Pregenerated sensors for LINC02580 (Homo sapiens)
Ensembl gene IDs: ENSG00000230587Ensembl transcript IDs: ENST00000434020.1, ENST00000654095.1, ENST00000661106.1, ENST00000663868.1, ENST00000670047.1
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GAGTGGCTTCCTGACTGGGGCGCAAAGGAGGAACCACCAGCTCAGTaGACAGGGAGGCCAGGGAGGGCTTCTAGCAGAGGTCACAACCAA | + |
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Preference number: 5 (lower is better) Translates to: EWLPDWGAKEEPPAQ*TGRPGRASSRGHNQ Trigger: TTGGTTGTGACCTCTGCTAGAAGCCCTCCCTGGCCTCCCTGTGCACTGAGCTGGTGGTTCCTCCTTTGCGCCCCAGTCAGGAAGCCACTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS TCA 90 bp | CACATGCACTGTGCCAGCTCTCGGGGGCCCTTCTCATGGGAGTTGTaGACATCCAAACACGAAGCTGGAGGACAAAGTGTAGGGTACACA | + |
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Preference number: 5 (lower is better) Translates to: HMHCASSRGPFSWEL*TSKHEAGGQSVGYT Trigger: TGTGTACCCTACACTTTGTCCTCCAGCTTCGTGTTTGGATGTTCACAACTCCCATGAGAAGGGCCCCCGAGAGCTGGCACAGTGCATGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000434020.1 ENST00000654095.1 ENST00000661106.1 ENST00000663868.1 |
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| CDS CCA 90 bp | CTCCGAGCCCGTCTTACTGAGACATTCTGTCCCTCGGCTATACTCTaGAAAATGTTCCCTCAGCCTAAGACTGCCAGTCCCAAGCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: LRARLTETFCPSAIL*KMFPQPKTASPKQD Trigger: GTCCTGCTTGGGACTGGCAGTCTTAGGCTGAGGGAACATTTTCCAGAGTATAGCCGAGGGACAGAATGTCTCAGTAAGACGGGCTCGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434020.1 ENST00000670047.1 |
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| CDS TCA 90 bp | AAACGAGCACCCGTCTATTCCTCCTCCCAAAGCTGGGAGCAGTTGTaGAGAGCCGCCATAGATTTCCAAAACCTCAGCATCCTGAACGCC | + |
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Preference number: 5 (lower is better) Translates to: KRAPVYSSSQSWEQL*RAAIDFQNLSILNA Trigger: GGCGTTCAGGATGCTGAGGTTTTGGAAATCTATGGCGGCTCTTCACAACTGCTCCCAGCTTTGGGAGGAGGAATAGACGGGTGCTCGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000434020.1 ENST00000661106.1 ENST00000670047.1 |
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| CDS GCA 90 bp | CAGAGAGGGTGCCCAGCCAAGCTCATTTCTGCTGCTACCACGCCATaGAAGACACTGGAAAGCCAACATCACACGACATTCACATCTGTG | + |
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Preference number: 5 (lower is better) Translates to: QRGCPAKLISAATTP*KTLESQHHTTFTSV Trigger: CACAGATGTGAATGTCGTGTGATGTTGGCTTTCCAGTGTCTTGCATGGCGTGGTAGCAGCAGAAATGAGCTTGGCTGGGCACCCTCTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434020.1 ENST00000670047.1 |
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| CDS CCA 90 bp | TCGGGGGCCCTTCTCATGGGAGTTGTGAACATCCAAACACGAAGCTaGAGGACAAAGTGTAGGGTACACAGATCTGAGCATGTACCTGGG | + |
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Preference number: 5 (lower is better) Translates to: SGALLMGVVNIQTRS*RTKCRVHRSEHVPG Trigger: CCCAGGTACATGCTCAGATCTGTGTACCCTACACTTTGTCCTCCAGCTTCGTGTTTGGATGTTCACAACTCCCATGAGAAGGGCCCCCGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000434020.1 ENST00000654095.1 ENST00000661106.1 ENST00000663868.1 |
