Pregenerated sensors for LINC02575 (Homo sapiens)
Ensembl gene IDs: ENSG00000228709Ensembl transcript IDs: ENST00000449713.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGACTGCCCCGGCCAAACTCCGCCTGGTCCTGCCGCTCGGTGGCCTaGCGGCGTCTGTGGTGTGCTCTTCCGCCGGCATGCTCCCTTGAC | + |
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Preference number: 5 (lower is better) Translates to: RLPRPNSAWSCRSVA*RRLWCALPPACSLD Trigger: GTCAAGGGAGCATGCCGGCGGAAGAGCACACCACAGACGCCGGCAGGCCACCGAGCGGCAGGACCAGGCGGAGTTTGGCCGGGGCAGTCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CCA 90 bp | CCAAACTCCGCCTGGTCCTGCCGCTCGGTGGCCTGCCGGCGTCTGTaGTGTGCTCTTCCGCCGGCATGCTCCCTTGACGTCCTCTCCACG | + |
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Preference number: 5 (lower is better) Translates to: PNSAWSCRSVACRRL*CALPPACSLDVLST Trigger: CGTGGAGAGGACGTCAAGGGAGCATGCCGGCGGAAGAGCACACCACAGACGCCGGCAGGCCACCGAGCGGCAGGACCAGGCGGAGTTTGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS GCA 90 bp | TGTCCCCCTCGCAGTGTGCGATGGGAGTGTGGCTCACTTCTTCAGTaGCCCGCAGCTCAAACCTCTAGGGGAGCATACACTCAGGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: CPPRSVRWECGSLLQ*PAAQTSRGAYTQAG Trigger: GCCTGCCTGAGTGTATGCTCCCCTAGAGGTTTGAGCTGCGGGGCACTGAAGAAGTGAGCCACACTCCCATCGCACACTGCGAGGGGGACA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS TCA 90 bp | GAATCGGATCACACGGGGGCTTGGAGAACGAGTGCAAAGTGTTATTaGGTGGAAGCAGCTCTCAGCCGACGGAGGAGCCACAAGGGAGAT | + |
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Preference number: 5 (lower is better) Translates to: ESDHTGAWRTSAKCY*VEAALSRRRSHKGD Trigger: ATCTCCCTTGTGGCTCCTCCGTCGGCTGAGAGCTGCTTCCACTCAATAACACTTTGCACTCGTTCTCCAAGCCCCCGTGTGATCCGATTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CCA 90 bp | ACTTGTGGAAAGGACCGAGGCCTTTCTGTATCCTGGGTTCTTGCCTaGGTGTACCAGAAGAATCGGATCACACGGGGGCTTGGAGAACGA | + |
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Preference number: 5 (lower is better) Translates to: TCGKDRGLSVSWVLA*VYQKNRITRGLGER Trigger: TCGTTCTCCAAGCCCCCGTGTGATCCGATTCTTCTGGTACACCCAGGCAAGAACCCAGGATACAGAAAGGCCTCGGTCCTTTCCACAAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CCA 90 bp | TCAAGTAGAGGTACTTGTGGAAAGGACCGAGGCCTTTCTGTATCCTaGGTTCTTGCCTGGGTGTACCAGAAGAATCGGATCACACGGGGG | + |
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Preference number: 5 (lower is better) Translates to: SSRGTCGKDRGLSVS*VLAWVYQKNRITRG Trigger: CCCCCGTGTGATCCGATTCTTCTGGTACACCCAGGCAAGAACCCAGGATACAGAAAGGCCTCGGTCCTTTCCACAAGTACCTCTACTTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CCA 72 bp | CTAGCTCTCCTCCGACTGCCCCGGCCAAACTCCGCCTaGTCCTGCCGCTCGGTGGCCTGCCGGCGTCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: LALLRLPRPNSA*SCRSVACRRLW Trigger: CCACAGACGCCGGCAGGCCACCGAGCGGCAGGACCAGGCGGAGTTTGGCCGGGGCAGTCGGAGGAGAGCTAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CCA 72 bp | GCCTGGTCCTGCCGCTCGGTGGCCTGCCGGCGTCTGTaGTGTGCTCTTCCGCCGGCATGCTCCCTTGACGTC | + |
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Preference number: 6 (lower is better) Translates to: AWSCRSVACRRL*CALPPACSLDV Trigger: GACGTCAAGGGAGCATGCCGGCGGAAGAGCACACCACAGACGCCGGCAGGCCACCGAGCGGCAGGACCAGGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CCA 72 bp | GTTCCTTTGTCCCCCTCGCAGTGTGCGATGGGAGTGTaGCTCACTTCTTCAGTGCCCCGCAGCTCAAACCTC | + |
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Preference number: 6 (lower is better) Translates to: VPLSPSQCAMGV*LTSSVPRSSNL Trigger: GAGGTTTGAGCTGCGGGGCACTGAAGAAGTGAGCCACACTCCCATCGCACACTGCGAGGGGGACAAAGGAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS TCA 72 bp | CACACGGGGGCTTGGAGAACGAGTGCAAAGTGTTATTaGGTGGAAGCAGCTCTCAGCCGACGGAGGAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: HTGAWRTSAKCY*VEAALSRRRSH Trigger: GTGGCTCCTCCGTCGGCTGAGAGCTGCTTCCACTCAATAACACTTTGCACTCGTTCTCCAAGCCCCCGTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CAA 72 bp | GCATGCTCCCTTGACGTCCTCTCCACGTCCAGCCGCTaGTTTTCTTCCACTGATGCGTTCCTCTCAGCATCC | + |
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Preference number: 6 (lower is better) Translates to: ACSLDVLSTSSR*FSSTDAFLSAS Trigger: GGATGCTGAGAGGAACGCATCAGTGGAAGAAAACAAGCGGCTGGACGTGGAGAGGACGTCAAGGGAGCATGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CAA 90 bp | GAGGTACTTGTGGAAAGGACCGAGGCCTTTCTGTATCCTGGGTTCTaGCCTGGGTGTACCAGAAGAATCGGATCACACGGGGGCTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: EVLVERTEAFLYPGF*PGCTRRIGSHGGLE Trigger: CTCCAAGCCCCCGTGTGATCCGATTCTTCTGGTACACCCAGGCAAGAACCCAGGATACAGAAAGGCCTCGGTCCTTTCCACAAGTACCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CCA 72 bp | AAGGACCGAGGCCTTTCTGTATCCTGGGTTCTTGCCTaGGTGTACCAGAAGAATCGGATCACACGGGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: KDRGLSVSWVLA*VYQKNRITRGL Trigger: AAGCCCCCGTGTGATCCGATTCTTCTGGTACACCCAGGCAAGAACCCAGGATACAGAAAGGCCTCGGTCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CAA 72 bp | GTGGAAAGGACCGAGGCCTTTCTGTATCCTGGGTTCTaGCCTGGGTGTACCAGAAGAATCGGATCACACGGG | + |
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Preference number: 6 (lower is better) Translates to: VERTEAFLYPGF*PGCTRRIGSHG Trigger: CCCGTGTGATCCGATTCTTCTGGTACACCCAGGCAAGAACCCAGGATACAGAAAGGCCTCGGTCCTTTCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CCA 72 bp | GGTACTTGTGGAAAGGACCGAGGCCTTTCTGTATCCTaGGTTCTTGCCTGGGTGTACCAGAAGAATCGGATC | + |
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Preference number: 6 (lower is better) Translates to: GTCGKDRGLSVS*VLAWVYQKNRI Trigger: GATCCGATTCTTCTGGTACACCCAGGCAAGAACCCAGGATACAGAAAGGCCTCGGTCCTTTCCACAAGTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CAA 72 bp | GGGAGTCATTATCTGAGGCTCCAGTTGCCTGTCCACTaGGAGTTTGATGGTTCCACAAGAAAGACAGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: GSHYLRLQLPVH*EFDGSTRKTGG Trigger: ACCACCTGTCTTTCTTGTGGAACCATCAAACTCCAAGTGGACAGGCAACTGGAGCCTCAGATAATGACTCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CAA 90 bp | CTAGCAAAGGGGAGTCATTATCTGAGGCTCCAGTTGCCTGTCCACTaGGAGTTTGATGGTTCCACAAGAAAGACAGGTGGTAGGGTTTTC | + |
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Preference number: 6 (lower is better) Translates to: LAKGSHYLRLQLPVH*EFDGSTRKTGGRVF Trigger: GAAAACCCTACCACCTGTCTTTCTTGTGGAACCATCAAACTCCAAGTGGACAGGCAACTGGAGCCTCAGATAATGACTCCCCTTTGCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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| CDS CAA 72 bp | TTCCTAGCAAAGGGGAGTCATTATCTGAGGCTCCAGTaGCCTGTCCACTTGGAGTTTGATGGTTCCACAAGA | + |
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Preference number: 6 (lower is better) Translates to: FLAKGSHYLRLQ*PVHLEFDGSTR Trigger: TCTTGTGGAACCATCAAACTCCAAGTGGACAGGCAACTGGAGCCTCAGATAATGACTCCCCTTTGCTAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449713.1 |
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