Pregenerated sensors for LINC02541 (Homo sapiens)
Ensembl gene IDs: ENSG00000230943Ensembl transcript IDs: ENST00000427157.1, ENST00000452675.2, ENST00000649523.1, ENST00000654213.1, ENST00000657627.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CGAGCCGTAGGGCTGTCAAGTCCCGGTGCTGCTGCAGTGCACGTCTaGACCCAGAGCAGAATGACATGGGCCCCTGACTTTCTGAGTCAC | + |
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Preference number: 5 (lower is better) Translates to: RAVGLSSPGAAAVHV*TQSRMTWAPDFLSH Trigger: GTGACTCAGAAAGTCAGGGGCCCATGTCATTCTGCTCTGGGTTCAGACGTGCACTGCAGCAGCACCGGGACTTGACAGCCCTACGGCTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452675.2 |
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| CDS TCA 90 bp | TGCTGCAGTGCACGTCTGAACCCAGAGCAGAATGACATGGGCCCCTaGCTTTCTGAGTCACTCCTTGGGTCTGAGTCTTCACAGCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: CCSARLNPEQNDMGP*LSESLLGSESSQPQ Trigger: CTGGGGCTGTGAAGACTCAGACCCAAGGAGTGACTCAGAAAGTCAGGGGCCCATGTCATTCTGCTCTGGGTTCAGACGTGCACTGCAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452675.2 |
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| CDS TCA 90 bp | GGCCCTCATGTCGTAATTTCCCAGACTTGTTCCTCTTGGCAGTGTTaGGCTCCGCGTTTTCTCCCAGGGAGCAGAGCAACTTCTTACAAA | + |
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Preference number: 5 (lower is better) Translates to: GPHVVISQTCSSWQC*APRFLPGSRATSYK Trigger: TTTGTAAGAAGTTGCTCTGCTCCCTGGGAGAAAACGCGGAGCTCAACACTGCCAAGAGGAACAAGTCTGGGAAATTACGACATGAGGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS TCA 90 bp | TACAAAACCTTACTTCGTGGGTTTTCCCAGGTGCCTGTTATTTCCTaGGCAGCACATAGTAGCAGTCCCTTAATCTTTACAGTTCTGAAA | + |
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Preference number: 5 (lower is better) Translates to: YKTLLRGFSQVPVIS*AAHSSSPLIFTVLK Trigger: TTTCAGAACTGTAAAGATTAAGGGACTGCTACTATGTGCTGCTCAGGAAATAACAGGCACCTGGGAAAACCCACGAAGTAAGGTTTTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS CCA 90 bp | TTCATACTTGGCAGATTGTACATTGAAGAGGACCTGTTTCTTATTTaGCTGTTCAAATCACCTGGAATGGCCATTAAATTCAAAGGGATT | + |
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Preference number: 5 (lower is better) Translates to: FILGRLYIEEDLFLI*LFKSPGMAIKFKGI Trigger: AATCCCTTTGAATTTAATGGCCATTCCAGGTGATTTGAACAGCCAAATAAGAAACAGGTCCTCTTCAATGTACAATCTGCCAAGTATGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000649523.1 ENST00000654213.1 ENST00000657627.1 |
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| CDS CCA 90 bp | TCTATGATGATTCCTCTGGAACTGCTATTTTCTTTGATTTATGAGTaGTTTGAGATGGAGCCAATAATAATGTACATTCCAAACTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: SMMIPLELLFSLIYE*FEMEPIIMYIPNFW Trigger: CCAGAAGTTTGGAATGTACATTATTATTGGCTCCATCTCAAACCACTCATAAATCAAAGAAAATAGCAGTTCCAGAGGAATCATCATAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000649523.1 ENST00000654213.1 ENST00000657627.1 |
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| CDS TCA 72 bp | GGGCTGTCAAGTCCCGGTGCTGCTGCAGTGCACGTCTaGACCCAGAGCAGAATGACATGGGCCCCTGACTTT | + |
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Preference number: 6 (lower is better) Translates to: GLSSPGAAAVHV*TQSRMTWAPDF Trigger: AAAGTCAGGGGCCCATGTCATTCTGCTCTGGGTTCAGACGTGCACTGCAGCAGCACCGGGACTTGACAGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452675.2 |
