Pregenerated sensors for LINC02620 (Homo sapiens)
Ensembl gene IDs: ENSG00000225768Ensembl transcript IDs: ENST00000447860.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCAACACTCCTGCTGAGAGGAATGAGATCACCGTCCTTTCTTGGTTaGGGGGTCACCAACTCAGAAGCGAGAGTTGACGTATTCTTAGAG | + |
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Preference number: 5 (lower is better) Translates to: STLLLRGMRSPSFLG*GVTNSEARVDVFLE Trigger: CTCTAAGAATACGTCAACTCTCGCTTCTGAGTTGGTGACCCCTCAACCAAGAAAGGACGGTGATCTCATTCCTCTCAGCAGGAGTGTTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS TCA 90 bp | CTGACGACGCTCACATGGTGCCAAATCACAGCTTCTTCCTATGAATaGGCCACTCTCTGGTTCTCTTCAATCCCTTATAACCTACCTGGG | + |
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Preference number: 5 (lower is better) Translates to: LTTLTWCQITASSYE*ATLWFSSIPYNLPG Trigger: CCCAGGTAGGTTATAAGGGATTGAAGAGAACCAGAGAGTGGCTCATTCATAGGAAGAAGCTGTGATTTGGCACCATGTGAGCGTCGTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS TCA 90 bp | ACCGTCCTTTCTTGGTTGAGGGGTCACCAACTCAGAAGCGAGAGTTaGCGTATTCTTAGAGCTCCTGAAAGTGACACCAGTATCAAAGAC | + |
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Preference number: 5 (lower is better) Translates to: TVLSWLRGHQLRSES*RILRAPESDTSIKD Trigger: GTCTTTGATACTGGTGTCACTTTCAGGAGCTCTAAGAATACGTCAACTCTCGCTTCTGAGTTGGTGACCCCTCAACCAAGAAAGGACGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS GCA 90 bp | CTTTTCTCCCTTTCATTCTGCCTTAACAATTTCAGCTTCCAGCTCTaGATTGGTGACAATGGGCTAGTCTCTTCTTGGGAAAAGAAGAGC | + |
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Preference number: 5 (lower is better) Translates to: LFSLSFCLNNFSFQL*IGDNGLVSSWEKKS Trigger: GCTCTTCTTTTCCCAAGAAGAGACTAGCCCATTGTCACCAATGCAGAGCTGGAAGCTGAAATTGTTAAGGCAGAATGAAAGGGAGAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS GCA 90 bp | CTGGAGATTTATCAATATCTCACAACAACAAAGAACGTTGCTCAGTaGAATTTGACTCAGGTGTTGCTTTCTTCTCCAAAGTACCATCAC | + |
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Preference number: 5 (lower is better) Translates to: LEIYQYLTTTKNVAQ*NLTQVLLSSPKYHH Trigger: GTGATGGTACTTTGGAGAAGAAAGCAACACCTGAGTCAAATTGCACTGAGCAACGTTCTTTGTTGTTGTGAGATATTGATAAATCTCCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS CCA 90 bp | GAGAAGTGGATTTCAACCTGTGATTGGAATTCTGTGATTTGGATCTaGCTTGGAGATGTGTTTCATTGGGCCTACATGGTGTTTAAAATT | + |
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Preference number: 5 (lower is better) Translates to: EKWISTCDWNSVIWI*LGDVFHWAYMVFKI Trigger: AATTTTAAACACCATGTAGGCCCAATGAAACACATCTCCAAGCCAGATCCAAATCACAGAATTCCAATCACAGGTTGAAATCCACTTCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS GCA 90 bp | CAACTTTTAAAAACTGAGACATTTCACATACCAATTCAGGTTGAATaGTTCTCTTGGAGATTTGAAAGCTCTGGCAGTGTTGGATCTTCA | + |
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Preference number: 5 (lower is better) Translates to: QLLKTETFHIPIQVE*FSWRFESSGSVGSS Trigger: TGAAGATCCAACACTGCCAGAGCTTTCAAATCTCCAAGAGAAGCATTCAACCTGAATTGGTATGTGAAATGTCTCAGTTTTTAAAAGTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS TCA 72 bp | CTGCTGAGAGGAATGAGATCACCGTCCTTTCTTGGTTaGGGGGTCACCAACTCAGAAGCGAGAGTTGACGTA | + |
