Pregenerated sensors for LINC02616 (Homo sapiens)
Ensembl gene IDs: ENSG00000261761Ensembl transcript IDs: ENST00000562049.1, ENST00000624352.1, ENST00000650887.2, ENST00000665248.1, ENST00000667203.1
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCTTCAAGGCTCTCGTCTCCTTTGCAAAACTTCTTGAACCACCACTaGACTGTACGTTCGTTAGCAGTTCCTGGGCCAAATGCTTTGTTA | + |
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Preference number: 5 (lower is better) Translates to: SSRLSSPLQNFLNHH*TVRSLAVPGPNALL Trigger: TAACAAAGCATTTGGCCCAGGAACTGCTAACGAACGTACAGTGCAGTGGTGGTTCAAGAAGTTTTGCAAAGGAGACGAGAGCCTTGAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS GCA 90 bp | TCTTTTGTCCTTACAGAACAGGCTGCTAGATGGTTTCATACTTCCTaGCTGCTGGTTCTGATTCAAATGGCCTTTCTGTTGATCTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: SFVLTEQAARWFHTS*LLVLIQMAFLLISP Trigger: AGGAGAGATCAACAGAAAGGCCATTTGAATCAGAACCAGCAGGCAGGAAGTATGAAACCATCTAGCAGCCTGTTCTGTAAGGACAAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000562049.1 ENST00000624352.1 ENST00000665248.1 |
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| CDS GCA 90 bp | GAACCACCACTGCACTGTACGTTCGTTAGCAGTTCCTGGGCCAAATaGTTTGTTAATGATGTGAATTGTCTTTGCTGCTTACTTTACGAC | + |
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Preference number: 5 (lower is better) Translates to: EPPLHCTFVSSSWAK*FVNDVNCLCCLLYD Trigger: GTCGTAAAGTAAGCAGCAAAGACAATTCACATCATTAACAAAGCATTTGGCCCAGGAACTGCTAACGAACGTACAGTGCAGTGGTGGTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS GCA 90 bp | ATTGTTTCCGTTGTAGAACAGGCTGCTAGATGGTTTCATACTTCCTaGCTGCTGGTTCTGATTCAAATGGCCTTTCTGTTGATCTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: IVSVVEQAARWFHTS*LLVLIQMAFLLISP Trigger: AGGAGAGATCAACAGAAAGGCCATTTGAATCAGAACCAGCAGGCAGGAAGTATGAAACCATCTAGCAGCCTGTTCTACAACGGAAACAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667203.1 |
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| CDS CCA 90 bp | CCTGTACATGCCATGGTACATGAACGACTTTTCCTATTTGACACTTaGATGAAAGGTCTCCAATGCCTCATTTGTTTCTCCTTCTTAGTG | + |
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Preference number: 5 (lower is better) Translates to: PVHAMVHERLFLFDT*MKGLQCLICFSFLV Trigger: CACTAAGAAGGAGAAACAAATGAGGCATTGGAGACCTTTCATCCAAGTGTCAAATAGGAAAAGTCGTTCATGTACCATGGCATGTACAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562049.1 |
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| CDS CCA 90 bp | TACTGGATAGGTAATAACAGTGTAAGACACAACAGTATTCAAACTTaGCCCCCATACAGTTTAGAGCCACACTCTGGGGATCTGATCATA | + |
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Preference number: 5 (lower is better) Translates to: YWIGNNSVRHNSIQT*PPYSLEPHSGDLII Trigger: TATGATCAGATCCCCAGAGTGTGGCTCTAAACTGTATGGGGGCCAAGTTTGAATACTGTTGTGTCTTACACTGTTATTACCTATCCAGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000562049.1 |
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| CDS GCA 90 bp | GTCGCTAGAATTTGCTTTTTATCTAACATTGTTTCCGTTGTTTCCTaGCTGCTGGTTCTGATTCAAATGGCCTTTCTGTTGATCTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: VARICFLSNIVSVVS*LLVLIQMAFLLISP Trigger: AGGAGAGATCAACAGAAAGGCCATTTGAATCAGAACCAGCAGGCAGGAAACAACGGAAACAATGTTAGATAAAAAGCAAATTCTAGCGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650887.2 |
