Pregenerated sensors for LINC02628 (Homo sapiens)
Ensembl gene IDs: ENSG00000226412Ensembl transcript IDs: ENST00000457848.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTCTTTTCCTTCAAGCTTTCCCTTAACGTGGTCCACACTCGAGGATaGTGGCTGGGTCTTTATCACAGGAGAATTTTCAGGTATTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: LFSFKLSLNVVHTRG*WLGLYHRRIFRYSA Trigger: TGCTGAATACCTGAAAATTCTCCTGTGATAAAGACCCAGCCAGCATCCTCGAGTGTGGACCACGTTAAGGGAAAGCTTGAAGGAAAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457848.1 |
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| CDS CCA 90 bp | CCTTCAAGCTTTCCCTTAACGTGGTCCACACTCGAGGATGCTGGCTaGGTCTTTATCACAGGAGAATTTTCAGGTATTCAGCAACTTAAG | + |
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Preference number: 5 (lower is better) Translates to: PSSFPLTWSTLEDAG*VFITGEFSGIQQLK Trigger: CTTAAGTTGCTGAATACCTGAAAATTCTCCTGTGATAAAGACCCAGCCAGCATCCTCGAGTGTGGACCACGTTAAGGGAAAGCTTGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457848.1 |
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| CDS TCA 90 bp | GGAGCAGTAAATCTTGTGGTTTTAAGCACTTTAAGTTATAGCTACTaGACAGCAAACACCCCATTGGCCATGCCAGGGAAGCTAGTGCTC | + |
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Preference number: 5 (lower is better) Translates to: GAVNLVVLSTLSYSY*TANTPLAMPGKLVL Trigger: GAGCACTAGCTTCCCTGGCATGGCCAATGGGGTGTTTGCTGTTCAGTAGCTATAACTTAAAGTGCTTAAAACCACAAGATTTACTGCTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457848.1 |
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| CDS CCA 90 bp | TTTTCCTTCAAGCTTTCCCTTAACGTGGTCCACACTCGAGGATGCTaGCTGGGTCTTTATCACAGGAGAATTTTCAGGTATTCAGCAACT | + |
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Preference number: 5 (lower is better) Translates to: FSFKLSLNVVHTRGC*LGLYHRRIFRYSAT Trigger: AGTTGCTGAATACCTGAAAATTCTCCTGTGATAAAGACCCAGCCAGCATCCTCGAGTGTGGACCACGTTAAGGGAAAGCTTGAAGGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457848.1 |
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| CDS GCA 90 bp | CTTTCATTCAGCACATTTATATTGAGGATCATTTACTTAGCATTATaGCCCAAAAATGCATTGTTGAAAAAGACAGATGTTCCTGCCCTT | + |
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Preference number: 5 (lower is better) Translates to: LSFSTFILRIIYLAL*PKNALLKKTDVPAL Trigger: AAGGGCAGGAACATCTGTCTTTTTCAACAATGCATTTTTGGGGCATAATGCTAAGTAAATGATCCTCAATATAAATGTGCTGAATGAAAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000457848.1 |
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| CDS CCA 72 bp | CAAAGTCTCTCTTTTCCTTCAAGCTTTCCCTTAACGTaGTCCACACTCGAGGATGCTGGCTGGGTCTTTATC | + |
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Preference number: 6 (lower is better) Translates to: QSLSFPSSFPLT*STLEDAGWVFI Trigger: GATAAAGACCCAGCCAGCATCCTCGAGTGTGGACCACGTTAAGGGAAAGCTTGAAGGAAAAGAGAGACTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457848.1 |
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| CDS CCA 72 bp | TTTCCCTTAACGTGGTCCACACTCGAGGATGCTGGCTaGGTCTTTATCACAGGAGAATTTTCAGGTATTCAG | + |
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Preference number: 6 (lower is better) Translates to: FPLTWSTLEDAG*VFITGEFSGIQ Trigger: CTGAATACCTGAAAATTCTCCTGTGATAAAGACCCAGCCAGCATCCTCGAGTGTGGACCACGTTAAGGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457848.1 |
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| CDS CCA 72 bp | AAGCTTTCCCTTAACGTGGTCCACACTCGAGGATGCTaGCTGGGTCTTTATCACAGGAGAATTTTCAGGTAT | + |
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Preference number: 6 (lower is better) Translates to: KLSLNVVHTRGC*LGLYHRRIFRY Trigger: ATACCTGAAAATTCTCCTGTGATAAAGACCCAGCCAGCATCCTCGAGTGTGGACCACGTTAAGGGAAAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457848.1 |
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| CDS TCA 72 bp | AGCCTCCTTTTCATACTAAATGTGTATCCCTGTCTCTaGAGCCATGGTGACACACAAATGATGAGAGTTGCT | + |
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Preference number: 6 (lower is better) Translates to: SLLFILNVYPCL*SHGDTQMMRVA Trigger: AGCAACTCTCATCATTTGTGTGTCACCATGGCTTCAGAGACAGGGATACACATTTAGTATGAAAAGGAGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457848.1 |
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