Pregenerated sensors for LINC02563 (Homo sapiens)
Ensembl gene IDs: ENSG00000263520Ensembl transcript IDs: ENST00000579474.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGGAATGAGGTTTCTGACAATAAAGGACCACCCTCGCAGTGGCGCTaGACTCTAGACAGGAGTCCTCATAGAATCCCAAACTCTCAGGGA | + |
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Preference number: 5 (lower is better) Translates to: GNEVSDNKGPPSQWR*TLDRSPHRIPNSQG Trigger: TCCCTGAGAGTTTGGGATTCTATGAGGACTCCTGTCTAGAGTGCAGCGCCACTGCGAGGGTGGTCCTTTATTGTCAGAAACCTCATTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000579474.1 |
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| CDS TCA 90 bp | CGAAACACCATCTCTAAATTCCCAACGGCCACTGGGTTTTCCTTCTaGTCCTTCACGACTGATAACGTTAATTGCGCCTCTCATCCACAG | + |
|
Preference number: 5 (lower is better) Translates to: RNTISKFPTATGFSF*SFTTDNVNCASHPQ Trigger: CTGTGGATGAGAGGCGCAATTAACGTTATCAGTCGTGAAGGATCAGAAGGAAAACCCAGTGGCCGTTGGGAATTTAGAGATGGTGTTTCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000579474.1 |
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| CDS GCA 72 bp | GTTTCTGACAATAAAGGACCACCCTCGCAGTGGCGCTaGACTCTAGACAGGAGTCCTCATAGAATCCCAAAC | + |
|
Preference number: 6 (lower is better) Translates to: VSDNKGPPSQWR*TLDRSPHRIPN Trigger: GTTTGGGATTCTATGAGGACTCCTGTCTAGAGTGCAGCGCCACTGCGAGGGTGGTCCTTTATTGTCAGAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000579474.1 |
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| CDS CCA 72 bp | AATGAGGTTTCTGACAATAAAGGACCACCCTCGCAGTaGCGCTGCACTCTAGACAGGAGTCCTCATAGAATC | + |
|
Preference number: 6 (lower is better) Translates to: NEVSDNKGPPSQ*RCTLDRSPHRI Trigger: GATTCTATGAGGACTCCTGTCTAGAGTGCAGCGCCACTGCGAGGGTGGTCCTTTATTGTCAGAAACCTCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000579474.1 |
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| CDS TCA 72 bp | ATCTCTAAATTCCCAACGGCCACTGGGTTTTCCTTCTaGTCCTTCACGACTGATAACGTTAATTGCGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: ISKFPTATGFSF*SFTTDNVNCAS Trigger: AGAGGCGCAATTAACGTTATCAGTCGTGAAGGATCAGAAGGAAAACCCAGTGGCCGTTGGGAATTTAGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000579474.1 |
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