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| CDS CCA 90 bp | TGCTTTTTATCTAACATTGTTTCCGTTGTAGAACAGGCTGCTAGATaGTTTCATACTTCCTGCCTGCTGGTTCTGATTCAAATGGCCTTT | + |
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Preference number: 5 (lower is better) Translates to: CFLSNIVSVVEQAAR*FHTSCLLVLIQMAF Trigger: AAAGGCCATTTGAATCAGAACCAGCAGGCAGGAAGTATGAAACCATCTAGCAGCCTGTTCTACAACGGAAACAATGTTAGATAAAAAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000667203.1 |
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| CDS GCA 90 bp | ACTTTACGACCCATTTTGAACTCAAATAAGAAAGTCGCTAGAATTTaGTTTTTATCTAACATTGTTTCCGTTGTTTCCTGCCTGCTGGTT | + |
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Preference number: 5 (lower is better) Translates to: TLRPILNSNKKVARI*FLSNIVSVVSCLLV Trigger: AACCAGCAGGCAGGAAACAACGGAAACAATGTTAGATAAAAAGCAAATTCTAGCGACTTTCTTATTTGAGTTCAAAATGGGTCGTAAAGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650887.2 |
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| CDS GCA 90 bp | ACTTTACGACCCATTTTGAACTCAAATAAGAAAGTCGCTAGAATTTaGTTTTTATCTAACATTGTTTCCGTTGTAGAACAGGCTGCTAGA | + |
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Preference number: 5 (lower is better) Translates to: TLRPILNSNKKVARI*FLSNIVSVVEQAAR Trigger: TCTAGCAGCCTGTTCTACAACGGAAACAATGTTAGATAAAAAGCAAATTCTAGCGACTTTCTTATTTGAGTTCAAAATGGGTCGTAAAGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000667203.1 |
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| CDS CAA 72 bp | ACCTTTATTGGTGCAAGTTTGGCTTTGGGAAGTGCCTaGGAGTGTCTTCTCGGCCCAACCACTGAGCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: TFIGASLALGSA*ECLLGPTTELV Trigger: GACCAGCTCAGTGGTTGGGCCGAGAAGACACTCCAAGGCACTTCCCAAAGCCAAACTTGCACCAATAAAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS GCA 72 bp | GCTTTGGGATCCGACGAACCCTTGGAAAGCATTTTCTaGATCCTGCTGGTTGTGGAAGCATTTTCCCTGCAA | + |
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Preference number: 6 (lower is better) Translates to: ALGSDEPLESIF*ILLVVEAFSLQ Trigger: TTGCAGGGAAAATGCTTCCACAACCAGCAGGATGCAGAAAATGCTTTCCAAGGGTTCGTCGGATCCCAAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CCA 72 bp | GGCAGCAGACCATCAAACAGTGACCATGACCTTTATTaGTGCAAGTTTGGCTTTGGGAAGTGCCTTGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: GSRPSNSDHDLY*CKFGFGKCLGV Trigger: CACTCCAAGGCACTTCCCAAAGCCAAACTTGCACCAATAAAGGTCATGGTCACTGTTTGATGGTCTGCTGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CAA 72 bp | CCACTACGCTCCTCATCTTCAAGGCTCTCGTCTCCTTaGCAAAACTTCTTGAACCACCACTGCACTGTACGT | + |
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Preference number: 6 (lower is better) Translates to: PLRSSSSRLSSP*QNFLNHHCTVR Trigger: ACGTACAGTGCAGTGGTGGTTCAAGAAGTTTTGCAAAGGAGACGAGAGCCTTGAAGATGAGGAGCGTAGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS TCA 72 bp | TTTGATGATTGCTCTCAATTGGTCACTGTCAACTTCTaGTGGCCGGCCACTACGCTCCTCATCTTCAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: FDDCSQLVTVNF*WPATTLLIFKA Trigger: AGCCTTGAAGATGAGGAGCGTAGTGGCCGGCCATCAGAAGTTGACAGTGACCAATTGAGAGCAATCATCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS GCA 72 bp | CTCTCGTCTCCTTTGCAAAACTTCTTGAACCACCACTaGACTGTACGTTCGTTAGCAGTTCCTGGGCCAAAT | + |
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Preference number: 6 (lower is better) Translates to: LSSPLQNFLNHH*TVRSLAVPGPN Trigger: ATTTGGCCCAGGAACTGCTAACGAACGTACAGTGCAGTGGTGGTTCAAGAAGTTTTGCAAAGGAGACGAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CAA 72 bp | CATCAAACAGTGACCATGACCTTTATTGGTGCAAGTTaGGCTTTGGGAAGTGCCTTGGAGTGTCTTCTCGGC | + |
