Pregenerated sensors for LINC02596 (Homo sapiens)
Ensembl gene IDs: ENSG00000233431Ensembl transcript IDs: ENST00000457706.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CATGGGTTGGGCAAGGAGCAGCCGCCTGGCTCCATGTCCAGGTCATaGCGAGGCTGTTCTGGGAAGCGCCCGCTTCCCCTTGGGGCGTCA | + |
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Preference number: 5 (lower is better) Translates to: HGLGKEQPPGSMSRS*RGCSGKRPLPLGAS Trigger: TGACGCCCCAAGGGGAAGCGGGCGCTTCCCAGAACAGCCTCGGCATGACCTGGACATGGAGCCAGGCGGCTGCTCCTTGCCCAACCCATG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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| CDS TCA 90 bp | GCCTCAGTGATTCTAAGCCTCGGTTCCAGTGGCAGGAGGGAGAGGTaGCACTGGAGGACCGAGTCCGGCCCGTCCCCTGCTTGGCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: ASVILSLGSSGRRER*HWRTESGPSPAWLG Trigger: CCCCAGCCAAGCAGGGGACGGGCCGGACTCGGTCCTCCAGTGTCACCTCTCCCTCCTGCCACTGGAACCGAGGCTTAGAATCACTGAGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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| CDS CCA 90 bp | CAGCTATGTTCCCACCGCCTCAGTGATTCTAAGCCTCGGTTCCAGTaGCAGGAGGGAGAGGTGACACTGGAGGACCGAGTCCGGCCCGTC | + |
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Preference number: 5 (lower is better) Translates to: QLCSHRLSDSKPRFQ*QEGEVTLEDRVRPV Trigger: GACGGGCCGGACTCGGTCCTCCAGTGTCACCTCTCCCTCCTGCCACTGGAACCGAGGCTTAGAATCACTGAGGCGGTGGGAACATAGCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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| CDS CCA 90 bp | TTAATCATTGCAAGGCCCCCATGGGTTGGGCAAGGAGCAGCCGCCTaGCTCCATGTCCAGGTCATGCCGAGGCTGTTCTGGGAAGCGCCC | + |
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Preference number: 5 (lower is better) Translates to: LIIARPPWVGQGAAA*LHVQVMPRLFWEAP Trigger: GGGCGCTTCCCAGAACAGCCTCGGCATGACCTGGACATGGAGCCAGGCGGCTGCTCCTTGCCCAACCCATGGGGGCCTTGCAATGATTAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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| CDS TCA 72 bp | ATTCTAAGCCTCGGTTCCAGTGGCAGGAGGGAGAGGTaGCACTGGAGGACCGAGTCCGGCCCGTCCCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: ILSLGSSGRRER*HWRTESGPSPA Trigger: AGCAGGGGACGGGCCGGACTCGGTCCTCCAGTGTCACCTCTCCCTCCTGCCACTGGAACCGAGGCTTAGAAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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| CDS CAA 72 bp | CATGCCGAGGCTGTTCTGGGAAGCGCCCGCTTCCCCTaGGGGCGTCAATCATCTCAGTTCCCAGCCCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: HAEAVLGSARFP*GRQSSQFPALL Trigger: AAGGAGGGCTGGGAACTGAGATGATTGACGCCCCAAGGGGAAGCGGGCGCTTCCCAGAACAGCCTCGGCATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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| CDS CCA 72 bp | CTTAGACTCCAGGAGGAGACACGACGTGGGTGCAGCTaGGAACGGGGAAAACCCAGCCTGAAGTCCAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: LRLQEETRRGCS*ERGKPSLKSSP Trigger: AGGGCTGGACTTCAGGCTGGGTTTTCCCCGTTCCCAGCTGCACCCACGTCGTGTCTCCTCCTGGAGTCTAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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| CDS CCA 72 bp | ATGCCGAGGCTGTTCTGGGAAGCGCCCGCTTCCCCTTaGGGCGTCAATCATCTCAGTTCCCAGCCCTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: MPRLFWEAPASP*GVNHLSSQPSF Trigger: AAAGGAGGGCTGGGAACTGAGATGATTGACGCCCCAAGGGGAAGCGGGCGCTTCCCAGAACAGCCTCGGCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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| CDS CCA 72 bp | GGTTCACACAGACTGCTGAGAAGCCAGAAAAGGCCCTaGCGCTGTGATCAAGGCAGAGTCCCTGCGAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: GSHRLLRSQKRP*RCDQGRVPARL Trigger: GAGCCTCGCAGGGACTCTGCCTTGATCACAGCGCCAGGGCCTTTTCTGGCTTCTCAGCAGTCTGTGTGAACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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| CDS TCA 72 bp | ACAGTCCCTGCCCTCCAGGGCTGGTTGCGGGGAAGATaGGTTAATGTGTGCTGTGAGGCACGTGAGAACAGC | + |
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Preference number: 6 (lower is better) Translates to: TVPALQGWLRGR*VNVCCEARENS Trigger: GCTGTTCTCACGTGCCTCACAGCACACATTAACTCATCTTCCCCGCAACCAGCCCTGGAGGGCAGGGACTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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| CDS TCA 72 bp | AGTCCAGCCCTGCCCGACGCCAGAGGATGCAACGGGTaGTTAAAATCCTGTACTCTGCAGCCACACTGCATG | + |
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Preference number: 6 (lower is better) Translates to: SPALPDARGCNG*LKSCTLQPHCM Trigger: CATGCAGTGTGGCTGCAGAGTACAGGATTTTAATCACCCGTTGCATCCTCTGGCGTCGGGCAGGGCTGGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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| CDS CCA 72 bp | CCTGTACTCTGCAGCCACACTGCATGGCTAGAGTCCTaGCTCCAGCCCTTGTTAGTGGTGTATCTTCCCATA | + |
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Preference number: 6 (lower is better) Translates to: PVLCSHTAWLES*LQPLLVVYLPI Trigger: TATGGGAAGATACACCACTAACAAGGGCTGGAGCCAGGACTCTAGCCATGCAGTGTGGCTGCAGAGTACAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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| CDS CAA 90 bp | GTACTCTGCAGCCACACTGCATGGCTAGAGTCCTGGCTCCAGCCCTaGTTAGTGGTGTATCTTCCCATAAGTTTAAACATTTCTGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: VLCSHTAWLESWLQP*LVVYLPISLNISAS Trigger: AGAAGCAGAAATGTTTAAACTTATGGGAAGATACACCACTAACAAGGGCTGGAGCCAGGACTCTAGCCATGCAGTGTGGCTGCAGAGTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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| CDS CAA 72 bp | AGCCACACTGCATGGCTAGAGTCCTGGCTCCAGCCCTaGTTAGTGGTGTATCTTCCCATAAGTTTAAACATT | + |
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Preference number: 6 (lower is better) Translates to: SHTAWLESWLQP*LVVYLPISLNI Trigger: AATGTTTAAACTTATGGGAAGATACACCACTAACAAGGGCTGGAGCCAGGACTCTAGCCATGCAGTGTGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457706.1 |
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