Pregenerated sensors for LINC02560 (Homo sapiens)
Ensembl gene IDs: ENSG00000268307Ensembl transcript IDs: ENST00000596379.1
Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCCGTGCTGGGCCCTCTGGCACCCGGCTTCACAAGCACCCAGGCCTaGCAGGAGGAGCAAGTCCGGGGCCGAAGTGCCAAGGGGCAGGGT | + |
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Preference number: 5 (lower is better) Translates to: AVLGPLAPGFTSTQA*QEEQVRGRSAKGQG Trigger: ACCCTGCCCCTTGGCACTTCGGCCCCGGACTTGCTCCTCCTGGCAGGCCTGGGTGCTTGTGAAGCCGGGTGCCAGAGGGCCCAGCACGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000596379.1 |
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| CDS CCA 90 bp | GATTTACAGAAAACAGAATCAAAGGCCGTGCCGTGCTGGGCCCTCTaGCACCCGGCTTCACAAGCACCCAGGCCTGCCAGGAGGAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: DLQKTESKAVPCWAL*HPASQAPRPARRSK Trigger: CTTGCTCCTCCTGGCAGGCCTGGGTGCTTGTGAAGCCGGGTGCCAGAGGGCCCAGCACGGCACGGCCTTTGATTCTGTTTTCTGTAAATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000596379.1 |
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| CDS GCA 90 bp | AGGCAGGCAGACATTGGGCACCAAGGTGGTAATCAGCAGACCAGATaGCCAGCAACTCCTAGGCTCAGTCATCAGCCTCATTTTACTGCA | + |
|
Preference number: 5 (lower is better) Translates to: RQADIGHQGGNQQTR*PATPRLSHQPHFTA Trigger: TGCAGTAAAATGAGGCTGATGACTGAGCCTAGGAGTTGCTGGGCATCTGGTCTGCTGATTACCACCTTGGTGCCCAATGTCTGCCTGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000596379.1 |
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| CDS GCA 72 bp | GGCCCTCTGGCACCCGGCTTCACAAGCACCCAGGCCTaGCAGGAGGAGCAAGTCCGGGGCCGAAGTGCCAAG | + |
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Preference number: 6 (lower is better) Translates to: GPLAPGFTSTQA*QEEQVRGRSAK Trigger: CTTGGCACTTCGGCCCCGGACTTGCTCCTCCTGGCAGGCCTGGGTGCTTGTGAAGCCGGGTGCCAGAGGGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000596379.1 |
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| CDS TCA 72 bp | GCGTCCCCCTGGGTGGTGTCAGGCAGCCTCTTTGTTTaGAAGCAGTGGATAGGCAGGCAGACATTGGGCACC | + |
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Preference number: 6 (lower is better) Translates to: ASPWVVSGSLFV*KQWIGRQTLGT Trigger: GGTGCCCAATGTCTGCCTGCCTATCCACTGCTTTCAAACAAAGAGGCTGCCTGACACCACCCAGGGGGACGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000596379.1 |
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| CDS CAA 72 bp | GGCGTCCCCCTGGGTGGTGTCAGGCAGCCTCTTTGTTaGAAAGCAGTGGATAGGCAGGCAGACATTGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: GVPLGGVRQPLC*KAVDRQADIGH Trigger: GTGCCCAATGTCTGCCTGCCTATCCACTGCTTTCAAACAAAGAGGCTGCCTGACACCACCCAGGGGGACGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000596379.1 |
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| CDS GCA 72 bp | GTCGATTTACAGAAAACAGAATCAAAGGCCGTGCCGTaGTGGGCCCTCTGGCACCCGGCTTCACAAGCACCC | + |
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Preference number: 6 (lower is better) Translates to: VDLQKTESKAVP*WALWHPASQAP Trigger: GGGTGCTTGTGAAGCCGGGTGCCAGAGGGCCCAGCACGGCACGGCCTTTGATTCTGTTTTCTGTAAATCGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000596379.1 |
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| CDS GCA 72 bp | TTGTCGTCGATTTACAGAAAACAGAATCAAAGGCCGTaGCGTGCTGGGCCCTCTGGCACCCGGCTTCACAAG | + |
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Preference number: 6 (lower is better) Translates to: LSSIYRKQNQRP*RAGPSGTRLHK Trigger: CTTGTGAAGCCGGGTGCCAGAGGGCCCAGCACGGCACGGCCTTTGATTCTGTTTTCTGTAAATCGACGACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000596379.1 |
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