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| CDS CCA 90 bp | CACAACCAAGCTGAACCTGTCGGCTTGAGGAACATGACAGGAATCTaGGTTGGAAGGCCAACTCAGCCACCCACAAGCTGTGTCATCTTG | + |
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Preference number: 5 (lower is better) Translates to: HNQAEPVGLRNMTGI*VGRPTQPPTSCVIL Trigger: CAAGATGACACAGCTTGTGGGTGGCTGAGTTGGCCTTCCAACCCAGATTCCTGTCATGTTCCTCAAGCCGACAGGTTCAGCTTGGTTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654095.1 ENST00000663868.1 |
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| CDS TCA 90 bp | TCTCACTTTAAATGCAGTCCCTCTACAAGGCAGCCTCAGGGTAGCTaGGTTTCTTTCACAGCAGCTGAAGCCTCCCGACATGAGTGTCCC | + |
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Preference number: 5 (lower is better) Translates to: SHFKCSPSTRQPQGS*VSFTAAEASRHECP Trigger: GGGACACTCATGTCGGGAGGCTTCAGCTGCTGTGAAAGAAACTCAGCTACCCTGAGGCTGCCTTGTAGAGGGACTGCATTTAAAGTGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS GCA 90 bp | AGAGGACCCATGGTACTTTCTGGAGTGATGGAATTGTTCTATATCTaGTCCATCAGAGGCACTGTTGAGTGCAGGCCCAGAGGCCCCACT | + |
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Preference number: 5 (lower is better) Translates to: RGPMVLSGVMELFYI*SIRGTVECRPRGPT Trigger: AGTGGGGCCTCTGGGCCTGCACTCAACAGTGCCTCTGATGGAGCAGATATAGAACAATTCCATCACTCCAGAAAGTACCATGGGTCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS CCA 90 bp | GCCCAGCCAAGCTCATTTCTGCTGCTACCACGCCATGCAAGACACTaGAAAGCCAACATCACACGACATTCACATCTGTGGGTGGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: AQPSSFLLLPRHARH*KANITRHSHLWVEE Trigger: TTCTTCCACCCACAGATGTGAATGTCGTGTGATGTTGGCTTTCCAGTGTCTTGCATGGCGTGGTAGCAGCAGAAATGAGCTTGGCTGGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS CCA 90 bp | CTGGGGTCTAGACTAGGAGGTTCACACTGCTTGGGGCTGGATGGCTaGAACTCCTCAGGAATCTCTCACTTTAAATGCAGTCCCTCTACA | + |
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Preference number: 5 (lower is better) Translates to: LGSRLGGSHCLGLDG*NSSGISHFKCSPST Trigger: TGTAGAGGGACTGCATTTAAAGTGAGAGATTCCTGAGGAGTTCCAGCCATCCAGCCCCAAGCAGTGTGAACCTCCTAGTCTAGACCCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS GCA 90 bp | AAACAATTATGTGCCAGGTTTGTAGAAGTCTGGAGAGGAAACACATaGACTGTGCCAGCTCTCGGGGGCCCTTCTCATGGGAGTTGTGAA | + |
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Preference number: 5 (lower is better) Translates to: KQLCARFVEVWRGNT*TVPALGGPSHGSCE Trigger: TTCACAACTCCCATGAGAAGGGCCCCCGAGAGCTGGCACAGTGCATGTGTTTCCTCTCCAGACTTCTACAAACCTGGCACATAATTGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000434020.1 ENST00000654095.1 ENST00000661106.1 ENST00000663868.1 |
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| CDS CCA 90 bp | ATGCCATCTTTCAGCAAACAATTATGTGCCAGGTTTGTAGAAGTCTaGAGAGGAAACACATGCACTGTGCCAGCTCTCGGGGGCCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: MPSFSKQLCARFVEV*RGNTCTVPALGGPS Trigger: AGAAGGGCCCCCGAGAGCTGGCACAGTGCATGTGTTTCCTCTCCAGACTTCTACAAACCTGGCACATAATTGTTTGCTGAAAGATGGCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000434020.1 ENST00000654095.1 ENST00000661106.1 ENST00000663868.1 |
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| CDS CCA 90 bp | GAGCAGTGGGGTGGAGAAACTGGAAAGAGGACCCATGGTACTTTCTaGAGTGATGGAATTGTTCTATATCTGCTCCATCAGAGGCACTGT | + |
