Pregenerated sensors for LINC02653 (Homo sapiens)
Ensembl gene IDs: ENSG00000236373Ensembl transcript IDs: ENST00000418379.1, ENST00000660339.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTAGATGATCTGGCAGGTATTGCAGAAGGCTGTGATGCACAGGACTaGCTAAGGCTAATCAAGTGTATGATTGTGGAGGATAGCAAATTC | + |
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Preference number: 5 (lower is better) Translates to: VDDLAGIAEGCDAQD*LRLIKCMIVEDSKF Trigger: GAATTTGCTATCCTCCACAATCATACACTTGATTAGCCTTAGGCAGTCCTGTGCATCACAGCCTTCTGCAATACCTGCCAGATCATCTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660339.1 |
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| CDS CCA 90 bp | TTCTGTGGTCAGCATGGCTGGTTAAAGCCCTCTGGTGCCTTGTCCTaGTTCATTCAAACTGAAATGATTCTCTTACCAATTTTCCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: FCGQHGWLKPSGALS*FIQTEMILLPIFLV Trigger: GACCAGGAAAATTGGTAAGAGAATCATTTCAGTTTGAATGAACCAGGACAAGGCACCAGAGGGCTTTAACCAGCCATGCTGACCACAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS TCA 90 bp | TGGCTGGTTAAAGCCCTCTGGTGCCTTGTCCTGGTTCATTCAAACTaGAATGATTCTCTTACCAATTTTCCTGGTCTTTCTTCTTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: WLVKALWCLVLVHSN*NDSLTNFPGLSSSG Trigger: CCCTGAAGAAGAAAGACCAGGAAAATTGGTAAGAGAATCATTTCAGTTTGAATGAACCAGGACAAGGCACCAGAGGGCTTTAACCAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS TCA 90 bp | GAGGCCACATTCATCTTCTTTATATCCAGCACTGAACTAAGCAAATaGGAAGTTTGCCTAGCCAGGAACACACTTTTCATTAAGCTATCA | + |
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Preference number: 5 (lower is better) Translates to: EATFIFFISSTELSK*EVCLARNTLFIKLS Trigger: TGATAGCTTAATGAAAAGTGTGTTCCTGGCTAGGCAAACTTCTCATTTGCTTAGTTCAGTGCTGGATATAAAGAAGATGAATGTGGCCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS CCA 90 bp | AGTGGCAACTTTCTGGTAGAAATAAATTCTAAGGATATAATACCCTaGGTTTTCACCCTGTGGATAGTTGTTCAGTTTGGTGTTCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: SGNFLVEINSKDIIP*VFTLWIVVQFGVPA Trigger: TGCTGGAACACCAAACTGAACAACTATCCACAGGGTGAAAACCCAGGGTATTATATCCTTAGAATTTATTTCTACCAGAAAGTTGCCACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS CCA 90 bp | GTAGAAATAAATTCTAAGGATATAATACCCTGGGTTTTCACCCTGTaGATAGTTGTTCAGTTTGGTGTTCCAGCAGGAAGGATAATTAGT | + |
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Preference number: 5 (lower is better) Translates to: VEINSKDIIPWVFTL*IVVQFGVPAGRIIS Trigger: ACTAATTATCCTTCCTGCTGGAACACCAAACTGAACAACTATCCACAGGGTGAAAACCCAGGGTATTATATCCTTAGAATTTATTTCTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS CCA 90 bp | AAATACTCATCCAAACATACAAATGCAGGGATGGGTGGTTATAACTaGATCAGTAGTTGTGTCACTCCAAATCACAAATCTCTTGTTTTC | + |
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Preference number: 5 (lower is better) Translates to: KYSSKHTNAGMGGYN*ISSCVTPNHKSLVF Trigger: GAAAACAAGAGATTTGTGATTTGGAGTGACACAACTACTGATCCAGTTATAACCACCCATCCCTGCATTTGTATGTTTGGATGAGTATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660339.1 |
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| CDS TCA 90 bp | GTCAGAGGTTGGTTAGAAAAACAGAATATGCTTGAGATTTCAAACTaGAAGGGATGTAATACAGAGATTGGAAAGTTACCAAACCTTTGG | + |