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Preference number: 6 (lower is better) Translates to: HQTVTMTFIGAS*ALGSALECLLG Trigger: GCCGAGAAGACACTCCAAGGCACTTCCCAAAGCCAAACTTGCACCAATAAAGGTCATGGTCACTGTTTGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS TCA 72 bp | GCAGTTGGCTGTTGTAGAGAATTGGGCCCTTTCTGTTaGCTAATGCCAACTGCAGGTGTTGCAGTTTTTGGT | + |
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Preference number: 6 (lower is better) Translates to: AVGCCRELGPFC*LMPTAGVAVFG Trigger: ACCAAAAACTGCAACACCTGCAGTTGGCATTAGTCAACAGAAAGGGCCCAATTCTCTACAACAGCCAACTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS GCA 72 bp | AGCAGACCATCAAACAGTGACCATGACCTTTATTGGTaGAAGTTTGGCTTTGGGAAGTGCCTTGGAGTGTCT | + |
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Preference number: 6 (lower is better) Translates to: SRPSNSDHDLYW*KFGFGKCLGVS Trigger: AGACACTCCAAGGCACTTCCCAAAGCCAAACTTGCACCAATAAAGGTCATGGTCACTGTTTGATGGTCTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CAA 72 bp | GGGATGCCCTCTTTTTGGGCAAGCACTGGCATCACATaGGTTAGAGAAATGAGTTTTCAGTGGGACACCTTA | + |
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Preference number: 6 (lower is better) Translates to: GMPSFWASTGIT*VREMSFQWDTL Trigger: TAAGGTGTCCCACTGAAAACTCATTTCTCTAACCAATGTGATGCCAGTGCTTGCCCAAAAAGAGGGCATCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000562049.1 |
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| CDS CAA 90 bp | TATTTCGAAGGGATGCCCTCTTTTTGGGCAAGCACTGGCATCACATaGGTTAGAGAAATGAGTTTTCAGTGGGACACCTTACTGTCCCAA | + |
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Preference number: 6 (lower is better) Translates to: YFEGMPSFWASTGIT*VREMSFQWDTLLSQ Trigger: TTGGGACAGTAAGGTGTCCCACTGAAAACTCATTTCTCTAACCAATGTGATGCCAGTGCTTGCCCAAAAAGAGGGCATCCCTTCGAAATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000562049.1 |
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| CDS TCA 72 bp | CTTGAAGAAGTGGTAGTTGGTTGGCAAGGGGTCAGGTaGATATGGTGGATAAAGCAAAAACTTCCCACCTCA | + |
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Preference number: 6 (lower is better) Translates to: LEEVVVGWQGVR*IWWIKQKLPTS Trigger: TGAGGTGGGAAGTTTTTGCTTTATCCACCATATTCACCTGACCCCTTGCCAACCAACTACCACTTCTTCAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CAA 72 bp | TCATCTTCAAGGCTCTCGTCTCCTTTGCAAAACTTCTaGAACCACCACTGCACTGTACGTTCGTTAGCAGTT | + |
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Preference number: 6 (lower is better) Translates to: SSSRLSSPLQNF*NHHCTVRSLAV Trigger: AACTGCTAACGAACGTACAGTGCAGTGGTGGTTCAAGAAGTTTTGCAAAGGAGACGAGAGCCTTGAAGATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CAA 72 bp | AGCATAAAAATCCATGCTTTGGGATCCGACGAACCCTaGGAAAGCATTTTCTGCATCCTGCTGGTTGTGGAA | + |
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Preference number: 6 (lower is better) Translates to: SIKIHALGSDEP*ESIFCILLVVE Trigger: TTCCACAACCAGCAGGATGCAGAAAATGCTTTCCAAGGGTTCGTCGGATCCCAAAGCATGGATTTTTATGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS TCA 72 bp | TTTGGGCAAGCACTGGCATCACATTGGTTAGAGAAATaGGTTTTCAGTGGGACACCTTACTGTCCCAATCAA | + |