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Preference number: 5 (lower is better) Translates to: EQWGGETGKRTHGTF*SDGIVLYLLHQRHC Trigger: ACAGTGCCTCTGATGGAGCAGATATAGAACAATTCCATCACTCCAGAAAGTACCATGGGTCCTCTTTCCAGTTTCTCCACCCCACTGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS TCA 90 bp | GTGGGGTGGAGAAACTGGAAAGAGGACCCATGGTACTTTCTGGAGTaGTGGAATTGTTCTATATCTGCTCCATCAGAGGCACTGTTGAGT | + |
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Preference number: 5 (lower is better) Translates to: VGWRNWKEDPWYFLE*WNCSISAPSEALLS Trigger: ACTCAACAGTGCCTCTGATGGAGCAGATATAGAACAATTCCATCACTCCAGAAAGTACCATGGGTCCTCTTTCCAGTTTCTCCACCCCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS GCA 90 bp | ATCCCATTAAAGGGAAAGATCATCTCTTGTTCTTTTTGTCTCTCTTaGTCAAGGCCTGTCCCAGAGGAAGTGAGAGCAGGGAGTGGGAAG | + |
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Preference number: 5 (lower is better) Translates to: IPLKGKIISCSFCLS*SRPVPEEVRAGSGK Trigger: CTTCCCACTCCCTGCTCTCACTTCCTCTGGGACAGGCCTTGAGCAAGAGAGACAAAAAGAACAAGAGATGATCTTTCCCTTTAATGGGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000661106.1 ENST00000663868.1 |
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| CDS GCA 90 bp | ATCCCTGCCCCAAACCCTTCTCTCTCCCACTCACACAGATATGAGTaGCATCCTAAAGTCAGTGGCATCATTTCTAAGAGAGATTTTGGT | + |
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Preference number: 5 (lower is better) Translates to: IPAPNPSLSHSHRYE*HPKVSGIISKRDFG Trigger: ACCAAAATCTCTCTTAGAAATGATGCCACTGACTTTAGGATGGCACTCATATCTGTGTGAGTGGGAGAGAGAAGGGTTTGGGGCAGGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000661106.1 ENST00000663868.1 |
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| CDS CCA 90 bp | AGCACTGTTTTAAGGTTCATCCACATTGTTGGGTGTACATCTAGTTaGTTCTGCATTCGTCTCATTGTGTTATACTTATCCCATTCTTAT | + |
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Preference number: 5 (lower is better) Translates to: STVLRFIHIVGCTSS*FCIRLIVLYLSHSY Trigger: ATAAGAATGGGATAAGTATAACACAATGAGACGAATGCAGAACCAACTAGATGTACACCCAACAATGTGGATGAACCTTAAAACAGTGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661106.1 ENST00000663868.1 |
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| CDS GCA 90 bp | GTTTTAAGGTTCATCCACATTGTTGGGTGTACATCTAGTTGGTTCTaGATTCGTCTCATTGTGTTATACTTATCCCATTCTTATTCCATT | + |
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Preference number: 5 (lower is better) Translates to: VLRFIHIVGCTSSWF*IRLIVLYLSHSYSI Trigger: AATGGAATAAGAATGGGATAAGTATAACACAATGAGACGAATGCAGAACCAACTAGATGTACACCCAACAATGTGGATGAACCTTAAAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661106.1 ENST00000663868.1 |
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| CDS GCA 72 bp | CCTGACTGGGGCGCAAAGGAGGAACCACCAGCTCAGTaGACAGGGAGGCCAGGGAGGGCTTCTAGCAGAGGT | + |
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Preference number: 6 (lower is better) Translates to: PDWGAKEEPPAQ*TGRPGRASSRG Trigger: ACCTCTGCTAGAAGCCCTCCCTGGCCTCCCTGTGCACTGAGCTGGTGGTTCCTCCTTTGCGCCCCAGTCAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS CAA 90 bp | CCGGGAGAGGCCCAGGTCCCAGGTCGGCAGTGCTGGTCTTCACCTTaGCCACTGAACCCGAGGAAACGAGCACCCGTCTATTCCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: PGEAQVPGRQCWSSP*PLNPRKRAPVYSSS Trigger: GGAGGAGGAATAGACGGGTGCTCGTTTCCTCGGGTTCAGTGGCAAAGGTGAAGACCAGCACTGCCGACCTGGGACCTGGGCCTCTCCCGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000434020.1 ENST00000661106.1 ENST00000670047.1 |