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Preference number: 5 (lower is better) Translates to: VRGWLEKQNMLEISN*KGCNTEIGKLPNLW Trigger: CCAAAGGTTTGGTAACTTTCCAATCTCTGTATTACATCCCTTTCAGTTTGAAATCTCAAGCATATTCTGTTTTTCTAACCAACCTCTGAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000660339.1 |
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| CDS TCA 90 bp | ACATGCTATTCTCCATTTAGGAATGTAAAGCAACCCACAATCGTCTaGAGAAAGATACAGAACTCAAGAATTCATATAGTCAAAAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: TCYSPFRNVKQPTIV*RKIQNSRIHIVKSW Trigger: CCAGCTTTTGACTATATGAATTCTTGAGTTCTGTATCTTTCTTCAGACGATTGTGGGTTGCTTTACATTCCTAAATGGAGAATAGCATGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660339.1 |
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| CDS GCA 72 bp | CTGGCAGGTATTGCAGAAGGCTGTGATGCACAGGACTaGCTAAGGCTAATCAAGTGTATGATTGTGGAGGAT | + |
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Preference number: 6 (lower is better) Translates to: LAGIAEGCDAQD*LRLIKCMIVED Trigger: ATCCTCCACAATCATACACTTGATTAGCCTTAGGCAGTCCTGTGCATCACAGCCTTCTGCAATACCTGCCAG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660339.1 |
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| CDS CAA 72 bp | TTAAGTCTTCTAAGCCTTAGTCTTCTCGTCACCTCATaGATGCCTGGGCACAGCCTTAATTTAAGCCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: LSLLSLSLLVTS*MPGHSLNLSLP Trigger: GGGCAGGCTTAAATTAAGGCTGTGCCCAGGCATCAATGAGGTGACGAGAAGACTAAGGCTTAGAAGACTTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS CAA 90 bp | GCACCATTCTGTGGTCAGCATGGCTGGTTAAAGCCCTCTGGTGCCTaGTCCTGGTTCATTCAAACTGAAATGATTCTCTTACCAATTTTC | + |
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Preference number: 6 (lower is better) Translates to: APFCGQHGWLKPSGA*SWFIQTEMILLPIF Trigger: GAAAATTGGTAAGAGAATCATTTCAGTTTGAATGAACCAGGACAAGGCACCAGAGGGCTTTAACCAGCCATGCTGACCACAGAATGGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS CAA 72 bp | TGTGGTCAGCATGGCTGGTTAAAGCCCTCTGGTGCCTaGTCCTGGTTCATTCAAACTGAAATGATTCTCTTA | + |
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Preference number: 6 (lower is better) Translates to: CGQHGWLKPSGA*SWFIQTEMILL Trigger: TAAGAGAATCATTTCAGTTTGAATGAACCAGGACAAGGCACCAGAGGGCTTTAACCAGCCATGCTGACCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS CAA 90 bp | GCAAGTTACTTAAGTCTTCTAAGCCTTAGTCTTCTCGTCACCTCATaGATGCCTGGGCACAGCCTTAATTTAAGCCTGCCCTTTTTCCTT | + |
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Preference number: 6 (lower is better) Translates to: ASYLSLLSLSLLVTS*MPGHSLNLSLPFFL Trigger: AAGGAAAAAGGGCAGGCTTAAATTAAGGCTGTGCCCAGGCATCAATGAGGTGACGAGAAGACTAAGGCTTAGAAGACTTAAGTAACTTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS GCA 72 bp | AGGAAGTCATTCATCAAATCTTACCTCAGTTATCTCTaGAGTCCACGTGTTCATGCCACTGACTCGGGAATA | + |
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Preference number: 6 (lower is better) Translates to: RKSFIKSYLSYL*SPRVHATDSGI Trigger: TATTCCCGAGTCAGTGGCATGAACACGTGGACTGCAGAGATAACTGAGGTAAGATTTGATGAATGACTTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660339.1 |