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Preference number: 6 (lower is better) Translates to: FGQALASHWLEK*VFSGTPYCPNQ Trigger: TTGATTGGGACAGTAAGGTGTCCCACTGAAAACTCATTTCTCTAACCAATGTGATGCCAGTGCTTGCCCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562049.1 |
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| CDS TCA 72 bp | ACCTCAATTTGTTCAACTTTTGAAGTATTGGTGGTGTaGCGTGCAGTTGGCTGTTGTAGAGAATTGGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: TSICSTFEVLVV*RAVGCCRELGP Trigger: AGGGCCCAATTCTCTACAACAGCCAACTGCACGTCACACCACCAATACTTCAAAAGTTGAACAAATTGAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CCA 72 bp | GAACCACCACTGCACTGTACGTTCGTTAGCAGTTCCTaGGCCAAATGCTTTGTTAATGATGTGAATTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: EPPLHCTFVSSS*AKCFVNDVNCL Trigger: AAGACAATTCACATCATTAACAAAGCATTTGGCCCAGGAACTGCTAACGAACGTACAGTGCAGTGGTGGTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CAA 90 bp | CAGCTTATCAGACACCCACTTATCGAGCTTTTTCACCTTTCTGATTaGCTTCAAATGCTGAACAACCGTAGAATGGTCGACATTGACTCC | + |
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Preference number: 6 (lower is better) Translates to: QLIRHPLIELFHLSD*LQMLNNRRMVDIDS Trigger: GGAGTCAATGTCGACCATTCTACGGTTGTTCAGCATTTGAAGCAAATCAGAAAGGTGAAAAAGCTCGATAAGTGGGTGTCTGATAAGCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CCA 72 bp | TTCCCACCTCAATTTGTTCAACTTTTGAAGTATTGGTaGTGTGACGTGCAGTTGGCTGTTGTAGAGAATTGG | + |
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Preference number: 6 (lower is better) Translates to: FPPQFVQLLKYW*CDVQLAVVENW Trigger: CCAATTCTCTACAACAGCCAACTGCACGTCACACCACCAATACTTCAAAAGTTGAACAAATTGAGGTGGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CCA 72 bp | TCTAACATTGTTTCCGTTGTAGAACAGGCTGCTAGATaGTTTCATACTTCCTGCCTGCTGGTTCTGATTCAA | + |
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Preference number: 6 (lower is better) Translates to: SNIVSVVEQAAR*FHTSCLLVLIQ Trigger: TTGAATCAGAACCAGCAGGCAGGAAGTATGAAACCATCTAGCAGCCTGTTCTACAACGGAAACAATGTTAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667203.1 |
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| CDS TCA 72 bp | TTCCTGCTGTGCCATACACCAGTAGGTCTTACCTCCTaGATAATTTCTAAGACAATGGGAAACTCAACAAAG | + |
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Preference number: 6 (lower is better) Translates to: FLLCHTPVGLTS*IISKTMGNSTK Trigger: CTTTGTTGAGTTTCCCATTGTCTTAGAAATTATTCAGGAGGTAAGACCTACTGGTGTATGGCACAGCAGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000562049.1 ENST00000624352.1 ENST00000665248.1 |
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| CDS TCA 72 bp | TCGAGCTTTTTCACCTTTCTGATTTGCTTCAAATGCTaGACAACCGTAGAATGGTCGACATTGACTCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SSFFTFLICFKC*TTVEWSTLTPS Trigger: TGAAGGAGTCAATGTCGACCATTCTACGGTTGTTCAGCATTTGAAGCAAATCAGAAAGGTGAAAAAGCTCGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CAA 72 bp | TCCTGCCTGCTGGTTCTGATTCAAATGGCCTTTCTGTaGATCTCTCCTATTTATTCCCCAATTCTGGAATAT | + |
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Preference number: 6 (lower is better) Translates to: SCLLVLIQMAFL*ISPIYSPILEY Trigger: ATATTCCAGAATTGGGGAATAAATAGGAGAGATCAACAGAAAGGCCATTTGAATCAGAACCAGCAGGCAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000562049.1 ENST00000624352.1 ENST00000650887.2 ENST00000665248.1 ENST00000667203.1 |
