Pregenerated sensors for LINC02627 (Homo sapiens)
Ensembl gene IDs: ENSG00000229466Ensembl transcript IDs: ENST00000447757.2, ENST00000663554.1, ENST00000666271.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCCGTTCCCGCCCAGGCCAGTCAGCCCTATCTTTGGAACTGTGAATaGAATAACCACCGCACCTCCAGGCACAAAGGCTACCTGGGGTTC | + |
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Preference number: 5 (lower is better) Translates to: PVPAQASQPYLWNCE*NNHRTSRHKGYLGF Trigger: GAACCCCAGGTAGCCTTTGTGCCTGGAGGTGCGGTGGTTATTTCATTCACAGTTCCAAAGATAGGGCTGACTGGCCTGGGCGGGAACGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000447757.2 ENST00000666271.1 |
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| CDS CCA 90 bp | GCCAGACAACCAAGGAAGGGTCTTGGTGTCAGGGTATCACAACACTaGACTGTCCAGGATGAAAGGGATTGTAGAAGCCATTGGCCGTTG | + |
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Preference number: 5 (lower is better) Translates to: ARQPRKGLGVRVSQH*TVQDERDCRSHWPL Trigger: CAACGGCCAATGGCTTCTACAATCCCTTTCATCCTGGACAGTCCAGTGTTGTGATACCCTGACACCAAGACCCTTCCTTGGTTGTCTGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000447757.2 ENST00000663554.1 ENST00000666271.1 |
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| CDS GCA 90 bp | GGCCTGTTCTGCCAGTTATGGCATTGGCTTAATCCTCAGTCTGGTTaGACTTATGGACAGATGGCTGCCTATAACAATTGTCCTACCTGT | + |
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Preference number: 5 (lower is better) Translates to: GLFCQLWHWLNPQSG*TYGQMAAYNNCPTC Trigger: ACAGGTAGGACAATTGTTATAGGCAGCCATCTGTCCATAAGTGCAACCAGACTGAGGATTAAGCCAATGCCATAACTGGCAGAACAGGCC 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447757.2 ENST00000666271.1 |
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| CDS TCA 90 bp | ACATGCTCCCTGGAGTTCCACTTAGCAGATAATCAGTTGCTTTCATaGCTTTCAGCAAGAATGCCCATTTCCTGTGGGTCTGGATGGTCA | + |
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Preference number: 5 (lower is better) Translates to: TCSLEFHLADNQLLS*LSARMPISCGSGWS Trigger: TGACCATCCAGACCCACAGGAAATGGGCATTCTTGCTGAAAGTCATGAAAGCAACTGATTATCTGCTAAGTGGAACTCCAGGGAGCATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447757.2 ENST00000666271.1 |
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| CDS CCA 90 bp | TCCAGGCACAAAGGCTACCTGGGGTTCTTTGTTGGGAAGGAGAAATaGGGAAATGATGCTATTAGACAACTATTCATGTTAAATGCACTT | + |
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Preference number: 5 (lower is better) Translates to: SRHKGYLGFFVGKEK*GNDAIRQLFMLNAL Trigger: AAGTGCATTTAACATGAATAGTTGTCTAATAGCATCATTTCCCCATTTCTCCTTCCCAACAAAGAACCCCAGGTAGCCTTTGTGCCTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000447757.2 ENST00000666271.1 |
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| CDS CCA 90 bp | TATGGCATTGGCTTAATCCTCAGTCTGGTTGCACTTATGGACAGATaGCTGCCTATAACAATTGTCCTACCTGTTTCTTCATTCACATCA | + |
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Preference number: 5 (lower is better) Translates to: YGIGLILSLVALMDR*LPITIVLPVSSFTS Trigger: TGATGTGAATGAAGAAACAGGTAGGACAATTGTTATAGGCAGCCATCTGTCCATAAGTGCAACCAGACTGAGGATTAAGCCAATGCCATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447757.2 ENST00000666271.1 |
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| CDS CAA 72 bp | TGTGGCAGCACTGTGCCAGACAACCAAGGAAGGGTCTaGGTGTCAGGGTATCACAACACTGGACTGTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: CGSTVPDNQGRV*VSGYHNTGLSR Trigger: CCTGGACAGTCCAGTGTTGTGATACCCTGACACCAAGACCCTTCCTTGGTTGTCTGGCACAGTGCTGCCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000447757.2 ENST00000663554.1 ENST00000666271.1 |
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| CDS TCA 72 bp | GCCCAGGCCAGTCAGCCCTATCTTTGGAACTGTGAATaGAATAACCACCGCACCTCCAGGCACAAAGGCTAC | + |
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Preference number: 6 (lower is better) Translates to: AQASQPYLWNCE*NNHRTSRHKGY Trigger: GTAGCCTTTGTGCCTGGAGGTGCGGTGGTTATTTCATTCACAGTTCCAAAGATAGGGCTGACTGGCCTGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447757.2 ENST00000666271.1 |
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| CDS CCA 72 bp | CGTTGGCCGGGTGGCCTGTTCTGCCAGTTATGGCATTaGCTTAATCCTCAGTCTGGTTGCACTTATGGACAG | + |
