Pregenerated sensors for LINC02590 (Homo sapiens)
Ensembl gene IDs: ENSG00000233978Ensembl transcript IDs: ENST00000438736.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TTAGAACCCAGATCTGCTTTTCAGCCCAGGCCAGGCCTGCCTTCCTaGGAACAGCAATTCTGCCATGGCCTGGCAGGAGTCAGGGAGGGG | + |
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Preference number: 5 (lower is better) Translates to: LEPRSAFQPRPGLPS*EQQFCHGLAGVREG Trigger: CCCCTCCCTGACTCCTGCCAGGCCATGGCAGAATTGCTGTTCCCAGGAAGGCAGGCCTGGCCTGGGCTGAAAAGCAGATCTGGGTTCTAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438736.1 |
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| CDS GCA 90 bp | AGCCCCATCTCCATTCAGGGGCAAGTCCTGCTGTGGTGCTTAGAGTaGAGCTCTTTCAGGCTTTCCTTTCGCTTAGCCTTGATTTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: SPISIQGQVLLWCLE*SSFRLSFRLALISR Trigger: CCTGGAAATCAAGGCTAAGCGAAAGGAAAGCCTGAAAGAGCTGCACTCTAAGCACCACAGCAGGACTTGCCCCTGAATGGAGATGGGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438736.1 |
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| CDS CCA 72 bp | TCCCAGGCAGCATCGGAGCATCCCCAAATCCAGGGCTaGGAGGAGCCAGGCCATCTTGTCCAAGTAAGGACT | + |
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Preference number: 6 (lower is better) Translates to: SQAASEHPQIQG*EEPGHLVQVRT Trigger: AGTCCTTACTTGGACAAGATGGCCTGGCTCCTCCCAGCCCTGGATTTGGGGATGCTCCGATGCTGCCTGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438736.1 |
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| CDS GCA 72 bp | GCAGGTCCATGCAGAAGGGAGATTAGAACCCAGATCTaGTTTTCAGCCCAGGCCAGGCCTGCCTTCCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: AGPCRREIRTQI*FSAQARPAFLG Trigger: TCCCAGGAAGGCAGGCCTGGCCTGGGCTGAAAAGCAGATCTGGGTTCTAATCTCCCTTCTGCATGGACCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438736.1 |
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| CDS TCA 72 bp | CTTTCCTTTCGCTTAGCCTTGATTTCCAGGCCACCATaGTCAGACTGGGCTCCCAGGCAGCATCGGAGCATC | + |
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Preference number: 6 (lower is better) Translates to: LSFRLALISRPP*SDWAPRQHRSI Trigger: GATGCTCCGATGCTGCCTGGGAGCCCAGTCTGATCATGGTGGCCTGGAAATCAAGGCTAAGCGAAAGGAAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438736.1 |
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| CDS GCA 72 bp | AGCCCCATCTCCATTCAGGGGCAAGTCCTGCTGTGGTaGTTAGAGTGCAGCTCTTTCAGGCTTTCCTTTCGC | + |
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Preference number: 6 (lower is better) Translates to: SPISIQGQVLLW*LECSSFRLSFR Trigger: GCGAAAGGAAAGCCTGAAAGAGCTGCACTCTAAGCACCACAGCAGGACTTGCCCCTGAATGGAGATGGGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438736.1 |
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| CDS CCA 72 bp | CCCAGCCCCATCTCCATTCAGGGGCAAGTCCTGCTGTaGTGCTTAGAGTGCAGCTCTTTCAGGCTTTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: PSPISIQGQVLL*CLECSSFRLSF Trigger: AAAGGAAAGCCTGAAAGAGCTGCACTCTAAGCACCACAGCAGGACTTGCCCCTGAATGGAGATGGGGCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000438736.1 |
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| CDS TCA 72 bp | TGGGAGGAGCCAGGCCATCTTGTCCAAGTAAGGACTTaGAGTTCAGAGAGGAGAAGGCACCAAGCTTGTGTC | + |
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Preference number: 6 (lower is better) Translates to: WEEPGHLVQVRT*SSERRRHQACV Trigger: GACACAAGCTTGGTGCCTTCTCCTCTCTGAACTTCAAGTCCTTACTTGGACAAGATGGCCTGGCTCCTCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438736.1 |
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| CDS CAA 72 bp | CTGGGAGGAGCCAGGCCATCTTGTCCAAGTAAGGACTaGAAGTTCAGAGAGGAGAAGGCACCAAGCTTGTGT | + |
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Preference number: 6 (lower is better) Translates to: LGGARPSCPSKD*KFREEKAPSLC Trigger: ACACAAGCTTGGTGCCTTCTCCTCTCTGAACTTCAAGTCCTTACTTGGACAAGATGGCCTGGCTCCTCCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438736.1 |
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| CDS CAA 72 bp | AAGGACTTGAAGTTCAGAGAGGAGAAGGCACCAAGCTaGTGTCACCCGCAGGTCCATGCAGAAGGGAGATTA | + |
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Preference number: 6 (lower is better) Translates to: KDLKFREEKAPS*CHPQVHAEGRL Trigger: TAATCTCCCTTCTGCATGGACCTGCGGGTGACACAAGCTTGGTGCCTTCTCCTCTCTGAACTTCAAGTCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000438736.1 |
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