Pregenerated sensors for LINC02646 (Homo sapiens)
Ensembl gene IDs: ENSG00000236303Ensembl transcript IDs: ENST00000647943.1, ENST00000648275.1, ENST00000657871.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CAGGAGGCCTTCGCGGGAGCGAGGGTTCTTGTGGGAATGGGGGAATaGAACGCGCTCACACATCAGGAGCCCTGGTCCTGGAGGCTGAGT | + |
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Preference number: 5 (lower is better) Translates to: QEAFAGARVLVGMGE*NALTHQEPWSWRLS Trigger: ACTCAGCCTCCAGGACCAGGGCTCCTGATGTGTGAGCGCGTTCCATTCCCCCATTCCCACAAGAACCCTCGCTCCCGCGAAGGCCTCCTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000647943.1 ENST00000648275.1 |
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| CDS CCA 90 bp | CGCAAGCTCAGGAGGCCTTCGCGGGAGCGAGGGTTCTTGTGGGAATaGGGGAATGGAACGCGCTCACACATCAGGAGCCCTGGTCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: RKLRRPSRERGFLWE*GNGTRSHIRSPGPG Trigger: TCCAGGACCAGGGCTCCTGATGTGTGAGCGCGTTCCATTCCCCCATTCCCACAAGAACCCTCGCTCCCGCGAAGGCCTCCTGAGCTTGCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000647943.1 ENST00000648275.1 |
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| CDS CCA 90 bp | CGGACTCCGTGCACCCACAGTCTAAAGCAAGCGGTTAGACAGCCCTaGGCAGTGGAACCTCGCAGTCCTTTAGCGGTCCCCACGCCACTT | + |
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Preference number: 5 (lower is better) Translates to: RTPCTHSLKQAVRQP*AVEPRSPLAVPTPL Trigger: AAGTGGCGTGGGGACCGCTAAAGGACTGCGAGGTTCCACTGCCCAGGGCTGTCTAACCGCTTGCTTTAGACTGTGGGTGCACGGAGTCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000647943.1 ENST00000648275.1 |
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| CDS TCA 90 bp | ATGGAACGCGCTCACACATCAGGAGCCCTGGTCCTGGAGGCTGAGTaGCGGACTCCGTGCACCCACAGTCTAAAGCAAGCGGTTAGACAG | + |
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Preference number: 5 (lower is better) Translates to: MERAHTSGALVLEAE*RTPCTHSLKQAVRQ Trigger: CTGTCTAACCGCTTGCTTTAGACTGTGGGTGCACGGAGTCCGTCACTCAGCCTCCAGGACCAGGGCTCCTGATGTGTGAGCGCGTTCCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647943.1 ENST00000648275.1 |
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| CDS GCA 90 bp | CAAGTCCGCTGGAACCCCCAGGCAACGCGACTCCTCTCCTGCACCTaGATCTGCTCCCAAGAGCTGACAACCATCCACTTCTTGAGATCC | + |
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Preference number: 5 (lower is better) Translates to: QVRWNPQATRLLSCT*ICSQELTTIHFLRS Trigger: GGATCTCAAGAAGTGGATGGTTGTCAGCTCTTGGGAGCAGATGCAGGTGCAGGAGAGGAGTCGCGTTGCCTGGGGGTTCCAGCGGACTTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657871.1 |
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| CDS GCA 90 bp | CTGAACCAAGTCCGCTGGAACCCCCAGGCAACGCGACTCCTCTCCTaGACCTGCATCTGCTCCCAAGAGCTGACAACCATCCACTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: LNQVRWNPQATRLLS*TCICSQELTTIHFL Trigger: CAAGAAGTGGATGGTTGTCAGCTCTTGGGAGCAGATGCAGGTGCAGGAGAGGAGTCGCGTTGCCTGGGGGTTCCAGCGGACTTGGTTCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657871.1 |
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| CDS TCA 90 bp | GAGCCGAGGCCTCAGGTTTTCTTCTTCTTGAACCTAGGCTGCCTGTaGCTGAAAGGTTCTCCCTGGGGCCTGAAAGCTGAAGGGAACGAA | + |
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Preference number: 5 (lower is better) Translates to: EPRPQVFFFLNLGCL*LKGSPWGLKAEGNE Trigger: TTCGTTCCCTTCAGCTTTCAGGCCCCAGGGAGAACCTTTCAGTCACAGGCAGCCTAGGTTCAAGAAGAAGAAAACCTGAGGCCTCGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000647943.1 ENST00000648275.1 |
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| CDS CCA 72 bp | GAATGGAACGCGCTCACACATCAGGAGCCCTGGTCCTaGAGGCTGAGTGACGGACTCCGTGCACCCACAGTC | + |
