Pregenerated sensors for LINC02550 (Homo sapiens)
Ensembl gene IDs: ENSG00000271584Ensembl transcript IDs: ENST00000603154.1, ENST00000636877.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGGAGGCCTCAAGCAGGAGCAGCCCCCGATTTCAACATAGAGCAATaGAAGAAGGGGCCAGCATCACAGAAGCCAGTGGCCAGGTCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: RRPQAGAAPDFNIEQ*KKGPASQKPVARSL Trigger: CAGAGACCTGGCCACTGGCTTCTGTGATGCTGGCCCCTTCTTTCATTGCTCTATGTTGAAATCGGGGGCTGCTCCTGCTTGAGGCCTCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000636877.1 |
||
| CDS GCA 90 bp | CAGCATCACAGAAGCCAGTGGCCAGGTCTCTGTCAACTTAGGAGCTaGAGTGCAACAGCAGAGCAGAGTGGCACAATTGATGGTCTTCGC | + |
|
Preference number: 5 (lower is better) Translates to: QHHRSQWPGLCQLRS*SATAEQSGTIDGLR Trigger: GCGAAGACCATCAATTGTGCCACTCTGCTCTGCTGTTGCACTGCAGCTCCTAAGTTGACAGAGACCTGGCCACTGGCTTCTGTGATGCTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636877.1 |
||
| CDS CCA 90 bp | TCCACCACCACGTGTTTCCTTGTGCTTCTCAAAGAAGAGGCTACCTaGGGTATGTTCTTCTCACAGGAGACCACAAAGCAAGAGTCCTGC | + |
|
Preference number: 5 (lower is better) Translates to: STTTCFLVLLKEEAT*GMFFSQETTKQESC Trigger: GCAGGACTCTTGCTTTGTGGTCTCCTGTGAGAAGAACATACCCCAGGTAGCCTCTTCTTTGAGAAGCACAAGGAAACACGTGGTGGTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000603154.1 |
||
| CDS TCA 90 bp | CTCACAGGAGACCACCCTGAGGAGTTGATCGTCTTCTTGAGGAGATaGGATTATACCTGGGAAACAAGTAGATTTGTAACAAAGGAGGCC | + |
|
Preference number: 5 (lower is better) Translates to: LTGDHPEELIVFLRR*DYTWETSRFVTKEA Trigger: GGCCTCCTTTGTTACAAATCTACTTGTTTCCCAGGTATAATCTCATCTCCTCAAGAAGACGATCAACTCCTCAGGGTGGTCTCCTGTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636877.1 |
||
| CDS CCA 90 bp | GGGACTTCTATATCCACCTCCTCTCAGATCTTAAGTTTGCTGGAGTaGCTTTCAGGTACTTGGCACCAAACAATTCTAACACAAGTGTTA | + |
|
Preference number: 5 (lower is better) Translates to: GTSISTSSQILSLLE*LSGTWHQTILTQVL Trigger: TAACACTTGTGTTAGAATTGTTTGGTGCCAAGTACCTGAAAGCCACTCCAGCAAACTTAAGATCTGAGAGGAGGTGGATATAGAAGTCCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636877.1 |
||
| CDS GCA 72 bp | GGGCTGTCTAGCAGCCTGCTGTGCCAGGCTCAGCGCTaGCTTCTCATCTCACGTGCTGGCAACTTCACAGGG | + |
|
Preference number: 6 (lower is better) Translates to: GLSSSLLCQAQR*LLISRAGNFTG Trigger: CCCTGTGAAGTTGCCAGCACGTGAGATGAGAAGGCAGCGCTGAGCCTGGCACAGCAGGCTGCTAGACAGCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636877.1 |
||
| CDS CAA 90 bp | GACCACAAAGCAAGAGTCCTGCTAGCAGGTTTCCCGCCTCACAGATaGAAGCCCAGGTCGCCACACAGGAACAGGCTCCTCCCCGCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: DHKARVLLAGFPPHR*KPRSPHRNRLLPAA Trigger: TGCAGCGGGGAGGAGCCTGTTCCTGTGTGGCGACCTGGGCTTCAATCTGTGAGGCGGGAAACCTGCTAGCAGGACTCTTGCTTTGTGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000603154.1 |
||
| CDS CAA 72 bp | GCAAGAGTCCTGCTAGCAGGTTTCCCGCCTCACAGATaGAAGCCCAGGTCGCCACACAGGAACAGGCTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: ARVLLAGFPPHR*KPRSPHRNRLL Trigger: GAGGAGCCTGTTCCTGTGTGGCGACCTGGGCTTCAATCTGTGAGGCGGGAAACCTGCTAGCAGGACTCTTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000603154.1 |
||
| CDS GCA 72 bp | GCTGTGCCAGGCTCAGCGCTGCCTTCTCATCTCACGTaGTGGCAACTTCACAGGGCAGAGCTTCTGTCTGAT | + |
|
Preference number: 6 (lower is better) Translates to: AVPGSALPSHLT*WQLHRAELLSD Trigger: ATCAGACAGAAGCTCTGCCCTGTGAAGTTGCCAGCACGTGAGATGAGAAGGCAGCGCTGAGCCTGGCACAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636877.1 |
||
