Pregenerated sensors for LINC02578 (Homo sapiens)
Ensembl gene IDs: ENSG00000235201Ensembl transcript IDs: ENST00000456032.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ACAGCATACCTCAGTTTCCTCGACGGCACAATGCCAAAGGATCTTTaGAGTTGGTCCTGGCTCCAGCATCACACGTTCAGAATTCCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: TAYLSFLDGTMPKDL*SWSWLQHHTFRIPS Trigger: GCTTGGAATTCTGAACGTGTGATGCTGGAGCCAGGACCAACTGCAAAGATCCTTTGGCATTGTGCCGTCGAGGAAACTGAGGTATGCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456032.1 |
||
| CDS GCA 90 bp | AAATTTACCTCAGAACAGCATACCTCAGTTTCCTCGACGGCACAATaGCAAAGGATCTTTGCAGTTGGTCCTGGCTCCAGCATCACACGT | + |
|
Preference number: 5 (lower is better) Translates to: KFTSEQHTSVSSTAQ*QRIFAVGPGSSITR Trigger: ACGTGTGATGCTGGAGCCAGGACCAACTGCAAAGATCCTTTGGCATTGTGCCGTCGAGGAAACTGAGGTATGCTGTTCTGAGGTAAATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456032.1 |
||
| CDS TCA 90 bp | AAGGAAGTTAGAGACAGAGAAAAAGGGATTGTAAAGACATATTATTaGGTTGACCCTCACTGCAGACAGCTGGTGCACAATCCCACCAGG | + |
|
Preference number: 5 (lower is better) Translates to: KEVRDREKGIVKTYY*VDPHCRQLVHNPTR Trigger: CCTGGTGGGATTGTGCACCAGCTGTCTGCAGTGAGGGTCAACTCAATAATATGTCTTTACAATCCCTTTTTCTCTGTCTCTAACTTCCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000456032.1 |
||
| CDS CAA 72 bp | CCTCAGTTTCCTCGACGGCACAATGCCAAAGGATCTTaGCAGTTGGTCCTGGCTCCAGCATCACACGTTCAG | + |
|
Preference number: 6 (lower is better) Translates to: PQFPRRHNAKGS*QLVLAPASHVQ Trigger: CTGAACGTGTGATGCTGGAGCCAGGACCAACTGCAAAGATCCTTTGGCATTGTGCCGTCGAGGAAACTGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456032.1 |
||
| CDS GCA 72 bp | TCAGAACAGCATACCTCAGTTTCCTCGACGGCACAATaGCAAAGGATCTTTGCAGTTGGTCCTGGCTCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: SEQHTSVSSTAQ*QRIFAVGPGSS Trigger: GCTGGAGCCAGGACCAACTGCAAAGATCCTTTGGCATTGTGCCGTCGAGGAAACTGAGGTATGCTGTTCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456032.1 |
||
| CDS CCA 72 bp | GACGGCACAATGCCAAAGGATCTTTGCAGTTGGTCCTaGCTCCAGCATCACACGTTCAGAATTCCAAGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: DGTMPKDLCSWS*LQHHTFRIPSC Trigger: ACAGCTTGGAATTCTGAACGTGTGATGCTGGAGCCAGGACCAACTGCAAAGATCCTTTGGCATTGTGCCGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456032.1 |
||
| CDS CCA 72 bp | TTCCTCGACGGCACAATGCCAAAGGATCTTTGCAGTTaGTCCTGGCTCCAGCATCACACGTTCAGAATTCCA | + |
|
Preference number: 6 (lower is better) Translates to: FLDGTMPKDLCS*SWLQHHTFRIP Trigger: TGGAATTCTGAACGTGTGATGCTGGAGCCAGGACCAACTGCAAAGATCCTTTGGCATTGTGCCGTCGAGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456032.1 |
||
| CDS CAA 72 bp | TTTCCTCGACGGCACAATGCCAAAGGATCTTTGCAGTaGGTCCTGGCTCCAGCATCACACGTTCAGAATTCC | + |
|
Preference number: 6 (lower is better) Translates to: FPRRHNAKGSLQ*VLAPASHVQNS Trigger: GGAATTCTGAACGTGTGATGCTGGAGCCAGGACCAACTGCAAAGATCCTTTGGCATTGTGCCGTCGAGGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456032.1 |
||
| CDS CAA 90 bp | AACAGCATACCTCAGTTTCCTCGACGGCACAATGCCAAAGGATCTTaGCAGTTGGTCCTGGCTCCAGCATCACACGTTCAGAATTCCAAG | + |
|
Preference number: 6 (lower is better) Translates to: NSIPQFPRRHNAKGS*QLVLAPASHVQNSK Trigger: CTTGGAATTCTGAACGTGTGATGCTGGAGCCAGGACCAACTGCAAAGATCCTTTGGCATTGTGCCGTCGAGGAAACTGAGGTATGCTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456032.1 |
||
| CDS CAA 90 bp | ATACCTCAGTTTCCTCGACGGCACAATGCCAAAGGATCTTTGCAGTaGGTCCTGGCTCCAGCATCACACGTTCAGAATTCCAAGCTGTAT | + |
|
Preference number: 6 (lower is better) Translates to: IPQFPRRHNAKGSLQ*VLAPASHVQNSKLY Trigger: ATACAGCTTGGAATTCTGAACGTGTGATGCTGGAGCCAGGACCAACTGCAAAGATCCTTTGGCATTGTGCCGTCGAGGAAACTGAGGTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456032.1 |
||
| CDS GCA 72 bp | CATATTATTGAGTTGACCCTCACTGCAGACAGCTGGTaGACAATCCCACCAGGACTTCTGAAGAGGCATATA | + |
|
Preference number: 6 (lower is better) Translates to: HIIELTLTADSW*TIPPGLLKRHI Trigger: TATATGCCTCTTCAGAAGTCCTGGTGGGATTGTGCACCAGCTGTCTGCAGTGAGGGTCAACTCAATAATATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456032.1 |
||
| CDS TCA 72 bp | CAGAGAAAAAGGGATTGTAAAGACATATTATTGAGTTaGCCCTCACTGCAGACAGCTGGTGCACAATCCCAC | + |
|
Preference number: 6 (lower is better) Translates to: QRKRDCKDILLS*PSLQTAGAQSH Trigger: GTGGGATTGTGCACCAGCTGTCTGCAGTGAGGGTCAACTCAATAATATGTCTTTACAATCCCTTTTTCTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000456032.1 |
||
| CDS TCA 72 bp | AGAGACAGAGAAAAAGGGATTGTAAAGACATATTATTaGGTTGACCCTCACTGCAGACAGCTGGTGCACAAT | + |
|
Preference number: 6 (lower is better) Translates to: RDREKGIVKTYY*VDPHCRQLVHN Trigger: ATTGTGCACCAGCTGTCTGCAGTGAGGGTCAACTCAATAATATGTCTTTACAATCCCTTTTTCTCTGTCTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000456032.1 |
||