Pregenerated sensors for LINC02624 (Homo sapiens)
Ensembl gene IDs: ENSG00000229775Ensembl transcript IDs: ENST00000424701.1, ENST00000449761.5, ENST00000452286.1, ENST00000665336.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GATCTACCGGGCTTAAGATACAGAAGTAGGGTCAGAGTCAGAGTTTaGGCTGCTGCATCTGCACACAGTCAGGTACCGTCAGGATCCTCC | + |
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Preference number: 5 (lower is better) Translates to: DLPGLRYRSRVRVRV*AAASAHSQVPSGSS Trigger: GGAGGATCCTGACGGTACCTGACTGTGTGCAGATGCAGCAGCCCAAACTCTGACTCTGACCCTACTTCTGTATCTTAAGCCCGGTAGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424701.1 ENST00000665336.1 |
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| CDS CCA 90 bp | TTCCAGGTGTATCTGAACACTGGTGAAGGCAACATAGACTTTGCTTaGATTTTTCAGCCTTCAACAGGCCAAGCCGATGTCCACTTTATG | + |
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Preference number: 5 (lower is better) Translates to: FQVYLNTGEGNIDFA*IFQPSTGQADVHFM Trigger: CATAAAGTGGACATCGGCTTGGCCTGTTGAAGGCTGAAAAATCCAAGCAAAGTCTATGTTGCCTTCACCAGTGTTCAGATACACCTGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000449761.5 |
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| CDS TCA 90 bp | CTCCATCTTTTCAGAAAGCAGCTTCCAGGTGTATCTGAACACTGGTaGAGGCAACATAGACTTTGCTTGGATTTTTCAGCCTTCAACAGG | + |
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Preference number: 5 (lower is better) Translates to: LHLFRKQLPGVSEHW*RQHRLCLDFSAFNR Trigger: CCTGTTGAAGGCTGAAAAATCCAAGCAAAGTCTATGTTGCCTTCACCAGTGTTCAGATACACCTGGAAGCTGCTTTCTGAAAAGATGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000449761.5 |
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| CDS TCA 90 bp | GGTCTCCATCTTTTCAGAAAGCAGCCAGGTGTATCTGAACACTGGTaGAGGCAACATAGACTTTGCTTGGATTTTCAGCCTGACGAAATT | + |
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Preference number: 5 (lower is better) Translates to: GLHLFRKQPGVSEHW*RQHRLCLDFQPDEI Trigger: AATTTCGTCAGGCTGAAAATCCAAGCAAAGTCTATGTTGCCTTCACCAGTGTTCAGATACACCTGGCTGCTTTCTGAAAAGATGGAGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452286.1 |
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| CDS GCA 90 bp | CTTCAACAGGCCAAGCCGATGTCCACTTTATGGCATTTTCACATTTaGTTTTATATCCTTGGAATGTTGTGCCTCCTGATCTTCACCTTT | + |
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Preference number: 5 (lower is better) Translates to: LQQAKPMSTLWHFHI*FYILGMLCLLIFTF Trigger: AAAGGTGAAGATCAGGAGGCACAACATTCCAAGGATATAAAAGCAAATGTGAAAATGCCATAAAGTGGACATCGGCTTGGCCTGTTGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449761.5 |
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| CDS CCA 72 bp | GGCTTAAGATACAGAAGTAGGGTCAGAGTCAGAGTTTaGGCTGCTGCATCTGCACACAGTCAGGTACCGTCA | + |
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Preference number: 6 (lower is better) Translates to: GLRYRSRVRVRV*AAASAHSQVPS Trigger: TGACGGTACCTGACTGTGTGCAGATGCAGCAGCCCAAACTCTGACTCTGACCCTACTTCTGTATCTTAAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424701.1 ENST00000665336.1 |
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| CDS CCA 72 bp | CAGAGACATCAACCAGGAATTTCAGTAAGCCAGACCTaGGTCGGGCACACTGTTTCTCTACTTTCGTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: QRHQPGISVSQT*VGHTVSLLSLS Trigger: GGACAACGAAAGTAGAGAAACAGTGTGCCCGACCCAGGTCTGGCTTACTGAAATTCCTGGTTGATGTCTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000424701.1 ENST00000665336.1 |
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| CDS TCA 72 bp | GTTCAAGATCAAGGCACTGTCAGACTTAGCGTCTGGTaGGGGCTCACTTCCTGGTTCATAGTTGTCCATCTT | + |
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Preference number: 6 (lower is better) Translates to: VQDQGTVRLSVW*GLTSWFIVVHL Trigger: AAGATGGACAACTATGAACCAGGAAGTGAGCCCTCACCAGACGCTAAGTCTGACAGTGCCTTGATCTTGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449761.5 |
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| CDS CCA 72 bp | AGGTACCGTCAGGATCCTCCATGTGCACACCCTTCCTaGGAATGCAGGATTTTCAAATACCAGCATGTTTTC | + |
