Pregenerated sensors for LINC02601 (Homo sapiens)
Ensembl gene IDs: ENSG00000223714Ensembl transcript IDs: ENST00000452501.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGACAGGATCCCCGGGAGGTTGAAACTCGGGTTCCAGGCGGCCTCTaGTGGCGATCACGGAGGGTGTGCCTCCCGGTCCCGCCCCTCACC | + |
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Preference number: 5 (lower is better) Translates to: GQDPREVETRVPGGL*WRSRRVCLPVPPLT Trigger: GGTGAGGGGCGGGACCGGGAGGCACACCCTCCGTGATCGCCACCAGAGGCCGCCTGGAACCCGAGTTTCAACCTCCCGGGGATCCTGTCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 90 bp | CCTCCTCCCTCACCCCCTCCTCCCTCCGCGGGTTCTGGGCGTCCTTaGAAGGAAAGGAGAGTGGCCTCGAGGTCGGAGAACTCGCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: PPPSPPPPSAGSGRP*KERRVASRSENSQQ Trigger: CTGCTGCGAGTTCTCCGACCTCGAGGCCACTCTCCTTTCCTTCCAAGGACGCCCAGAACCCGCGGAGGGAGGAGGGGGTGAGGGAGGAGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS GCA 90 bp | GGAACCGGAACGTTTGGCCCCAGGAGAGGGGGCCGGGACCCTGGGTaGCAGAATCTTACAGTGCGGAGGCGACAGGCCAACGCAGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: GTGTFGPRRGGRDPG*QNLTVRRRQANAVP Trigger: AGGAACTGCGTTGGCCTGTCGCCTCCGCACTGTAAGATTCTGGCACCCAGGGTCCCGGCCCCCTCTCCTGGGGCCAAACGTTCCGGTTCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 90 bp | CTCCTCTCTCCCTCCTCCCTCACCCCCTCCTCCCTCCGCGGGTTCTaGGCGTCCTTGGAAGGAAAGGAGAGTGGCCTCGAGGTCGGAGAA | + |
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Preference number: 5 (lower is better) Translates to: LLSPSSLTPSSLRGF*ASLEGKESGLEVGE Trigger: TTCTCCGACCTCGAGGCCACTCTCCTTTCCTTCCAAGGACGCCCAGAACCCGCGGAGGGAGGAGGGGGTGAGGGAGGAGGGAGAGAGGAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 90 bp | ATCGGGAACCGGAACGTTTGGCCCCAGGAGAGGGGGCCGGGACCCTaGGTGCCAGAATCTTACAGTGCGGAGGCGACAGGCCAACGCAGT | + |
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Preference number: 5 (lower is better) Translates to: IGNRNVWPQERGPGP*VPESYSAEATGQRS Trigger: ACTGCGTTGGCCTGTCGCCTCCGCACTGTAAGATTCTGGCACCCAGGGTCCCGGCCCCCTCTCCTGGGGCCAAACGTTCCGGTTCCCGAT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS TCA 90 bp | TCATGGCAAACATCGCTGGGAAGCGGGACAGGATCCCCGGGAGGTTaGAACTCGGGTTCCAGGCGGCCTCTGGTGGCGATCACGGAGGGT | + |
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Preference number: 5 (lower is better) Translates to: SWQTSLGSGTGSPGG*NSGSRRPLVAITEG Trigger: ACCCTCCGTGATCGCCACCAGAGGCCGCCTGGAACCCGAGTTTCAACCTCCCGGGGATCCTGTCCCGCTTCCCAGCGATGTTTGCCATGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 90 bp | CTCCTCCCTCCGCGGGTTCTGGGCGTCCTTGGAAGGAAAGGAGAGTaGCCTCGAGGTCGGAGAACTCGCAGCAGTCATGGCAAACATCGC | + |
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Preference number: 5 (lower is better) Translates to: LLPPRVLGVLGRKGE*PRGRRTRSSHGKHR Trigger: GCGATGTTTGCCATGACTGCTGCGAGTTCTCCGACCTCGAGGCCACTCTCCTTTCCTTCCAAGGACGCCCAGAACCCGCGGAGGGAGGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 90 bp | CTTCACTTCAGCGGTGCACGCGGGGCCATCTCCGCTTCCACAGTGTaGTGTTTAAATCCGCAACGATCACAGCCCAGCGGGGGACTCAGC | + |
