Pregenerated sensors for LINC02617 (Homo sapiens)
Ensembl gene IDs: ENSG00000256288Ensembl transcript IDs: ENST00000539009.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGGCTTCCGAGGCGATCCGGCAGCGTCAGTCTTCAGCTGCTAAGCTaGGAAAATCTGGGAAGGAGTCAGTCAGAGAGCCTTGGGCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: GLPRRSGSVSLQLLS*ENLGRSQSESLGPE Trigger: CTCTGGCCCAAGGCTCTCTGACTGACTCCTTCCCAGATTTTCTCAGCTTAGCAGCTGAAGACTGACGCTGCCGGATCGCCTCGGAAGCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539009.1 |
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| CDS TCA 90 bp | TTTAAAATTGGTGAGATGTTCCTTGGGCTGGTCGGTCTGAGGACCTaGGGTCATAGGTGGATCTTTCTCACGGAGCAAAGAACAGGAGTA | + |
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Preference number: 5 (lower is better) Translates to: FKIGEMFLGLVGLRT*GHRWIFLTEQRTGV Trigger: TACTCCTGTTCTTTGCTCCGTGAGAAAGATCCACCTATGACCTCAGGTCCTCAGACCGACCAGCCCAAGGAACATCTCACCAATTTTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539009.1 |
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| CDS TCA 90 bp | TGTCCTGATTTAAAATTGGTGAGATGTTCCTTGGGCTGGTCGGTCTaGGGACCTGAGGTCATAGGTGGATCTTTCTCACGGAGCAAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: CPDLKLVRCSLGWSV*GPEVIGGSFSRSKE Trigger: TTCTTTGCTCCGTGAGAAAGATCCACCTATGACCTCAGGTCCTCAGACCGACCAGCCCAAGGAACATCTCACCAATTTTAAATCAGGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539009.1 |
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| CDS CCA 72 bp | CAGTCAGAGAGCCTTGGGCCAGAGTTCCAGGGGCTCTaGGAGTGGCTGCCAGGTGAGTTGAACAGTCCGATT | + |
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Preference number: 6 (lower is better) Translates to: QSESLGPEFQGL*EWLPGELNSPI Trigger: AATCGGACTGTTCAACTCACCTGGCAGCCACTCCCAGAGCCCCTGGAACTCTGGCCCAAGGCTCTCTGACTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539009.1 |
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| CDS CCA 72 bp | GAGAGCCTTGGGCCAGAGTTCCAGGGGCTCTGGGAGTaGCTGCCAGGTGAGTTGAACAGTCCGATTTTCAGT | + |
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Preference number: 6 (lower is better) Translates to: ESLGPEFQGLWE*LPGELNSPIFS Trigger: ACTGAAAATCGGACTGTTCAACTCACCTGGCAGCCACTCCCAGAGCCCCTGGAACTCTGGCCCAAGGCTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000539009.1 |
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| CDS TCA 72 bp | GCCAGAGTTCCAGGGGCTCTGGGAGTGGCTGCCAGGTaGGTTGAACAGTCCGATTTTCAGTGGTGTCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: ARVPGALGVAAR*VEQSDFQWCPD Trigger: ATCAGGACACCACTGAAAATCGGACTGTTCAACTCACCTGGCAGCCACTCCCAGAGCCCCTGGAACTCTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000539009.1 |
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| CDS TCA 72 bp | GGTGAGATGTTCCTTGGGCTGGTCGGTCTGAGGACCTaGGGTCATAGGTGGATCTTTCTCACGGAGCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: GEMFLGLVGLRT*GHRWIFLTEQR Trigger: TCTTTGCTCCGTGAGAAAGATCCACCTATGACCTCAGGTCCTCAGACCGACCAGCCCAAGGAACATCTCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539009.1 |
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| CDS TCA 72 bp | AGGCGATCCGGCAGCGTCAGTCTTCAGCTGCTAAGCTaGGAAAATCTGGGAAGGAGTCAGTCAGAGAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: RRSGSVSLQLLS*ENLGRSQSESL Trigger: AAGGCTCTCTGACTGACTCCTTCCCAGATTTTCTCAGCTTAGCAGCTGAAGACTGACGCTGCCGGATCGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539009.1 |
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| CDS CAA 90 bp | ACCAAATTTCACACGCGTCCGTGTGAAGAGACCACCAAACAGGCTTaGTGTGAGCAACATGGCCGTTTATTTCACCTGGGTGCAGGCGGG | + |
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Preference number: 6 (lower is better) Translates to: TKFHTRPCEETTKQA*CEQHGRLFHLGAGG Trigger: CCCGCCTGCACCCAGGTGAAATAAACGGCCATGTTGCTCACACAAAGCCTGTTTGGTGGTCTCTTCACACGGACGCGTGTGAAATTTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539009.1 |
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| CDS CAA 72 bp | CACACGCGTCCGTGTGAAGAGACCACCAAACAGGCTTaGTGTGAGCAACATGGCCGTTTATTTCACCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: HTRPCEETTKQA*CEQHGRLFHLG Trigger: ACCCAGGTGAAATAAACGGCCATGTTGCTCACACAAAGCCTGTTTGGTGGTCTCTTCACACGGACGCGTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539009.1 |
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| CDS CAA 72 bp | CATGCGCGTCTGTATGAAGAGACCACCAAACAGGCTTaGTGTGAGCAACATGGCTGTTTATTTCACCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: HARLYEETTKQA*CEQHGCLFHLG Trigger: ACCCAGGTGAAATAAACAGCCATGTTGCTCACACAAAGCCTGTTTGGTGGTCTCTTCATACAGACGCGCATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539009.1 |
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