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Preference number: 6 (lower is better) Translates to: RYRQDPPCAHPS*ECRIFKYQHVF Trigger: GAAAACATGCTGGTATTTGAAAATCCTGCATTCCCAGGAAGGGTGTGCACATGGAGGATCCTGACGGTACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000424701.1 ENST00000665336.1 |
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| CDS CAA 90 bp | TCATCTCCTTTCACCAAAGTGGGTCCCCTGATTAACGAATCTCTTTaGGTTGTCATGACTAAACATTCTCGGGAAGTGGGAGAGGTGGGC | + |
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Preference number: 6 (lower is better) Translates to: SSPFTKVGPLINESL*VVMTKHSREVGEVG Trigger: GCCCACCTCTCCCACTTCCCGAGAATGTTTAGTCATGACAACCAAAAGAGATTCGTTAATCAGGGGACCCACTTTGGTGAAAGGAGATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424701.1 ENST00000665336.1 |
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| CDS TCA 72 bp | CTTCCAGTTTTAACATGCCATCCTCTCTCTGAATTCTaGAACAATTCTGCCCTCTCTGGCACCATTATCACC | + |
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Preference number: 6 (lower is better) Translates to: LPVLTCHPLSEF*NNSALSGTIIT Trigger: GGTGATAATGGTGCCAGAGAGGGCAGAATTGTTTCAGAATTCAGAGAGAGGATGGCATGTTAAAACTGGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424701.1 ENST00000665336.1 |
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| CDS TCA 72 bp | TTCAGAAAGCAGCTTCCAGGTGTATCTGAACACTGGTaGAGGCAACATAGACTTTGCTTGGATTTTTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: FRKQLPGVSEHW*RQHRLCLDFSA Trigger: GGCTGAAAAATCCAAGCAAAGTCTATGTTGCCTTCACCAGTGTTCAGATACACCTGGAAGCTGCTTTCTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000449761.5 |
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| CDS TCA 72 bp | CTTTTCAGAAAGCAGCCAGGTGTATCTGAACACTGGTaGAGGCAACATAGACTTTGCTTGGATTTTCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: LFRKQPGVSEHW*RQHRLCLDFQP Trigger: AGGCTGAAAATCCAAGCAAAGTCTATGTTGCCTTCACCAGTGTTCAGATACACCTGGCTGCTTTCTGAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452286.1 |
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| CDS CAA 72 bp | TTCACCAAAGTGGGTCCCCTGATTAACGAATCTCTTTaGGTTGTCATGACTAAACATTCTCGGGAAGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: FTKVGPLINESL*VVMTKHSREVG Trigger: TCCCACTTCCCGAGAATGTTTAGTCATGACAACCAAAAGAGATTCGTTAATCAGGGGACCCACTTTGGTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000424701.1 ENST00000665336.1 |
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| CDS TCA 72 bp | ATAAGGTCCGAATCTCATTTTCATAAACCTAGTAGCTaGCACGGTACCTGGCACGTCACCTACTCAATACAT | + |
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Preference number: 6 (lower is better) Translates to: IRSESHFHKPSS*HGTWHVTYSIH Trigger: ATGTATTGAGTAGGTGACGTGCCAGGTACCGTGTCAGCTACTAGGTTTATGAAAATGAGATTCGGACCTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665336.1 |
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| CDS GCA 72 bp | AGCATTCTTACTCTGATATACCTGGGTAGATCTTTTTaGATTCATCCTACTTGGGGTTCAATGGGCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: SILTLIYLGRSF*IHPTWGSMGFF Trigger: AAAGAAGCCCATTGAACCCCAAGTAGGATGAATGCAAAAAGATCTACCCAGGTATATCAGAGTAAGAATGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000452286.1 |
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| CDS GCA 72 bp | GTTTCCTGTGTCCAAGCAAAGTCATTTTCCACTTGCTaGTTGCAGTATTTTCTGTCTTTAGATTTCAGCATT | + |
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Preference number: 6 (lower is better) Translates to: VSCVQAKSFSTC*LQYFLSLDFSI Trigger: AATGCTGAAATCTAAAGACAGAAAATACTGCAAGCAGCAAGTGGAAAATGACTTTGCTTGGACACAGGAAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452286.1 |
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| CDS CAA 72 bp | TCCTGTGTCCAAGCAAAGTCATTTTCCACTTGCTGCTaGCAGTATTTTCTGTCTTTAGATTTCAGCATTCTT | + |
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Preference number: 6 (lower is better) Translates to: SCVQAKSFSTCC*QYFLSLDFSIL Trigger: AAGAATGCTGAAATCTAAAGACAGAAAATACTGCAAGCAGCAAGTGGAAAATGACTTTGCTTGGACACAGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452286.1 |
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