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| CDS GCA 72 bp | CTGTTGAGTGCAGGCCCAGAGGCCCCACTGGTTTTATaGCAGGGTTGGTGCCCAGAAGAGCTCCAGCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: LLSAGPEAPLVL*QGWCPEELQPG Trigger: CCCTGGCTGGAGCTCTTCTGGGCACCAACCCTGGCATAAAACCAGTGGGGCCTCTGGGCCTGCACTCAACAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000434020.1 ENST00000661106.1 ENST00000670047.1 |
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| CDS GCA 72 bp | TGTACCTGGGGCGCAAAGGAGGAACCACCAGCTCAGTaGACAGGGAGGCCAGGGAGGGCTTCTAGCAGAGGT | + |
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Preference number: 6 (lower is better) Translates to: CTWGAKEEPPAQ*TGRPGRASSRG Trigger: ACCTCTGCTAGAAGCCCTCCCTGGCCTCCCTGTGCACTGAGCTGGTGGTTCCTCCTTTGCGCCCCAGGTACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000434020.1 ENST00000654095.1 ENST00000661106.1 ENST00000663868.1 |
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| CDS CCA 72 bp | GCAGGCCCAGAGGCCCCACTGGTTTTATGCCAGGGTTaGTGCCCAGAAGAGCTCCAGCCAGGGCTTACTGGA | + |
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Preference number: 6 (lower is better) Translates to: AGPEAPLVLCQG*CPEELQPGLTG Trigger: TCCAGTAAGCCCTGGCTGGAGCTCTTCTGGGCACCAACCCTGGCATAAAACCAGTGGGGCCTCTGGGCCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000434020.1 ENST00000661106.1 ENST00000670047.1 |
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| CDS CAA 72 bp | TGCAGGCCCAGAGGCCCCACTGGTTTTATGCCAGGGTaGGTGCCCAGAAGAGCTCCAGCCAGGGCTTACTGG | + |
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Preference number: 6 (lower is better) Translates to: CRPRGPTGFMPG*VPRRAPARAYW Trigger: CCAGTAAGCCCTGGCTGGAGCTCTTCTGGGCACCAACCCTGGCATAAAACCAGTGGGGCCTCTGGGCCTGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000434020.1 ENST00000661106.1 ENST00000670047.1 |
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| CDS CAA 90 bp | AGCAGAGGTCACAACCAAGCTGAACCTGCTCCATCAGAGGCACTGTaGAGTGCAGGCCCAGAGGCCCCACTGGTTTTATGCCAGGGTTGG | + |
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Preference number: 6 (lower is better) Translates to: SRGHNQAEPAPSEAL*SAGPEAPLVLCQGW Trigger: CCAACCCTGGCATAAAACCAGTGGGGCCTCTGGGCCTGCACTCAACAGTGCCTCTGATGGAGCAGGTTCAGCTTGGTTGTGACCTCTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000434020.1 ENST00000661106.1 |
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| CDS GCA 72 bp | GGCCCAGAGAGGGTGCCCAGCCAAGCTCATTTCTGCTaGTACCACGCCATGCAAGACACTGGAAAGCCAACA | + |
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Preference number: 6 (lower is better) Translates to: GPERVPSQAHFC*YHAMQDTGKPT Trigger: TGTTGGCTTTCCAGTGTCTTGCATGGCGTGGTAGCAGCAGAAATGAGCTTGGCTGGGCACCCTCTCTGGGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434020.1 ENST00000670047.1 |