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| CDS CCA 72 bp | CAGCATGGCTGGTTAAAGCCCTCTGGTGCCTTGTCCTaGTTCATTCAAACTGAAATGATTCTCTTACCAATT | + |
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Preference number: 6 (lower is better) Translates to: QHGWLKPSGALS*FIQTEMILLPI Trigger: AATTGGTAAGAGAATCATTTCAGTTTGAATGAACCAGGACAAGGCACCAGAGGGCTTTAACCAGCCATGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS CCA 72 bp | AATTCTAAGGATATAATACCCTGGGTTTTCACCCTGTaGATAGTTGTTCAGTTTGGTGTTCCAGCAGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: NSKDIIPWVFTL*IVVQFGVPAGR Trigger: CCTTCCTGCTGGAACACCAAACTGAACAACTATCCACAGGGTGAAAACCCAGGGTATTATATCCTTAGAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS CCA 72 bp | GTGGAGGATAGCAAATTCAAAAGGTGTAGGTCAGTCTaGAAATTCAAGGTAAGAGTTGATGTTGCAGTCCTG | + |
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Preference number: 6 (lower is better) Translates to: VEDSKFKRCRSV*KFKVRVDVAVL Trigger: CAGGACTGCAACATCAACTCTTACCTTGAATTTCCAGACTGACCTACACCTTTTGAATTTGCTATCCTCCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000660339.1 |
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| CDS TCA 72 bp | AAAGCCCTCTGGTGCCTTGTCCTGGTTCATTCAAACTaGAATGATTCTCTTACCAATTTTCCTGGTCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: KALWCLVLVHSN*NDSLTNFPGLS Trigger: AGAAAGACCAGGAAAATTGGTAAGAGAATCATTTCAGTTTGAATGAACCAGGACAAGGCACCAGAGGGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS TCA 72 bp | ACACAGACTACTCTTGGGATTATATGCATAGCCACCTaGTCACTCCATGACCTTTGCAAGTTACTTAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: TQTTLGIICIAT*SLHDLCKLLKS Trigger: AGACTTAAGTAACTTGCAAAGGTCATGGAGTGATCAGGTGGCTATGCATATAATCCCAAGAGTAGTCTGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS CCA 72 bp | TCCAAACATACAAATGCAGGGATGGGTGGTTATAACTaGATCAGTAGTTGTGTCACTCCAAATCACAAATCT | + |
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Preference number: 6 (lower is better) Translates to: SKHTNAGMGGYN*ISSCVTPNHKS Trigger: AGATTTGTGATTTGGAGTGACACAACTACTGATCCAGTTATAACCACCCATCCCTGCATTTGTATGTTTGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660339.1 |
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| CDS TCA 72 bp | TCATTAAGCTATCAGAATAATCATGTGGTCATTCTGTaGGGGATACAACAGAGAGGGAGAATTTCCACCTTT | + |
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Preference number: 6 (lower is better) Translates to: SLSYQNNHVVIL*GIQQRGRISTF Trigger: AAAGGTGGAAATTCTCCCTCTCTGTTGTATCCCTCACAGAATGACCACATGATTATTCTGATAGCTTAATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000418379.1 |
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| CDS CCA 72 bp | GGGCAGCTGTTGAAATTCTGCATATCAGTCAGAGGTTaGTTAGAAAAACAGAATATGCTTGAGATTTCAAAC | + |
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Preference number: 6 (lower is better) Translates to: GQLLKFCISVRG*LEKQNMLEISN Trigger: GTTTGAAATCTCAAGCATATTCTGTTTTTCTAACCAACCTCTGACTGATATGCAGAATTTCAACAGCTGCCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000660339.1 |
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