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Preference number: 5 (lower is better) Translates to: LHFSGARGAISASTV*CLNPQRSQPSGGLS Trigger: GCTGAGTCCCCCGCTGGGCTGTGATCGTTGCGGATTTAAACACCACACTGTGGAAGCGGAGATGGCCCCGCGTGCACCGCTGAAGTGAAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 90 bp | TGGCCTCGAGGTCGGAGAACTCGCAGCAGTCATGGCAAACATCGCTaGGAAGCGGGACAGGATCCCCGGGAGGTTGAAACTCGGGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: WPRGRRTRSSHGKHR*EAGQDPREVETRVP Trigger: TGGAACCCGAGTTTCAACCTCCCGGGGATCCTGTCCCGCTTCCCAGCGATGTTTGCCATGACTGCTGCGAGTTCTCCGACCTCGAGGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 72 bp | CGGGAGGTTGAAACTCGGGTTCCAGGCGGCCTCTGGTaGCGATCACGGAGGGTGTGCCTCCCGGTCCCGCCC | + |
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Preference number: 6 (lower is better) Translates to: REVETRVPGGLW*RSRRVCLPVPP Trigger: GGGCGGGACCGGGAGGCACACCCTCCGTGATCGCCACCAGAGGCCGCCTGGAACCCGAGTTTCAACCTCCCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 72 bp | CCCCGGGAGGTTGAAACTCGGGTTCCAGGCGGCCTCTaGTGGCGATCACGGAGGGTGTGCCTCCCGGTCCCG | + |
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Preference number: 6 (lower is better) Translates to: PREVETRVPGGL*WRSRRVCLPVP Trigger: CGGGACCGGGAGGCACACCCTCCGTGATCGCCACCAGAGGCCGCCTGGAACCCGAGTTTCAACCTCCCGGGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 72 bp | CCCTCCTCCCTCACCCCCTCCTCCCTCCGCGGGTTCTaGGCGTCCTTGGAAGGAAAGGAGAGTGGCCTCGAG | + |
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Preference number: 6 (lower is better) Translates to: PSSLTPSSLRGF*ASLEGKESGLE Trigger: CTCGAGGCCACTCTCCTTTCCTTCCAAGGACGCCCAGAACCCGCGGAGGGAGGAGGGGGTGAGGGAGGAGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 72 bp | CGGAACGTTTGGCCCCAGGAGAGGGGGCCGGGACCCTaGGTGCCAGAATCTTACAGTGCGGAGGCGACAGGC | + |
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Preference number: 6 (lower is better) Translates to: RNVWPQERGPGP*VPESYSAEATG Trigger: GCCTGTCGCCTCCGCACTGTAAGATTCTGGCACCCAGGGTCCCGGCCCCCTCTCCTGGGGCCAAACGTTCCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CAA 90 bp | CCCTCCTCCCTCACCCCCTCCTCCCTCCGCGGGTTCTGGGCGTCCTaGGAAGGAAAGGAGAGTGGCCTCGAGGTCGGAGAACTCGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: PSSLTPSSLRGFWAS*EGKESGLEVGELAA Trigger: TGCTGCGAGTTCTCCGACCTCGAGGCCACTCTCCTTTCCTTCCAAGGACGCCCAGAACCCGCGGAGGGAGGAGGGGGTGAGGGAGGAGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS GCA 72 bp | ACGTTTGGCCCCAGGAGAGGGGGCCGGGACCCTGGGTaGCAGAATCTTACAGTGCGGAGGCGACAGGCCAAC | + |
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Preference number: 6 (lower is better) Translates to: TFGPRRGGRDPG*QNLTVRRRQAN Trigger: GTTGGCCTGTCGCCTCCGCACTGTAAGATTCTGGCACCCAGGGTCCCGGCCCCCTCTCCTGGGGCCAAACGT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 72 bp | TCACCCCCTCCTCCCTCCGCGGGTTCTGGGCGTCCTTaGAAGGAAAGGAGAGTGGCCTCGAGGTCGGAGAAC | + |