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| CDS CAA 90 bp | TCCGTTGTTTCCTGCCTGCTGGTTCTGATTCAAATGGCCTTTCTGTaGATCTCTCCTATTTATTCCCCAATTCTGGAATATTCTTGTACT | + |
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Preference number: 6 (lower is better) Translates to: SVVSCLLVLIQMAFL*ISPIYSPILEYSCT Trigger: AGTACAAGAATATTCCAGAATTGGGGAATAAATAGGAGAGATCAACAGAAAGGCCATTTGAATCAGAACCAGCAGGCAGGAAACAACGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650887.2 |
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| CDS CAA 72 bp | TATTGTTTTTCCAACACCTTGTCTTCAATTATGCTGTaGGCTTGCATGGCTTGTATGTCCCATTTGACTGAG | + |
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Preference number: 6 (lower is better) Translates to: YCFSNTLSSIML*ACMACMSHLTE Trigger: CTCAGTCAAATGGGACATACAAGCCATGCAAGCCAACAGCATAATTGAAGACAAGGTGTTGGAAAAACAATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000562049.1 ENST00000624352.1 ENST00000650887.2 ENST00000665248.1 ENST00000667203.1 |
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| CDS CAA 72 bp | TCAGCAACTTTTCATGCAGTTGTAAGAGCATCAGCTTaGATGATTGCTCTCAATTGGTCACTGTCAACTTCT | + |
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Preference number: 6 (lower is better) Translates to: SATFHAVVRASA*MIALNWSLSTS Trigger: AGAAGTTGACAGTGACCAATTGAGAGCAATCATCAAAGCTGATGCTCTTACAACTGCATGAAAAGTTGCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CAA 90 bp | TTTCATACTTCCTGCCTGCTGGTTCTGATTCAAATGGCCTTTCTGTaGATCTCTCCTATTTATTCCCCAATTCTGGAATATTCTTGTACT | + |
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Preference number: 6 (lower is better) Translates to: FHTSCLLVLIQMAFL*ISPIYSPILEYSCT Trigger: AGTACAAGAATATTCCAGAATTGGGGAATAAATAGGAGAGATCAACAGAAAGGCCATTTGAATCAGAACCAGCAGGCAGGAAGTATGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000562049.1 ENST00000624352.1 ENST00000665248.1 ENST00000667203.1 |
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| CDS GCA 72 bp | ATTTGCTTTTTATCTAACATTGTTTCCGTTGTTTCCTaGCTGCTGGTTCTGATTCAAATGGCCTTTCTGTTG | + |
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Preference number: 6 (lower is better) Translates to: ICFLSNIVSVVS*LLVLIQMAFLL Trigger: CAACAGAAAGGCCATTTGAATCAGAACCAGCAGGCAGGAAACAACGGAAACAATGTTAGATAAAAAGCAAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650887.2 |
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| CDS CAA 72 bp | GATCTCTCCTATTTATTCCCCAATTCTGGAATATTCTaGTACTCCTCAGATCCAGTCGAATTCTTTCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: DLSYLFPNSGIF*YSSDPVEFFLS Trigger: GGAAAGAAAGAATTCGACTGGATCTGAGGAGTACAAGAATATTCCAGAATTGGGGAATAAATAGGAGAGATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000562049.1 ENST00000624352.1 ENST00000650887.2 ENST00000665248.1 ENST00000667203.1 |
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| CDS CAA 72 bp | TGGTACCTTTATGAGGCTGCAATTCATACACTCAATTaGGGAATGGAAGAGTCCTTCAGGAAATATAGAAGT | + |
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Preference number: 6 (lower is better) Translates to: WYLYEAAIHTLN*GMEESFRKYRS Trigger: ACTTCTATATTTCCTGAAGGACTCTTCCATTCCCAAATTGAGTGTATGAATTGCAGCCTCATAAAGGTACCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000562049.1 ENST00000665248.1 |