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| CDS CAA 72 bp | GGGCCCTCATGTCGTAATTTCCCAGACTTGTTCCTCTaGGCAGTGTTGAGCTCCGCGTTTTCTCCCAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: GPSCRNFPDLFL*AVLSSAFSPRE Trigger: CTCCCTGGGAGAAAACGCGGAGCTCAACACTGCCAAGAGGAACAAGTCTGGGAAATTACGACATGAGGGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS TCA 72 bp | GCACGTCTGAACCCAGAGCAGAATGACATGGGCCCCTaGCTTTCTGAGTCACTCCTTGGGTCTGAGTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: ARLNPEQNDMGP*LSESLLGSESS Trigger: TGAAGACTCAGACCCAAGGAGTGACTCAGAAAGTCAGGGGCCCATGTCATTCTGCTCTGGGTTCAGACGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452675.2 |
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| CDS TCA 72 bp | GTCGTAATTTCCCAGACTTGTTCCTCTTGGCAGTGTTaGGCTCCGCGTTTTCTCCCAGGGAGCAGAGCAACT | + |
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Preference number: 6 (lower is better) Translates to: VVISQTCSSWQC*APRFLPGSRAT Trigger: AGTTGCTCTGCTCCCTGGGAGAAAACGCGGAGCTCAACACTGCCAAGAGGAACAAGTCTGGGAAATTACGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS CCA 72 bp | GAGCAGACTTCCCTTTCTCACCAGGTTCACACAGCATaGGGGCCTAGAAGCCTCTATGATGATTCCTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: EQTSLSHQVHTA*GPRSLYDDSSG Trigger: TCCAGAGGAATCATCATAGAGGCTTCTAGGCCCCCATGCTGTGTGAACCTGGTGAGAAAGGGAAGTCTGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000649523.1 ENST00000654213.1 ENST00000657627.1 |
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| CDS CAA 72 bp | TGTCGTAATTTCCCAGACTTGTTCCTCTTGGCAGTGTaGAGCTCCGCGTTTTCTCCCAGGGAGCAGAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: CRNFPDLFLLAV*SSAFSPREQSN Trigger: GTTGCTCTGCTCCCTGGGAGAAAACGCGGAGCTCAACACTGCCAAGAGGAACAAGTCTGGGAAATTACGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS CAA 90 bp | GGGCCCTCATGTCGTAATTTCCCAGACTTGTTCCTCTTGGCAGTGTaGAGCTCCGCGTTTTCTCCCAGGGAGCAGAGCAACTTCTTACAA | + |
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Preference number: 6 (lower is better) Translates to: GPSCRNFPDLFLLAV*SSAFSPREQSNFLQ Trigger: TTGTAAGAAGTTGCTCTGCTCCCTGGGAGAAAACGCGGAGCTCAACACTGCCAAGAGGAACAAGTCTGGGAAATTACGACATGAGGGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS CAA 90 bp | AATTCACAAGGGCCCTCATGTCGTAATTTCCCAGACTTGTTCCTCTaGGCAGTGTTGAGCTCCGCGTTTTCTCCCAGGGAGCAGAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: NSQGPSCRNFPDLFL*AVLSSAFSPREQSN Trigger: GTTGCTCTGCTCCCTGGGAGAAAACGCGGAGCTCAACACTGCCAAGAGGAACAAGTCTGGGAAATTACGACATGAGGGCCCTTGTGAATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS CAA 90 bp | ACCCAGAGCAGAATGACATGGGCCCCTGACTTTCTGAGTCACTCCTaGGGTCTGAGTCTTCACAGCCCCAGAGTCATTTATCAGCAAATA | + |
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Preference number: 6 (lower is better) Translates to: TQSRMTWAPDFLSHS*GLSLHSPRVIYQQI Trigger: TATTTGCTGATAAATGACTCTGGGGCTGTGAAGACTCAGACCCAAGGAGTGACTCAGAAAGTCAGGGGCCCATGTCATTCTGCTCTGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452675.2 |
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| CDS CAA 72 bp | AGAATGACATGGGCCCCTGACTTTCTGAGTCACTCCTaGGGTCTGAGTCTTCACAGCCCCAGAGTCATTTAT | + |
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Preference number: 6 (lower is better) Translates to: RMTWAPDFLSHS*GLSLHSPRVIY Trigger: ATAAATGACTCTGGGGCTGTGAAGACTCAGACCCAAGGAGTGACTCAGAAAGTCAGGGGCCCATGTCATTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452675.2 |
