Pregenerated sensors for LINC02543 (Homo sapiens)
Ensembl gene IDs: ENSG00000232947Ensembl transcript IDs: ENST00000451285.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ACGGGGATGTGGCATGAGTCGGCATTAGCTTGCTCTGTGCTAAGATaGATCAGATATCGTGGGGCCCTTGGGAGCCTTGGACTAGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: TGMWHESALACSVLR*IRYRGALGSLGLEA Trigger: AGCCTCTAGTCCAAGGCTCCCAAGGGCCCCACGATATCTGATGCATCTTAGCACAGAGCAAGCTAATGCCGACTCATGCCACATCCCCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS GCA 90 bp | GACCTCTTGTGTGTAACGGGGATGTGGCATGAGTCGGCATTAGCTTaGTCTGTGCTAAGATGCATCAGATATCGTGGGGCCCTTGGGAGC | + |
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Preference number: 5 (lower is better) Translates to: DLLCVTGMWHESALA*SVLRCIRYRGALGS Trigger: GCTCCCAAGGGCCCCACGATATCTGATGCATCTTAGCACAGAGCAAGCTAATGCCGACTCATGCCACATCCCCGTTACACACAAGAGGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS CCA 90 bp | GCTCTGCCCTGCTTCCTCTCTGACCTCTTGTGTGTAACGGGGATGTaGCATGAGTCGGCATTAGCTTGCTCTGTGCTAAGATGCATCAGA | + |
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Preference number: 5 (lower is better) Translates to: ALPCFLSDLLCVTGM*HESALACSVLRCIR Trigger: TCTGATGCATCTTAGCACAGAGCAAGCTAATGCCGACTCATGCCACATCCCCGTTACACACAAGAGGTCAGAGAGGAAGCAGGGCAGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS TCA 90 bp | CTTCCTTCGCTGCTTAGGGGCCTTCAAGTCAGCGCCCTTCTGCCATaGAGCAGAGGGTCTATGAACATGGACAAGGCACTAATGCAGATT | + |
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Preference number: 5 (lower is better) Translates to: LPSLLRGLQVSALLP*SRGSMNMDKALMQI Trigger: AATCTGCATTAGTGCCTTGTCCATGTTCATAGACCCTCTGCTTCATGGCAGAAGGGCGCTGACTTGAAGGCCCCTAAGCAGCGAAGGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS TCA 90 bp | ACAGAGCTTGAGGTGGTCCAGCTGAATTCTTTCCTCTGCTGGTCATaGTGTGCACCACAGAATTGGAGGGAAACCAGCATGTGCCAGGGA | + |
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Preference number: 5 (lower is better) Translates to: TELEVVQLNSFLCWS*CAPQNWRETSMCQG Trigger: TCCCTGGCACATGCTGGTTTCCCTCCAATTCTGTGGTGCACATCATGACCAGCAGAGGAAAGAATTCAGCTGGACCACCTCAAGCTCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS TCA 90 bp | AGCAAAGCTTTCAACTCCGTCACACAGAGCTTGAGGTGGTCCAGCTaGATTCTTTCCTCTGCTGGTCATGATGTGCACCACAGAATTGGA | + |
|
Preference number: 5 (lower is better) Translates to: SKAFNSVTQSLRWSS*ILSSAGHDVHHRIG Trigger: TCCAATTCTGTGGTGCACATCATGACCAGCAGAGGAAAGAATTCAGCTGGACCACCTCAAGCTCTGTGTGACGGAGTTGAAAGCTTTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS TCA 90 bp | CCAACATATACATCAGCAAAGCTTTCAACTCCGTCACACAGAGCTTaGGGTGGTCCAGCTGAATTCTTTCCTCTGCTGGTCATGATGTGC | + |