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Preference number: 6 (lower is better) Translates to: RWPGGLFCQLWH*LNPQSGCTYGQ Trigger: CTGTCCATAAGTGCAACCAGACTGAGGATTAAGCCAATGCCATAACTGGCAGAACAGGCCACCCGGCCAACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447757.2 ENST00000666271.1 |
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| CDS CAA 90 bp | GAGATGGTATGTGGCAGCACTGTGCCAGACAACCAAGGAAGGGTCTaGGTGTCAGGGTATCACAACACTGGACTGTCCAGGATGAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: EMVCGSTVPDNQGRV*VSGYHNTGLSRMKG Trigger: CCCTTTCATCCTGGACAGTCCAGTGTTGTGATACCCTGACACCAAGACCCTTCCTTGGTTGTCTGGCACAGTGCTGCCACATACCATCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000447757.2 ENST00000663554.1 ENST00000666271.1 |
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| CDS CAA 72 bp | AGGATTCAGGTACATCAATCTCACAGCTCAGTAGCGTaGGCCGGGTGGCCTGTTCTGCCAGTTATGGCATTG | + |
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Preference number: 6 (lower is better) Translates to: RIQVHQSHSSVA*AGWPVLPVMAL Trigger: CAATGCCATAACTGGCAGAACAGGCCACCCGGCCAACGCTACTGAGCTGTGAGATTGATGTACCTGAATCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447757.2 ENST00000666271.1 |
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| CDS CAA 72 bp | CCACCCCCTGCCCCAATGTCTTCCAGAACACCTCTTTaGACAGGTAACTCATCAACTCCCAAGAAAGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: PPPAPMSSRTPL*TGNSSTPKKAQ Trigger: CTGGGCTTTCTTGGGAGTTGATGAGTTACCTGTCAAAAGAGGTGTTCTGGAAGACATTGGGGCAGGGGGTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000663554.1 |
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| CDS TCA 72 bp | ATCTTTTGTGGCTTCTCTGTCCTTATCAGTGTCTCCTaGGCTGGCCACTGTTTGCTGTCCACTGAATGGTCT | + |
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Preference number: 6 (lower is better) Translates to: IFCGFSVLISVS*AGHCLLSTEWS Trigger: AGACCATTCAGTGGACAGCAAACAGTGGCCAGCTCAGGAGACACTGATAAGGACAGAGAAGCCACAAAAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663554.1 |
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| CDS CAA 90 bp | ATAACCACCGCACCTCCAGGCACAAAGGCTACCTGGGGTTCTTTGTaGGGAAGGAGAAATGGGGAAATGATGCTATTAGACAACTATTCA | + |
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Preference number: 6 (lower is better) Translates to: ITTAPPGTKATWGSL*GRRNGEMMLLDNYS Trigger: TGAATAGTTGTCTAATAGCATCATTTCCCCATTTCTCCTTCCCAACAAAGAACCCCAGGTAGCCTTTGTGCCTGGAGGTGCGGTGGTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000447757.2 ENST00000666271.1 |
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| CDS TCA 72 bp | CTGGAGTTCCACTTAGCAGATAATCAGTTGCTTTCATaGCTTTCAGCAAGAATGCCCATTTCCTGTGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: LEFHLADNQLLS*LSARMPISCGS Trigger: AGACCCACAGGAAATGGGCATTCTTGCTGAAAGTCATGAAAGCAACTGATTATCTGCTAAGTGGAACTCCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447757.2 ENST00000666271.1 |
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| CDS GCA 72 bp | TGCCAGTTATGGCATTGGCTTAATCCTCAGTCTGGTTaGACTTATGGACAGATGGCTGCCTATAACAATTGT | + |
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Preference number: 6 (lower is better) Translates to: CQLWHWLNPQSG*TYGQMAAYNNC Trigger: ACAATTGTTATAGGCAGCCATCTGTCCATAAGTGCAACCAGACTGAGGATTAAGCCAATGCCATAACTGGCA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447757.2 ENST00000666271.1 |
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| CDS CCA 72 bp | GGCTTAATCCTCAGTCTGGTTGCACTTATGGACAGATaGCTGCCTATAACAATTGTCCTACCTGTTTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: GLILSLVALMDR*LPITIVLPVSS Trigger: TGAAGAAACAGGTAGGACAATTGTTATAGGCAGCCATCTGTCCATAAGTGCAACCAGACTGAGGATTAAGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447757.2 ENST00000666271.1 |
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| CDS TCA 72 bp | AGAGATATCCAAAAAGGGCTGCCCAAGAGGATGATCTaGGTCATTCTGAAGATGGTGTTTTTGTCTTTGTTG | + |
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Preference number: 6 (lower is better) Translates to: RDIQKGLPKRMI*VILKMVFLSLL Trigger: CAACAAAGACAAAAACACCATCTTCAGAATGACTCAGATCATCCTCTTGGGCAGCCCTTTTTGGATATCTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000447757.2 ENST00000663554.1 ENST00000666271.1 |
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