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| CDS CAA 90 bp | TCCTTTGATCCTATAAAAACTTGTTCATATTGTTTTTCCAACACCTaGTCTTCAATTATGCTGTTGGCTTGCATGGCTTGTATGTCCCAT | + |
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Preference number: 6 (lower is better) Translates to: SFDPIKTCSYCFSNT*SSIMLLACMACMSH Trigger: ATGGGACATACAAGCCATGCAAGCCAACAGCATAATTGAAGACAAGGTGTTGGAAAAACAATATGAACAAGTTTTTATAGGATCAAAGGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 5 transcripts: ENST00000562049.1 ENST00000624352.1 ENST00000650887.2 ENST00000665248.1 ENST00000667203.1 |
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| CDS CAA 90 bp | TTCCTGAGATTATTAGAACTAAGCTTATTTCAGAAGGCTATGAACTaGTATAATTGTCCTTATCCACAAAAGTCTTGCCTGGGTGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: FLRLLELSLFQKAMN*YNCPYPQKSCLGVF Trigger: GAAGACACCCAGGCAAGACTTTTGTGGATAAGGACAATTATACAAGTTCATAGCCTTCTGAAATAAGCTTAGTTCTAATAATCTCAGGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000562049.1 ENST00000665248.1 |
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| CDS CAA 90 bp | TACTTTTCCTTGCACATCAGAATCCAACTGAGAAATGGTTCGTTATaGTTGTGTAGAATAAGAGAAGAGGACACTTCAAAACGACAATTT | + |
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Preference number: 6 (lower is better) Translates to: YFSLHIRIQLRNGSL*LCRIREEDTSKRQF Trigger: AAATTGTCGTTTTGAAGTGTCCTCTTCTCTTATTCTACACAACAATAACGAACCATTTCTCAGTTGGATTCTGATGTGCAAGGAAAAGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS TCA 72 bp | CCTCATTTGTTTCTCCTTCTTAGTGATGTATTAGGCTaGATCACTATTCAAAGACCACTTTCTGATTCAAAC | + |
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Preference number: 6 (lower is better) Translates to: PHLFLLLSDVLG*ITIQRPLSDSN Trigger: GTTTGAATCAGAAAGTGGTCTTTGAATAGTGATTCAGCCTAATACATCACTAAGAAGGAGAAACAAATGAGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000562049.1 |
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| CDS CAA 72 bp | TTGCACATCAGAATCCAACTGAGAAATGGTTCGTTATaGTTGTGTAGAATAAGAGAAGAGGACACTTCAAAA | + |
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Preference number: 6 (lower is better) Translates to: LHIRIQLRNGSL*LCRIREEDTSK Trigger: TTTTGAAGTGTCCTCTTCTCTTATTCTACACAACAATAACGAACCATTTCTCAGTTGGATTCTGATGTGCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CAA 72 bp | GGTCATTGCCATTTATCATATAACATCTACTTTTCCTaGCACATCAGAATCCAACTGAGAAATGGTTCGTTA | + |
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Preference number: 6 (lower is better) Translates to: GHCHLSYNIYFS*HIRIQLRNGSL Trigger: TAACGAACCATTTCTCAGTTGGATTCTGATGTGCAAGGAAAAGTAGATGTTATATGATAAATGGCAATGACC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS TCA 72 bp | GTGAATTGTCTTTGCTGCTTACTTTACGACCCATTTTaGACTCAAATAAGAAAGTCGCTAGAATTTGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: VNCLCCLLYDPF*TQIRKSLEFAF Trigger: AAAAGCAAATTCTAGCGACTTTCTTATTTGAGTTCAAAATGGGTCGTAAAGTAAGCAGCAAAGACAATTCAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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| CDS CAA 72 bp | TGTGAATTGTCTTTGCTGCTTACTTTACGACCCATTTaGAACTCAAATAAGAAAGTCGCTAGAATTTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: CELSLLLTLRPI*NSNKKVARICF Trigger: AAAGCAAATTCTAGCGACTTTCTTATTTGAGTTCAAAATGGGTCGTAAAGTAAGCAGCAAAGACAATTCACA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000650887.2 ENST00000667203.1 |
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