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| CDS TCA 72 bp | ACATGGAGATCAGAACCCAAGTCTTTGGAGTGTAAATaGGGCAGTCTTTCCCCAGGACTCCTGTCCTCTTAC | + |
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Preference number: 6 (lower is better) Translates to: TWRSEPKSLECK*GSLSPGLLSSY Trigger: GTAAGAGGACAGGAGTCCTGGGGAAAGACTGCCTCATTTACACTCCAAAGACTTGGGTTCTGATCTCCATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS CCA 72 bp | AGGGAGCAGAGCAACTTCTTACAAAACCTTACTTCGTaGGTTTTCCCAGGTGCCTGTTATTTCCTGAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: REQSNFLQNLTS*VFPGACYFLSS Trigger: GCTGCTCAGGAAATAACAGGCACCTGGGAAAACCCACGAAGTAAGGTTTTGTAAGAAGTTGCTCTGCTCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS CAA 72 bp | AATTCACAAGGGCCCTCATGTCGTAATTTCCCAGACTaGTTCCTCTTGGCAGTGTTGAGCTCCGCGTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: NSQGPSCRNFPD*FLLAVLSSAFS Trigger: AGAAAACGCGGAGCTCAACACTGCCAAGAGGAACAAGTCTGGGAAATTACGACATGAGGGCCCTTGTGAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS CAA 90 bp | AGACTCTGTCTACTTGGTGTTCCCAGAGCATGTGTATTTCTCTCTTaGATAGCATTCACCAAATCATTTGCTGGATTATCCTTGGCTATT | + |
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Preference number: 6 (lower is better) Translates to: RLCLLGVPRACVFLS*IAFTKSFAGLSLAI Trigger: AATAGCCAAGGATAATCCAGCAAATGATTTGGTGAATGCTATCAAAGAGAGAAATACACATGCTCTGGGAACACCAAGTAGACAGAGTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS TCA 72 bp | GCAAAGTGCCTTCAGAAAGTCTTGTCTTATTTCAATTaGTTCCTTTGCAACAACCCAATAGGAGTCAGGACA | + |
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Preference number: 6 (lower is better) Translates to: AKCLQKVLSYFN*FLCNNPIGVRT Trigger: TGTCCTGACTCCTATTGGGTTGTTGCAAAGGAATCAATTGAAATAAGACAAGACTTTCTGAAGGCACTTTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS GCA 72 bp | CATCAATTCACAAGGGCCCGTGGGAAAATGATTACTTaGCAGGAAGTAGAACCTATGAATCATTATACTGTT | + |
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Preference number: 6 (lower is better) Translates to: HQFTRARGKMIT*QEVEPMNHYTV Trigger: AACAGTATAATGATTCATAGGTTCTACTTCCTGGCAAGTAATCATTTTCCCACGGGCCCTTGTGAATTGATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000452675.2 ENST00000654213.1 ENST00000657627.1 |
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| CDS CCA 72 bp | GGCAGATTGTACATTGAAGAGGACCTGTTTCTTATTTaGCTGTTCAAATCACCTGGAATGGCCATTAAATTC | + |
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Preference number: 6 (lower is better) Translates to: GRLYIEEDLFLI*LFKSPGMAIKF Trigger: GAATTTAATGGCCATTCCAGGTGATTTGAACAGCCAAATAAGAAACAGGTCCTCTTCAATGTACAATCTGCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000427157.1 ENST00000649523.1 ENST00000654213.1 ENST00000657627.1 |
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| CDS CCA 72 bp | TCTATCTGTTTTGTTCAAAGTTTAATCCCCAGCAGCTaGCCCAATACCTTGTATTTAAATCCAGATGTGGGT | + |
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Preference number: 6 (lower is better) Translates to: SICFVQSLIPSS*PNTLYLNPDVG Trigger: ACCCACATCTGGATTTAAATACAAGGTATTGGGCCAGCTGCTGGGGATTAAACTTTGAACAAAACAGATAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000649523.1 ENST00000654213.1 |
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| CDS CAA 72 bp | TCATCAATTCACAAGGGCCCGTGGGAAAATGATTACTaGCCAGGAAGTAGAACCTATGAATCATTATACTGT | + |