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| CDS CCA 72 bp | GCTGAACCTGTCGGCTTGAGGAACATGACAGGAATCTaGGTTGGAAGGCCAACTCAGCCACCCACAAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: AEPVGLRNMTGI*VGRPTQPPTSC Trigger: ACAGCTTGTGGGTGGCTGAGTTGGCCTTCCAACCCAGATTCCTGTCATGTTCCTCAAGCCGACAGGTTCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654095.1 ENST00000663868.1 |
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| CDS TCA 72 bp | TGTGCCAGCTCTCGGGGGCCCTTCTCATGGGAGTTGTaGACATCCAAACACGAAGCTGGAGGACAAAGTGTA | + |
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Preference number: 6 (lower is better) Translates to: CASSRGPFSWEL*TSKHEAGGQSV Trigger: TACACTTTGTCCTCCAGCTTCGTGTTTGGATGTTCACAACTCCCATGAGAAGGGCCCCCGAGAGCTGGCACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000434020.1 ENST00000654095.1 ENST00000661106.1 ENST00000663868.1 |
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| CDS GCA 72 bp | TTGTTCTATATCTGCTCCATCAGAGGCACTGTTGAGTaGAGGCCCAGAGGCCCCACTGGTTTTATGCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: LFYICSIRGTVE*RPRGPTGFMPG Trigger: CCCTGGCATAAAACCAGTGGGGCCTCTGGGCCTGCACTCAACAGTGCCTCTGATGGAGCAGATATAGAACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS CCA 72 bp | ACCTGTCGGCTTGAGGAACATGACAGGAATCTGGGTTaGAAGGCCAACTCAGCCACCCACAAGCTGTGTCAT | + |
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Preference number: 6 (lower is better) Translates to: TCRLEEHDRNLG*KANSATHKLCH Trigger: ATGACACAGCTTGTGGGTGGCTGAGTTGGCCTTCCAACCCAGATTCCTGTCATGTTCCTCAAGCCGACAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654095.1 ENST00000663868.1 |
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| CDS CCA 72 bp | CACATGTACACACACACACACACGTATCCCTTCAGCTaGGGACCCGGGAAGGTTGGGGTGGGAGAAAGAAAT | + |
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Preference number: 6 (lower is better) Translates to: HMYTHTHTYPFS*GPGKVGVGERN Trigger: ATTTCTTTCTCCCACCCCAACCTTCCCGGGTCCCCAGCTGAAGGGATACGTGTGTGTGTGTGTGTACATGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661106.1 ENST00000663868.1 |
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| CDS CCA 72 bp | GTAGTAGGACTCATATTACCTTCTTCTGGGGTGGAGTaGCTTCCTGACTGGGGCGCAAAGGAGGAACCACCA | + |
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Preference number: 6 (lower is better) Translates to: VVGLILPSSGVE*LPDWGAKEEPP Trigger: TGGTGGTTCCTCCTTTGCGCCCCAGTCAGGAAGCCACTCCACCCCAGAAGAAGGTAATATGAGTCCTACTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS CCA 72 bp | TCACTCAGGGTGTCTCATGAGTTTGCAGTCAATTGGTaGCTGGGGCTGAGGTCAGCTCAAATGCTGGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: SLRVSHEFAVNW*LGLRSAQMLGS Trigger: AGACCCCAGCATTTGAGCTGACCTCAGCCCCAGCCACCAATTGACTGCAAACTCATGAGACACCCTGAGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS CAA 72 bp | CAAATGCTGGGGTCTAGACTAGGAGGTTCACACTGCTaGGGGCTGGATGGCTGGAACTCCTCAGGAATCTCT | + |
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Preference number: 6 (lower is better) Translates to: QMLGSRLGGSHC*GLDGWNSSGIS Trigger: AGAGATTCCTGAGGAGTTCCAGCCATCCAGCCCCAAGCAGTGTGAACCTCCTAGTCTAGACCCCAGCATTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS TCA 72 bp | AAATGCAGTCCCTCTACAAGGCAGCCTCAGGGTAGCTaGGTTTCTTTCACAGCAGCTGAAGCCTCCCGACAT | + |