| CDS CCA 72 bp | GTGCCAGGCTCAGCGCTGCCTTCTCATCTCACGTGCTaGCAACTTCACAGGGCAGAGCTTCTGTCTGATGCT | + |
|
Preference number: 6 (lower is better) Translates to: VPGSALPSHLTC*QLHRAELLSDA Trigger: AGCATCAGACAGAAGCTCTGCCCTGTGAAGTTGCCAGCACGTGAGATGAGAAGGCAGCGCTGAGCCTGGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636877.1 |
||
| CDS CAA 72 bp | GGAGCTGCAGTGCAACAGCAGAGCAGAGTGGCACAATaGATGGTCTTCGCACTGACCACAGGGCCTGGGACA | + |
|
Preference number: 6 (lower is better) Translates to: GAAVQQQSRVAQ*MVFALTTGPGT Trigger: TGTCCCAGGCCCTGTGGTCAGTGCGAAGACCATCAATTGTGCCACTCTGCTCTGCTGTTGCACTGCAGCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636877.1 |
||
| CDS CAA 90 bp | GTCAACTTAGGAGCTGCAGTGCAACAGCAGAGCAGAGTGGCACAATaGATGGTCTTCGCACTGACCACAGGGCCTGGGACAGCTGTAGAG | + |
|
Preference number: 6 (lower is better) Translates to: VNLGAAVQQQSRVAQ*MVFALTTGPGTAVE Trigger: CTCTACAGCTGTCCCAGGCCCTGTGGTCAGTGCGAAGACCATCAATTGTGCCACTCTGCTCTGCTGTTGCACTGCAGCTCCTAAGTTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636877.1 |
||
| CDS CAA 72 bp | GGCTGGCTTAGGTTGGGTTTAGCTCCAGGCTGTGGGTaGTGTTCAGTTCCACCACCACGTGTTTCCTTGTGC | + |
|
Preference number: 6 (lower is better) Translates to: GWLRLGLAPGCG*CSVPPPRVSLC Trigger: GCACAAGGAAACACGTGGTGGTGGAACTGAACACAACCCACAGCCTGGAGCTAAACCCAACCTAAGCCAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000603154.1 ENST00000636877.1 |
||
| CDS GCA 72 bp | AGAAGCCAGTGGCCAGGTCTCTGTCAACTTAGGAGCTaGAGTGCAACAGCAGAGCAGAGTGGCACAATTGAT | + |
|
Preference number: 6 (lower is better) Translates to: RSQWPGLCQLRS*SATAEQSGTID Trigger: ATCAATTGTGCCACTCTGCTCTGCTGTTGCACTGCAGCTCCTAAGTTGACAGAGACCTGGCCACTGGCTTCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636877.1 |
||
| CDS CAA 90 bp | GAAGAGCTTGGCTGGCTTAGGTTGGGTTTAGCTCCAGGCTGTGGGTaGTGTTCAGTTCCACCACCACGTGTTTCCTTGTGCTTCTCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: EELGWLRLGLAPGCG*CSVPPPRVSLCFSK Trigger: CTTTGAGAAGCACAAGGAAACACGTGGTGGTGGAACTGAACACAACCCACAGCCTGGAGCTAAACCCAACCTAAGCCAGCCAAGCTCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000603154.1 ENST00000636877.1 |
||
| CDS CAA 72 bp | GGGACTTCTATATCCACCTCCTCTCAGATCTTAAGTTaGCTGGAGTGGCTTTCAGGTACTTGGCACCAAACA | + |
|
Preference number: 6 (lower is better) Translates to: GTSISTSSQILS*LEWLSGTWHQT Trigger: TGTTTGGTGCCAAGTACCTGAAAGCCACTCCAGCAAACTTAAGATCTGAGAGGAGGTGGATATAGAAGTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636877.1 |
||
| CDS CCA 72 bp | ATATCCACCTCCTCTCAGATCTTAAGTTTGCTGGAGTaGCTTTCAGGTACTTGGCACCAAACAATTCTAACA | + |
|
Preference number: 6 (lower is better) Translates to: ISTSSQILSLLE*LSGTWHQTILT Trigger: TGTTAGAATTGTTTGGTGCCAAGTACCTGAAAGCCACTCCAGCAAACTTAAGATCTGAGAGGAGGTGGATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636877.1 |
||
| CDS CAA 90 bp | CACCTCCTCTCAGATCTTAAGTTTGCTGGAGTGGCTTTCAGGTACTaGGCACCAAACAATTCTAACACAAGTGTTATCCAAAGGAGTTTA | + |
|
Preference number: 6 (lower is better) Translates to: HLLSDLKFAGVAFRY*APNNSNTSVIQRSL Trigger: TAAACTCCTTTGGATAACACTTGTGTTAGAATTGTTTGGTGCCAAGTACCTGAAAGCCACTCCAGCAAACTTAAGATCTGAGAGGAGGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636877.1 |
||
| CDS CCA 72 bp | AACCATGGTATCCCTGAAGCCTGTATTATAAGTGTGTaGCACATATCAGCTACCCAACAAATAACTGTTGAA | + |
|
Preference number: 6 (lower is better) Translates to: NHGIPEACIISV*HISATQQITVE Trigger: TTCAACAGTTATTTGTTGGGTAGCTGATATGTGCCACACACTTATAATACAGGCTTCAGGGATACCATGGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000603154.1 |
||