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Preference number: 6 (lower is better) Translates to: SSIHKGPWENDY*PGSRTYESLYC Trigger: ACAGTATAATGATTCATAGGTTCTACTTCCTGGCAAGTAATCATTTTCCCACGGGCCCTTGTGAATTGATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000452675.2 ENST00000654213.1 ENST00000657627.1 |
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| CDS CAA 90 bp | GGCAAAGTGCCTTCAGAAAGTCTTGTCTTATTTCAATTGATTCCTTaGCAACAACCCAATAGGAGTCAGGACATGTATCATTATTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: GKVPSESLVLFQLIP*QQPNRSQDMYHYFQ Trigger: CTGGAAATAATGATACATGTCCTGACTCCTATTGGGTTGTTGCAAAGGAATCAATTGAAATAAGACAAGACTTTCTGAAGGCACTTTGCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS CAA 90 bp | GGCCTAGAAGCCTCTATGATGATTCCTCTGGAACTGCTATTTTCTTaGATTTATGAGTGGTTTGAGATGGAGCCAATAATAATGTACATT | + |
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Preference number: 6 (lower is better) Translates to: GLEASMMIPLELLFS*IYEWFEMEPIIMYI Trigger: AATGTACATTATTATTGGCTCCATCTCAAACCACTCATAAATCAAAGAAAATAGCAGTTCCAGAGGAATCATCATAGAGGCTTCTAGGCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000649523.1 ENST00000654213.1 ENST00000657627.1 |
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| CDS CAA 72 bp | CCTTCAGAAAGTCTTGTCTTATTTCAATTGATTCCTTaGCAACAACCCAATAGGAGTCAGGACATGTATCAT | + |
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Preference number: 6 (lower is better) Translates to: PSESLVLFQLIP*QQPNRSQDMYH Trigger: ATGATACATGTCCTGACTCCTATTGGGTTGTTGCAAAGGAATCAATTGAAATAAGACAAGACTTTCTGAAGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS CAA 72 bp | AATAATGATGGTCATTCAGACTTCATACTTGGCAGATaGTACATTGAAGAGGACCTGTTTCTTATTTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: NNDGHSDFILGR*YIEEDLFLIWL Trigger: CAGCCAAATAAGAAACAGGTCCTCTTCAATGTACAATCTGCCAAGTATGAAGTCTGAATGACCATCATTATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000649523.1 ENST00000654213.1 ENST00000657627.1 |
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| CDS CAA 90 bp | ATAATAATGATGGTCATTCAGACTTCATACTTGGCAGATTGTACATaGAAGAGGACCTGTTTCTTATTTGGCTGTTCAAATCACCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: IIMMVIQTSYLADCT*KRTCFLFGCSNHLE Trigger: TTCCAGGTGATTTGAACAGCCAAATAAGAAACAGGTCCTCTTCAATGTACAATCTGCCAAGTATGAAGTCTGAATGACCATCATTATTAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000649523.1 ENST00000654213.1 ENST00000657627.1 |
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| CDS CAA 72 bp | GAGACAATACAAAGAAATGCACAGTGCATGATTTTATaGTGTGAAATTATAAAACAGGCAAAGTCAGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: ETIQRNAQCMIL*CEIIKQAKSAR Trigger: CCTGGCTGACTTTGCCTGTTTTATAATTTCACACAATAAAATCATGCACTGTGCATTTCTTTGTATTGTCTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000649523.1 |
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| CDS CCA 72 bp | ATTCCTCTGGAACTGCTATTTTCTTTGATTTATGAGTaGTTTGAGATGGAGCCAATAATAATGTACATTCCA | + |
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Preference number: 6 (lower is better) Translates to: IPLELLFSLIYE*FEMEPIIMYIP Trigger: TGGAATGTACATTATTATTGGCTCCATCTCAAACCACTCATAAATCAAAGAAAATAGCAGTTCCAGAGGAAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000649523.1 ENST00000654213.1 ENST00000657627.1 |
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