Pregenerated sensors for LINC02555 (Homo sapiens)
Ensembl gene IDs: ENSG00000260943Ensembl transcript IDs: ENST00000563933.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCTAGGAAAGATGATATTGGGCTGATTCTGAAAACAGGATGTACTTaGCTAGTGGGTAATGGCAGTGGAGGTTGTCGGGGAGCTTTCCAG | + |
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Preference number: 5 (lower is better) Translates to: PRKDDIGLILKTGCT*LVGNGSGGCRGAFQ Trigger: CTGGAAAGCTCCCCGACAACCTCCACTGCCATTACCCACTAGGCAAGTACATCCTGTTTTCAGAATCAGCCCAATATCATCTTTCCTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000563933.1 |
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| CDS CCA 90 bp | TGCTGGAAGTTCCACATGATTGGAAGAGGACTGAAAATAGGAATGTaGCAAGAAATAAGCTGTGGCCAGATCACAGAGAGCCCTTCCTAT | + |
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Preference number: 5 (lower is better) Translates to: CWKFHMIGRGLKIGM*QEISCGQITESPSY Trigger: ATAGGAAGGGCTCTCTGTGATCTGGCCACAGCTTATTTCTTGCCACATTCCTATTTTCAGTCCTCTTCCAATCATGTGGAACTTCCAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563933.1 |
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| CDS TCA 90 bp | TGGCAGTTTCATGATAAACATCTGCTTGAATCATCTTTGTTCTTATaGAATTTTGCTTATCCACCGGAGAAACACATACTGTTGGCCCAA | + |
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Preference number: 5 (lower is better) Translates to: WQFHDKHLLESSLFL*NFAYPPEKHILLAQ Trigger: TTGGGCCAACAGTATGTGTTTCTCCGGTGGATAAGCAAAATTTCATAAGAACAAAGATGATTCAAGCAGATGTTTATCATGAAACTGCCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563933.1 |
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| CDS GCA 90 bp | AAATTTCCAAGGACTGGATTTGATGTTTATCTTTGTGACTTCGGGTaGTTTTTATGGCAGTTTCATGATAAACATCTGCTTGAATCATCT | + |
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Preference number: 5 (lower is better) Translates to: KFPRTGFDVYLCDFG*FLWQFHDKHLLESS Trigger: AGATGATTCAAGCAGATGTTTATCATGAAACTGCCATAAAAAGCACCCGAAGTCACAAAGATAAACATCAAATCCAGTCCTTGGAAATTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000563933.1 |
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| CDS GCA 90 bp | TCCAAAGGTGAGCAATACAATTTTTGTCTACACATAAGTTATGGTTaGTCAGTGGAAAATACAAATGCCAACAAACCAATGCAGTGTTAT | + |
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Preference number: 5 (lower is better) Translates to: SKGEQYNFCLHISYG*SVENTNANKPMQCY Trigger: ATAACACTGCATTGGTTTGTTGGCATTTGTATTTTCCACTGAGCAACCATAACTTATGTGTAGACAAAAATTGTATTGCTCACCTTTGGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000563933.1 |
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| CDS GCA 72 bp | GATGATATTGGGCTGATTCTGAAAACAGGATGTACTTaGCTAGTGGGTAATGGCAGTGGAGGTTGTCGGGGA | + |
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Preference number: 6 (lower is better) Translates to: DDIGLILKTGCT*LVGNGSGGCRG Trigger: TCCCCGACAACCTCCACTGCCATTACCCACTAGGCAAGTACATCCTGTTTTCAGAATCAGCCCAATATCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000563933.1 |
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| CDS CCA 72 bp | AGGACTGAAAATAGGAATGTGGCAAGAAATAAGCTGTaGCCAGATCACAGAGAGCCCTTCCTATTCACAACT | + |
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Preference number: 6 (lower is better) Translates to: RTENRNVARNKL*PDHREPFLFTT Trigger: AGTTGTGAATAGGAAGGGCTCTCTGTGATCTGGCCACAGCTTATTTCTTGCCACATTCCTATTTTCAGTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563933.1 |
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| CDS GCA 72 bp | TACTCCAGCATGATGTTGAACATCGGAAATAGTGCCTaGACTATGTTGTTTCAGATGTATCTTGATTGTGTT | + |
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Preference number: 6 (lower is better) Translates to: YSSMMLNIGNSA*TMLFQMYLDCV Trigger: AACACAATCAAGATACATCTGAAACAACATAGTGCAGGCACTATTTCCGATGTTCAACATCATGCTGGAGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563933.1 |
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| CDS CAA 72 bp | AACATCTGCTTGAATCATCTTTGTTCTTATGAAATTTaGCTTATCCACCGGAGAAACACATACTGTTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: NICLNHLCSYEI*LIHRRNTYCWP Trigger: GGGCCAACAGTATGTGTTTCTCCGGTGGATAAGCAAAATTTCATAAGAACAAAGATGATTCAAGCAGATGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563933.1 |
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| CDS GCA 72 bp | AGGACTGGATTTGATGTTTATCTTTGTGACTTCGGGTaGTTTTTATGGCAGTTTCATGATAAACATCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: RTGFDVYLCDFG*FLWQFHDKHLL Trigger: AAGCAGATGTTTATCATGAAACTGCCATAAAAAGCACCCGAAGTCACAAAGATAAACATCAAATCCAGTCCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000563933.1 |
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| CDS TCA 72 bp | AGTGAAAAGGACAAAGTAATGTCTAATATGTGCAACTaGTTTAACACAAGATCAAATCTCAAGATATGGGGG | + |
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Preference number: 6 (lower is better) Translates to: SEKDKVMSNMCN*FNTRSNLKIWG Trigger: CCCCCATATCTTGAGATTTGATCTTGTGTTAAATCAGTTGCACATATTAGACATTACTTTGTCCTTTTCACT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563933.1 |
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| CDS GCA 72 bp | GAGCAATACAATTTTTGTCTACACATAAGTTATGGTTaGTCAGTGGAAAATACAAATGCCAACAAACCAATG | + |
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Preference number: 6 (lower is better) Translates to: EQYNFCLHISYG*SVENTNANKPM Trigger: CATTGGTTTGTTGGCATTTGTATTTTCCACTGAGCAACCATAACTTATGTGTAGACAAAAATTGTATTGCTC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000563933.1 |
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