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Preference number: 6 (lower is better) Translates to: KCSPSTRQPQGS*VSFTAAEASRH Trigger: ATGTCGGGAGGCTTCAGCTGCTGTGAAAGAAACTCAGCTACCCTGAGGCTGCCTTGTAGAGGGACTGCATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS GCA 72 bp | TGCCCAGCCAAGCTCATTTCTGCTGCTACCACGCCATaGAAGACACTGGAAAGCCAACATCACACGACATTC | + |
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Preference number: 6 (lower is better) Translates to: CPAKLISAATTP*KTLESQHHTTF Trigger: GAATGTCGTGTGATGTTGGCTTTCCAGTGTCTTGCATGGCGTGGTAGCAGCAGAAATGAGCTTGGCTGGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434020.1 ENST00000670047.1 |
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| CDS CAA 72 bp | TCTAGCAGAGGTCACAACCAAGCTGAACCTGTCGGCTaGAGGAACATGACAGGAATCTGGGTTGGAAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: SSRGHNQAEPVG*RNMTGIWVGRP Trigger: TGGCCTTCCAACCCAGATTCCTGTCATGTTCCTCAAGCCGACAGGTTCAGCTTGGTTGTGACCTCTGCTAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654095.1 ENST00000663868.1 |
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| CDS CCA 72 bp | CGTCTTACTGAGACATTCTGTCCCTCGGCTATACTCTaGAAAATGTTCCCTCAGCCTAAGACTGCCAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: RLTETFCPSAIL*KMFPQPKTASP Trigger: GGGACTGGCAGTCTTAGGCTGAGGGAACATTTTCCAGAGTATAGCCGAGGGACAGAATGTCTCAGTAAGACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434020.1 ENST00000670047.1 |
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| CDS CAA 72 bp | AGAGAGGGGCAAACTGAGGAGATGATGGGCCTGTCCTaGAGACTCCATCCTAGGAGAGAGATACTAATACCC | + |
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Preference number: 6 (lower is better) Translates to: REGQTEEMMGLS*RLHPRREILIP Trigger: GGGTATTAGTATCTCTCTCCTAGGATGGAGTCTCAAGGACAGGCCCATCATCTCCTCAGTTTGCCCCTCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000661106.1 ENST00000663868.1 |
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| CDS CCA 72 bp | AGCTCATTTCTGCTGCTACCACGCCATGCAAGACACTaGAAAGCCAACATCACACGACATTCACATCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: SSFLLLPRHARH*KANITRHSHLW Trigger: CCACAGATGTGAATGTCGTGTGATGTTGGCTTTCCAGTGTCTTGCATGGCGTGGTAGCAGCAGAAATGAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434020.1 ENST00000670047.1 |
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| CDS CCA 72 bp | AGACTAGGAGGTTCACACTGCTTGGGGCTGGATGGCTaGAACTCCTCAGGAATCTCTCACTTTAAATGCAGT | + |
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Preference number: 6 (lower is better) Translates to: RLGGSHCLGLDG*NSSGISHFKCS Trigger: ACTGCATTTAAAGTGAGAGATTCCTGAGGAGTTCCAGCCATCCAGCCCCAAGCAGTGTGAACCTCCTAGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS CCA 72 bp | CTTCTCATGGGAGTTGTGAACATCCAAACACGAAGCTaGAGGACAAAGTGTAGGGTACACAGATCTGAGCAT | + |
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Preference number: 6 (lower is better) Translates to: LLMGVVNIQTRS*RTKCRVHRSEH Trigger: ATGCTCAGATCTGTGTACCCTACACTTTGTCCTCCAGCTTCGTGTTTGGATGTTCACAACTCCCATGAGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000434020.1 ENST00000654095.1 ENST00000661106.1 ENST00000663868.1 |
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| CDS CCA 72 bp | TTGACCACCCTGTTCCATGCAGGTCTCTCCCTCTTCTaGGGATGGCAAATGTCATTTAATCATACACTAGTC | + |
