Pregenerated sensors for LINC02540 (Homo sapiens)
Ensembl gene IDs: ENSG00000236635Ensembl transcript IDs: ENST00000455554.2, ENST00000653622.1
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCTGCTGACTTTCCCAGAAGTGGCAACATCTCAAATTTCAGAATGTaGGCATATACTAAGGCAAAAATGCATGTTAATACTGATAGACCA | + |
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Preference number: 5 (lower is better) Translates to: SADFPRSGNISNFRM*AYTKAKMHVNTDRP Trigger: TGGTCTATCAGTATTAACATGCATTTTTGCCTTAGTATATGCCCACATTCTGAAATTTGAGATGTTGCCACTTCTGGGAAAGTCAGCAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653622.1 |
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| CDS GCA 90 bp | AGTATTAAACGTTTCCAGGGTCTAGCCAGTCATATTAATTTCCTTTaGACACATCATAGGGGATGGATTCTCATACTGTATATCAATCAC | + |
|
Preference number: 5 (lower is better) Translates to: SIKRFQGLASHINFL*THHRGWILILYINH Trigger: GTGATTGATATACAGTATGAGAATCCATCCCCTATGATGTGTGCAAAGGAAATTAATATGACTGGCTAGACCCTGGAAACGTTTAATACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000455554.2 ENST00000653622.1 |
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| CDS TCA 72 bp | TTCCTAGAGTGGACTCATTTCCATTTGTCTCTGCAGTaGGTACTTCCAGAACTTTTGGGCTGCCTGCGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: FLEWTHFHLSLQ*VLPELLGCLRA Trigger: AGCTCGCAGGCAGCCCAAAAGTTCTGGAAGTACTCACTGCAGAGACAAATGGAAATGAGTCCACTCTAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653622.1 |
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| CDS GCA 72 bp | CGTTTCCAGGGTCTAGCCAGTCATATTAATTTCCTTTaGACACATCATAGGGGATGGATTCTCATACTGTAT | + |
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Preference number: 6 (lower is better) Translates to: RFQGLASHINFL*THHRGWILILY Trigger: ATACAGTATGAGAATCCATCCCCTATGATGTGTGCAAAGGAAATTAATATGACTGGCTAGACCCTGGAAACG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000455554.2 ENST00000653622.1 |
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