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Preference number: 6 (lower is better) Translates to: SPPPPSAGSGRP*KERRVASRSEN Trigger: GTTCTCCGACCTCGAGGCCACTCTCCTTTCCTTCCAAGGACGCCCAGAACCCGCGGAGGGAGGAGGGGGTGA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CAA 90 bp | GTCATGGCAAACATCGCTGGGAAGCGGGACAGGATCCCCGGGAGGTaGAAACTCGGGTTCCAGGCGGCCTCTGGTGGCGATCACGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: VMANIAGKRDRIPGR*KLGFQAASGGDHGG Trigger: CCCTCCGTGATCGCCACCAGAGGCCGCCTGGAACCCGAGTTTCAACCTCCCGGGGATCCTGTCCCGCTTCCCAGCGATGTTTGCCATGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS GCA 72 bp | CCGCATCATTTGCCACGAGCCCCTTCACTTCAGCGGTaGACGCGGGGCCATCTCCGCTTCCACAGTGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: PHHLPRAPSLQR*TRGHLRFHSVV Trigger: CACCACACTGTGGAAGCGGAGATGGCCCCGCGTGCACCGCTGAAGTGAAGGGGCTCGTGGCAAATGATGCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 72 bp | CCGCGGGTTCTGGGCGTCCTTGGAAGGAAAGGAGAGTaGCCTCGAGGTCGGAGAACTCGCAGCAGTCATGGC | + |
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Preference number: 6 (lower is better) Translates to: PRVLGVLGRKGE*PRGRRTRSSHG Trigger: GCCATGACTGCTGCGAGTTCTCCGACCTCGAGGCCACTCTCCTTTCCTTCCAAGGACGCCCAGAACCCGCGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CAA 72 bp | AACATCGCTGGGAAGCGGGACAGGATCCCCGGGAGGTaGAAACTCGGGTTCCAGGCGGCCTCTGGTGGCGAT | + |
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Preference number: 6 (lower is better) Translates to: NIAGKRDRIPGR*KLGFQAASGGD Trigger: ATCGCCACCAGAGGCCGCCTGGAACCCGAGTTTCAACCTCCCGGGGATCCTGTCCCGCTTCCCAGCGATGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS GCA 72 bp | GAGGGGGCCGGGACCCTGGGTGCCAGAATCTTACAGTaGGGAGGCGACAGGCCAACGCAGTTCCTTCCTTTT | + |
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Preference number: 6 (lower is better) Translates to: EGAGTLGARILQ*GGDRPTQFLPF Trigger: AAAAGGAAGGAACTGCGTTGGCCTGTCGCCTCCGCACTGTAAGATTCTGGCACCCAGGGTCCCGGCCCCCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 72 bp | AGCGGTGCACGCGGGGCCATCTCCGCTTCCACAGTGTaGTGTTTAAATCCGCAACGATCACAGCCCAGCGGG | + |
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Preference number: 6 (lower is better) Translates to: SGARGAISASTV*CLNPQRSQPSG Trigger: CCCGCTGGGCTGTGATCGTTGCGGATTTAAACACCACACTGTGGAAGCGGAGATGGCCCCGCGTGCACCGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 72 bp | AGAGTGGCCTCGAGGTCGGAGAACTCGCAGCAGTCATaGCAAACATCGCTGGGAAGCGGGACAGGATCCCCG | + |
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Preference number: 6 (lower is better) Translates to: RVASRSENSQQS*QTSLGSGTGSP Trigger: CGGGGATCCTGTCCCGCTTCCCAGCGATGTTTGCCATGACTGCTGCGAGTTCTCCGACCTCGAGGCCACTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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| CDS CCA 72 bp | GGTCGGAGAACTCGCAGCAGTCATGGCAAACATCGCTaGGAAGCGGGACAGGATCCCCGGGAGGTTGAAACT | + |
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Preference number: 6 (lower is better) Translates to: GRRTRSSHGKHR*EAGQDPREVET Trigger: AGTTTCAACCTCCCGGGGATCCTGTCCCGCTTCCCAGCGATGTTTGCCATGACTGCTGCGAGTTCTCCGACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452501.1 |
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