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Preference number: 6 (lower is better) Translates to: LTTLFHAGLSLF*GWQMSFNHTLV Trigger: GACTAGTGTATGATTAAATGACATTTGCCATCCCCAGAAGAGGGAGAGACCTGCATGGAACAGGGTGGTCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661106.1 ENST00000663868.1 |
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| CDS TCA 72 bp | AATCCTCATTCACCAGCCCAGTCCCCCATCCATAAATaGGGCAACCACATTAGTGTGTTTGACATCACATCT | + |
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Preference number: 6 (lower is better) Translates to: NPHSPAQSPIHK*GNHISVFDITS Trigger: AGATGTGATGTCAAACACACTAATGTGGTTGCCTCATTTATGGATGGGGGACTGGGCTGGTGAATGAGGATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000661106.1 ENST00000663868.1 |
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| CDS CCA 72 bp | GGTGGAGAAACTGGAAAGAGGACCCATGGTACTTTCTaGAGTGATGGAATTGTTCTATATCTGCTCCATCAG | + |
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Preference number: 6 (lower is better) Translates to: GGETGKRTHGTF*SDGIVLYLLHQ Trigger: CTGATGGAGCAGATATAGAACAATTCCATCACTCCAGAAAGTACCATGGGTCCTCTTTCCAGTTTCTCCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670047.1 |
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| CDS CAA 90 bp | CAGCCCAGTCCCCCATCCATAAATGAGGCAACCACATTAGTGTGTTaGACATCACATCTTTGTCTGTGTCTCTACAAAACATACGTTGCT | + |
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Preference number: 6 (lower is better) Translates to: QPSPPSINEATTLVC*TSHLCLCLYKTYVA Trigger: AGCAACGTATGTTTTGTAGAGACACAGACAAAGATGTGATGTCAAACACACTAATGTGGTTGCCTCATTTATGGATGGGGGACTGGGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000661106.1 ENST00000663868.1 |
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| CDS GCA 72 bp | TTCATCCACATTGTTGGGTGTACATCTAGTTGGTTCTaGATTCGTCTCATTGTGTTATACTTATCCCATTCT | + |
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Preference number: 6 (lower is better) Translates to: FIHIVGCTSSWF*IRLIVLYLSHS Trigger: AGAATGGGATAAGTATAACACAATGAGACGAATGCAGAACCAACTAGATGTACACCCAACAATGTGGATGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661106.1 ENST00000663868.1 |
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| CDS CCA 72 bp | TTAAGGTTCATCCACATTGTTGGGTGTACATCTAGTTaGTTCTGCATTCGTCTCATTGTGTTATACTTATCC | + |
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Preference number: 6 (lower is better) Translates to: LRFIHIVGCTSS*FCIRLIVLYLS Trigger: GGATAAGTATAACACAATGAGACGAATGCAGAACCAACTAGATGTACACCCAACAATGTGGATGAACCTTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661106.1 ENST00000663868.1 |
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| CDS CAA 90 bp | TTTTTAGTTTATATGAATGATGTGCTGCAGATTTCATTCTGTTTCTaGCCTTCTTCAGGCAGCACTGTTTTAAGGTTCATCCACATTGTT | + |
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Preference number: 6 (lower is better) Translates to: FLVYMNDVLQISFCF*PSSGSTVLRFIHIV Trigger: AACAATGTGGATGAACCTTAAAACAGTGCTGCCTGAAGAAGGCAAGAAACAGAATGAAATCTGCAGCACATCATTCATATAAACTAAAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000661106.1 ENST00000663868.1 |
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