEEDR Trigger: TCTGTCCTCTTCAATAATGGTGCATGGTGACCCTCAATATGAGATACAAGCATCTGTTATCTGGAGACTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000421481.1 ENST00000653086.1 |
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| CDS GCA 72 bp | TTTTTCACTGAGAGCAGCCAGTCTCCAGATAACAGATaGTTGTATCTCATATTGAGGGTCACCATGCACCAT | + |
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Preference number: 6 (lower is better) Translates to: FFTESSQSPDNR*LYLILRVTMHH Trigger: ATGGTGCATGGTGACCCTCAATATGAGATACAAGCATCTGTTATCTGGAGACTGGCTGCTCTCAGTGAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000421481.1 ENST00000653086.1 |
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| CDS CAA 72 bp | TTCACTGAGAGCAGCCAGTCTCCAGATAACAGATGCTaGTATCTCATATTGAGGGTCACCATGCACCATTAT | + |
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Preference number: 6 (lower is better) Translates to: FTESSQSPDNRC*YLILRVTMHHY Trigger: ATAATGGTGCATGGTGACCCTCAATATGAGATACAAGCATCTGTTATCTGGAGACTGGCTGCTCTCAGTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000421481.1 ENST00000653086.1 |
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| CDS CCA 72 bp | TTTCTCTTCTTTACACAGCATCTCTTAGCTGGAGACTaGCTGCTCTATTTTCCAGGCAGCATGTATTTGAGA | + |
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Preference number: 6 (lower is better) Translates to: FLFFTQHLLAGD*LLYFPGSMYLR Trigger: TCTCAAATACATGCTGCCTGGAAAATAGAGCAGCCAGTCTCCAGCTAAGAGATGCTGTGTAAAGAAGAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653086.1 |
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| CDS CAA 72 bp | GGTAGATTCTGGGGCCAGGTATCCTGGACTCAAATTTaGTTTCTGCTGCTACATAGCTGTGTAACTTTAAAT | + |
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Preference number: 6 (lower is better) Translates to: GRFWGQVSWTQI*FLLLHSCVTLN Trigger: ATTTAAAGTTACACAGCTATGTAGCAGCAGAAACAAAATTTGAGTCCAGGATACCTGGCCCCAGAATCTACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653086.1 |
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