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Preference number: 5 (lower is better) Translates to: PTYTSAKLSTPSHRA*GGPAEFFPLLVMMC Trigger: GCACATCATGACCAGCAGAGGAAAGAATTCAGCTGGACCACCTCAAGCTCTGTGTGACGGAGTTGAAAGCTTTGCTGATGTATATGTTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS CAA 90 bp | CCAGCTGAATTCTTTCCTCTGCTGGTCATGATGTGCACCACAGAATaGGAGGGAAACCAGCATGTGCCAGGGAAGCCAGCTAGGGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: PAEFFPLLVMMCTTE*EGNQHVPGKPAREG Trigger: CCCCTCCCTAGCTGGCTTCCCTGGCACATGCTGGTTTCCCTCCAATTCTGTGGTGCACATCATGACCAGCAGAGGAAAGAATTCAGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS TCA 72 bp | CTGCTTAGGGGCCTTCAAGTCAGCGCCCTTCTGCCATaGAGCAGAGGGTCTATGAACATGGACAAGGCACTA | + |
|
Preference number: 6 (lower is better) Translates to: LLRGLQVSALLP*SRGSMNMDKAL Trigger: TAGTGCCTTGTCCATGTTCATAGACCCTCTGCTTCATGGCAGAAGGGCGCTGACTTGAAGGCCCCTAAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS GCA 72 bp | TGGCATGAGTCGGCATTAGCTTGCTCTGTGCTAAGATaGATCAGATATCGTGGGGCCCTTGGGAGCCTTGGA | + |
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Preference number: 6 (lower is better) Translates to: WHESALACSVLR*IRYRGALGSLG Trigger: TCCAAGGCTCCCAAGGGCCCCACGATATCTGATGCATCTTAGCACAGAGCAAGCTAATGCCGACTCATGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS GCA 72 bp | TGTGTAACGGGGATGTGGCATGAGTCGGCATTAGCTTaGTCTGTGCTAAGATGCATCAGATATCGTGGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: CVTGMWHESALA*SVLRCIRYRGA Trigger: GGCCCCACGATATCTGATGCATCTTAGCACAGAGCAAGCTAATGCCGACTCATGCCACATCCCCGTTACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS CAA 72 bp | TTCTTTCCTCTGCTGGTCATGATGTGCACCACAGAATaGGAGGGAAACCAGCATGTGCCAGGGAAGCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: FFPLLVMMCTTE*EGNQHVPGKPA Trigger: AGCTGGCTTCCCTGGCACATGCTGGTTTCCCTCCAATTCTGTGGTGCACATCATGACCAGCAGAGGAAAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS TCA 72 bp | TTCAACTCCGTCACACAGAGCTTGAGGTGGTCCAGCTaGATTCTTTCCTCTGCTGGTCATGATGTGCACCAC | + |
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Preference number: 6 (lower is better) Translates to: FNSVTQSLRWSS*ILSSAGHDVHH Trigger: GTGGTGCACATCATGACCAGCAGAGGAAAGAATTCAGCTGGACCACCTCAAGCTCTGTGTGACGGAGTTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS CCA 72 bp | TGCTTCCTCTCTGACCTCTTGTGTGTAACGGGGATGTaGCATGAGTCGGCATTAGCTTGCTCTGTGCTAAGA | + |
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Preference number: 6 (lower is better) Translates to: CFLSDLLCVTGM*HESALACSVLR Trigger: TCTTAGCACAGAGCAAGCTAATGCCGACTCATGCCACATCCCCGTTACACACAAGAGGTCAGAGAGGAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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| CDS TCA 72 bp | ACATCAGCAAAGCTTTCAACTCCGTCACACAGAGCTTaGGGTGGTCCAGCTGAATTCTTTCCTCTGCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: TSAKLSTPSHRA*GGPAEFFPLLV Trigger: GACCAGCAGAGGAAAGAATTCAGCTGGACCACCTCAAGCTCTGTGTGACGGAGTTGAAAGCTTTGCTGATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451285.1 |
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