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Preference number: 6 (lower is better) Translates to: EWNALTHQEPWS*RLSDGLRAPTV Trigger: GACTGTGGGTGCACGGAGTCCGTCACTCAGCCTCCAGGACCAGGGCTCCTGATGTGTGAGCGCGTTCCATTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647943.1 ENST00000648275.1 |
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| CDS CCA 72 bp | TTCGCGGGAGCGAGGGTTCTTGTGGGAATGGGGGAATaGAACGCGCTCACACATCAGGAGCCCTGGTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: FAGARVLVGMGE*NALTHQEPWSW Trigger: CCAGGACCAGGGCTCCTGATGTGTGAGCGCGTTCCATTCCCCCATTCCCACAAGAACCCTCGCTCCCGCGAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000647943.1 ENST00000648275.1 |
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| CDS CCA 72 bp | AGGAGGCCTTCGCGGGAGCGAGGGTTCTTGTGGGAATaGGGGAATGGAACGCGCTCACACATCAGGAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: RRPSRERGFLWE*GNGTRSHIRSP Trigger: AGGGCTCCTGATGTGTGAGCGCGTTCCATTCCCCCATTCCCACAAGAACCCTCGCTCCCGCGAAGGCCTCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000647943.1 ENST00000648275.1 |
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| CDS TCA 72 bp | ACGCGCTCACACATCAGGAGCCCTGGTCCTGGAGGCTaGGTGACGGACTCCGTGCACCCACAGTCTAAAGCA | + |
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Preference number: 6 (lower is better) Translates to: TRSHIRSPGPGG*VTDSVHPQSKA Trigger: TGCTTTAGACTGTGGGTGCACGGAGTCCGTCACTCAGCCTCCAGGACCAGGGCTCCTGATGTGTGAGCGCGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647943.1 ENST00000648275.1 |
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| CDS CCA 72 bp | TGCACCCACAGTCTAAAGCAAGCGGTTAGACAGCCCTaGGCAGTGGAACCTCGCAGTCCTTTAGCGGTCCCC | + |
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Preference number: 6 (lower is better) Translates to: CTHSLKQAVRQP*AVEPRSPLAVP Trigger: GGGGACCGCTAAAGGACTGCGAGGTTCCACTGCCCAGGGCTGTCTAACCGCTTGCTTTAGACTGTGGGTGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000647943.1 ENST00000648275.1 |
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| CDS CCA 72 bp | GACAAAATGACATCATGCCACCTGAACCAAGTCCGCTaGAACCCCCAGGCAACGCGACTCCTCTCCTGCACC | + |
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Preference number: 6 (lower is better) Translates to: DKMTSCHLNQVR*NPQATRLLSCT Trigger: GGTGCAGGAGAGGAGTCGCGTTGCCTGGGGGTTCCAGCGGACTTGGTTCAGGTGGCATGATGTCATTTTGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000657871.1 |
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| CDS CAA 90 bp | TGTTACAAGCTTTTACCAAACGACCAGCTCTTCCTTTTTCGAATGTaGTATTCTAATGACTGCATCCTATGCCACCGTAAGGCTCAGCCG | + |
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Preference number: 6 (lower is better) Translates to: CYKLLPNDQLFLFRM*YSNDCILCHRKAQP Trigger: CGGCTGAGCCTTACGGTGGCATAGGATGCAGTCATTAGAATACAACATTCGAAAAAGGAAGAGCTGGTCGTTTGGTAAAAGCTTGTAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647943.1 |
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| CDS GCA 72 bp | CTTTTTCGAATGTTGTATTCTAATGACTGCATCCTATaGCACCGTAAGGCTCAGCCGTGTTTCATTTGCACT | + |
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Preference number: 6 (lower is better) Translates to: LFRMLYSNDCIL*HRKAQPCFICT Trigger: AGTGCAAATGAAACACGGCTGAGCCTTACGGTGGCATAGGATGCAGTCATTAGAATACAACATTCGAAAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000647943.1 |
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| CDS CAA 72 bp | CTTTTACCAAACGACCAGCTCTTCCTTTTTCGAATGTaGTATTCTAATGACTGCATCCTATGCCACCGTAAG | + |
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Preference number: 6 (lower is better) Translates to: LLPNDQLFLFRM*YSNDCILCHRK Trigger: CTTACGGTGGCATAGGATGCAGTCATTAGAATACAACATTCGAAAAAGGAAGAGCTGGTCGTTTGGTAAAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647943.1 |
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