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Preference number: 6 (lower is better) Translates to: LLRGMRSPSFLG*GVTNSEARVDV Trigger: TACGTCAACTCTCGCTTCTGAGTTGGTGACCCCTCAACCAAGAAAGGACGGTGATCTCATTCCTCTCAGCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS TCA 72 bp | CTCACATGGTGCCAAATCACAGCTTCTTCCTATGAATaGGCCACTCTCTGGTTCTCTTCAATCCCTTATAAC | + |
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Preference number: 6 (lower is better) Translates to: LTWCQITASSYE*ATLWFSSIPYN Trigger: GTTATAAGGGATTGAAGAGAACCAGAGAGTGGCTCATTCATAGGAAGAAGCTGTGATTTGGCACCATGTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS GCA 72 bp | CTTTCATTCTGCCTTAACAATTTCAGCTTCCAGCTCTaGATTGGTGACAATGGGCTAGTCTCTTCTTGGGAA | + |
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Preference number: 6 (lower is better) Translates to: LSFCLNNFSFQL*IGDNGLVSSWE Trigger: TTCCCAAGAAGAGACTAGCCCATTGTCACCAATGCAGAGCTGGAAGCTGAAATTGTTAAGGCAGAATGAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS CCA 72 bp | CCATCACGTCTTCTTAACTTCGAGTTATCTTCTTCTTaGTGCTCAGGACGTGCTTTTCTCCCTTTCATTCTG | + |
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Preference number: 6 (lower is better) Translates to: PSRLLNFELSSS*CSGRAFLPFIL Trigger: CAGAATGAAAGGGAGAAAAGCACGTCCTGAGCACCAAGAAGAAGATAACTCGAAGTTAAGAAGACGTGATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS CCA 72 bp | ATTTCAACCTGTGATTGGAATTCTGTGATTTGGATCTaGCTTGGAGATGTGTTTCATTGGGCCTACATGGTG | + |
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Preference number: 6 (lower is better) Translates to: ISTCDWNSVIWI*LGDVFHWAYMV Trigger: CACCATGTAGGCCCAATGAAACACATCTCCAAGCCAGATCCAAATCACAGAATTCCAATCACAGGTTGAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS CAA 90 bp | CTCACAACAACAAAGAACGTTGCTCAGTGCAATTTGACTCAGGTGTaGCTTTCTTCTCCAAAGTACCATCACGTCTTCTTAACTTCGAGT | + |
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Preference number: 6 (lower is better) Translates to: LTTTKNVAQCNLTQV*LSSPKYHHVFLTSS Trigger: ACTCGAAGTTAAGAAGACGTGATGGTACTTTGGAGAAGAAAGCAACACCTGAGTCAAATTGCACTGAGCAACGTTCTTTGTTGTTGTGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS CAA 72 bp | ACAAAGAACGTTGCTCAGTGCAATTTGACTCAGGTGTaGCTTTCTTCTCCAAAGTACCATCACGTCTTCTTA | + |
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Preference number: 6 (lower is better) Translates to: TKNVAQCNLTQV*LSSPKYHHVFL Trigger: TAAGAAGACGTGATGGTACTTTGGAGAAGAAAGCAACACCTGAGTCAAATTGCACTGAGCAACGTTCTTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS GCA 72 bp | TATCAATATCTCACAACAACAAAGAACGTTGCTCAGTaGAATTTGACTCAGGTGTTGCTTTCTTCTCCAAAG | + |
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Preference number: 6 (lower is better) Translates to: YQYLTTTKNVAQ*NLTQVLLSSPK Trigger: CTTTGGAGAAGAAAGCAACACCTGAGTCAAATTGCACTGAGCAACGTTCTTTGTTGTTGTGAGATATTGATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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| CDS CAA 72 bp | ACATACCAATTCAGGTTGAATGCTTCTCTTGGAGATTaGAAAGCTCTGGCAGTGTTGGATCTTCATTTATCT | + |
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Preference number: 6 (lower is better) Translates to: TYQFRLNASLGD*KALAVLDLHLS Trigger: AGATAAATGAAGATCCAACACTGCCAGAGCTTTCAAATCTCCAAGAGAAGCATTCAACCTGAATTGGTATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447860.1 |
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