Pregenerated sensors for LINC02658 (Homo sapiens)
Ensembl gene IDs: ENSG00000234973Ensembl transcript IDs: ENST00000419406.1, ENST00000423349.5
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGATCTCATTTCCGGGATGTGTTTCCTGGCAGGCTTTCACTGTGGTaGAGTGGGAACAACGTGACCCCACAGCCCACTTCCTACTCTGTC | + |
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Preference number: 5 (lower is better) Translates to: RSHFRDVFPGRLSLW*SGNNVTPQPTSYSV Trigger: GACAGAGTAGGAAGTGGGCTGTGGGGTCACGTTGTTCCCACTTCACCACAGTGAAAGCCTGCCAGGAAACACATCCCGGAAATGAGATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419406.1 |
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| CDS CCA 90 bp | TCATTTCCGGGATGTGTTTCCTGGCAGGCTTTCACTGTGGTGAAGTaGGAACAACGTGACCCCACAGCCCACTTCCTACTCTGTCAGAAC | + |
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Preference number: 5 (lower is better) Translates to: SFPGCVSWQAFTVVK*EQRDPTAHFLLCQN Trigger: GTTCTGACAGAGTAGGAAGTGGGCTGTGGGGTCACGTTGTTCCCACTTCACCACAGTGAAAGCCTGCCAGGAAACACATCCCGGAAATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419406.1 |
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| CDS CCA 90 bp | GTCTACACATATGCAGTGATCAGCTCCCACGTCCATATGAGATCATaGAGGACAGGTGTCTGCCTGGTTTGTTACCTTCCCAGTACCTTC | + |
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Preference number: 5 (lower is better) Translates to: VYTYAVISSHVHMRS*RTGVCLVCYLPSTF Trigger: GAAGGTACTGGGAAGGTAACAAACCAGGCAGACACCTGTCCTCCATGATCTCATATGGACGTGGGAGCTGATCACTGCATATGTGTAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419406.1 |
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| CDS CCA 90 bp | GTCTACACATATGCAGTGATCAGCTCCCACGTCCATATGAGATCATaGAGGACAGGTGTCTGCCTGGTTTGTTACCTTCCCAGTACCTCT | + |
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Preference number: 5 (lower is better) Translates to: VYTYAVISSHVHMRS*RTGVCLVCYLPSTS Trigger: AGAGGTACTGGGAAGGTAACAAACCAGGCAGACACCTGTCCTCCATGATCTCATATGGACGTGGGAGCTGATCACTGCATATGTGTAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000423349.5 |
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| CDS GCA 90 bp | GTGATCAGCTCCCACGTCCATATGAGATCATGGAGGACAGGTGTCTaGCTGGTTTGTTACCTTCCCAGTACCTTCCTTGTATTTTCTAGA | + |
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Preference number: 5 (lower is better) Translates to: VISSHVHMRSWRTGV*LVCYLPSTFLVFSR Trigger: TCTAGAAAATACAAGGAAGGTACTGGGAAGGTAACAAACCAGGCAGACACCTGTCCTCCATGATCTCATATGGACGTGGGAGCTGATCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419406.1 |
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| CDS TCA 72 bp | CTGGCAGGCTTTCACTGTGGTGAAGTGGGAACAACGTaGCCCCACAGCCCACTTCCTACTCTGTCAGAACCT | + |
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Preference number: 6 (lower is better) Translates to: LAGFHCGEVGTT*PHSPLPTLSEP Trigger: AGGTTCTGACAGAGTAGGAAGTGGGCTGTGGGGTCACGTTGTTCCCACTTCACCACAGTGAAAGCCTGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419406.1 |
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| CDS CCA 72 bp | GGATGTGTTTCCTGGCAGGCTTTCACTGTGGTGAAGTaGGAACAACGTGACCCCACAGCCCACTTCCTACTC | + |
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Preference number: 6 (lower is better) Translates to: GCVSWQAFTVVK*EQRDPTAHFLL Trigger: GAGTAGGAAGTGGGCTGTGGGGTCACGTTGTTCCCACTTCACCACAGTGAAAGCCTGCCAGGAAACACATCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419406.1 |
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| CDS CCA 72 bp | TATGCAGTGATCAGCTCCCACGTCCATATGAGATCATaGAGGACAGGTGTCTGCCTGGTTTGTTACCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: YAVISSHVHMRS*RTGVCLVCYLP Trigger: GGGAAGGTAACAAACCAGGCAGACACCTGTCCTCCATGATCTCATATGGACGTGGGAGCTGATCACTGCATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000419406.1 ENST00000423349.5 |
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| CDS GCA 72 bp | TCCCACGTCCATATGAGATCATGGAGGACAGGTGTCTaGCTGGTTTGTTACCTTCCCAGTACCTTCCTTGTA | + |
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Preference number: 6 (lower is better) Translates to: SHVHMRSWRTGV*LVCYLPSTFLV Trigger: TACAAGGAAGGTACTGGGAAGGTAACAAACCAGGCAGACACCTGTCCTCCATGATCTCATATGGACGTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419406.1 |
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| CDS CAA 72 bp | CCATATGAGATCATGGAGGACAGGTGTCTGCCTGGTTaGTTACCTTCCCAGTACCTCTCAATAACCTTCAAA | + |
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Preference number: 6 (lower is better) Translates to: PYEIMEDRCLPG*LPSQYLSITFK Trigger: TTTGAAGGTTATTGAGAGGTACTGGGAAGGTAACAAACCAGGCAGACACCTGTCCTCCATGATCTCATATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000423349.5 |
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