Pregenerated sensors for LINC02549 (Homo sapiens)

Ensembl gene IDs: ENSG00000226497

Ensembl transcript IDs: ENST00000445346.1, ENST00000627030.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TTGAGCCTGGGAAGAGGAGGCGGCAGTGAGCCAAGATCATGCCTCTaGACTTCAGCCTGGAGCCTGGGCAGCAACAGAGGGAGACCAACA	+
Preference number: 5 (lower is better) Translates to: LSLGRGGGSEPRSCL*TSAWSLGSNRGRPT Trigger: TGTTGGTCTCCCTCTGTTGCTGCCCAGGCTCCAGGCTGAAGTGCAGAGGCATGATCTTGGCTCACTGCCGCCTCCTCTTCCCAGGCTCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000445346.1 ENST00000627030.1
CDS GCA 90 bp	TGTAGTATCTCTGTAGTGTGCAGATTCTGTTGCAGGGCACATTGCTaGTACTTTTCAGGGGCTGTAGTCCCAGTTGCTTGGGAGGCTGAG	+
Preference number: 5 (lower is better) Translates to: CSISVVCRFCCRAHC*YFSGAVVPVAWEAE Trigger: CTCAGCCTCCCAAGCAACTGGGACTACAGCCCCTGAAAAGTAGCAGCAATGTGCCCTGCAACAGAATCTGCACACTACAGAGATACTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445346.1
CDS GCA 72 bp	TCTGTAGTGTGCAGATTCTGTTGCAGGGCACATTGCTaGTACTTTTCAGGGGCTGTAGTCCCAGTTGCTTGG	+
Preference number: 6 (lower is better) Translates to: SVVCRFCCRAHC*YFSGAVVPVAW Trigger: CCAAGCAACTGGGACTACAGCCCCTGAAAAGTAGCAGCAATGTGCCCTGCAACAGAATCTGCACACTACAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445346.1
CDS CCA 72 bp	AGCCAAGATCATGCCTCTGCACTTCAGCCTGGAGCCTaGGCAGCAACAGAGGGAGACCAACATTTCATAAAT	+
Preference number: 6 (lower is better) Translates to: SQDHASALQPGA*AATEGDQHFIN Trigger: ATTTATGAAATGTTGGTCTCCCTCTGTTGCTGCCCAGGCTCCAGGCTGAAGTGCAGAGGCATGATCTTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000445346.1 ENST00000627030.1
CDS GCA 72 bp	ATCTCTGTAGTGTGCAGATTCTGTTGCAGGGCACATTaGTGCTACTTTTCAGGGGCTGTAGTCCCAGTTGCT	+
Preference number: 6 (lower is better) Translates to: ISVVCRFCCRAH*CYFSGAVVPVA Trigger: AGCAACTGGGACTACAGCCCCTGAAAAGTAGCAGCAATGTGCCCTGCAACAGAATCTGCACACTACAGAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445346.1
CDS GCA 72 bp	CTTCTTCATGGTAGCTTTTGTAGTATCTCTGTAGTGTaGAGATTCTGTTGCAGGGCACATTGCTGCTACTTT	+
Preference number: 6 (lower is better) Translates to: LLHGSFCSISVV*RFCCRAHCCYF Trigger: AAAGTAGCAGCAATGTGCCCTGCAACAGAATCTGCACACTACAGAGATACTACAAAAGCTACCATGAAGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445346.1
CDS CCA 72 bp	ATAGCAAAGCATGTACTCTCAGCAATAACATGGATGTaGCTTCTGAGAAAGTACTTGAGAGGTACAACCCAG	+
Preference number: 6 (lower is better) Translates to: IAKHVLSAITWM*LLRKYLRGTTQ Trigger: CTGGGTTGTACCTCTCAAGTACTTTCTCAGAAGCCACATCCATGTTATTGCTGAGAGTACATGCTTTGCTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445346.1
CDS CCA 72 bp	GGGTTTATAGCAAAGCATGTACTCTCAGCAATAACATaGATGTGGCTTCTGAGAAAGTACTTGAGAGGTACA	+
Preference number: 6 (lower is better) Translates to: GFIAKHVLSAIT*MWLLRKYLRGT Trigger: TGTACCTCTCAAGTACTTTCTCAGAAGCCACATCCATGTTATTGCTGAGAGTACATGCTTTGCTATAAACCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445346.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu