Pregenerated sensors for LINC02536 (Homo sapiens)
Ensembl gene IDs: ENSG00000281270Ensembl transcript IDs: ENST00000625429.1, ENST00000625799.1
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AACCTGAAAACACTTTTTGGACATATTCATAGTTTGCTGGAGGGATaGATAGCTTTCCTCTATAGATTAATAGAAGACAAGTCTATACTC | + |
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Preference number: 5 (lower is better) Translates to: NLKTLFGHIHSLLEG*IAFLYRLIEDKSIL Trigger: GAGTATAGACTTGTCTTCTATTAATCTATAGAGGAAAGCTATGCATCCCTCCAGCAAACTATGAATATGTCCAAAAAGTGTTTTCAGGTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000625429.1 ENST00000625799.1 |
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| CDS GCA 72 bp | ACACTTTTTGGACATATTCATAGTTTGCTGGAGGGATaGATAGCTTTCCTCTATAGATTAATAGAAGACAAG | + |
|
Preference number: 6 (lower is better) Translates to: TLFGHIHSLLEG*IAFLYRLIEDK Trigger: CTTGTCTTCTATTAATCTATAGAGGAAAGCTATGCATCCCTCCAGCAAACTATGAATATGTCCAAAAAGTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000625429.1 ENST00000625799.1 |
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| CDS CAA 72 bp | AACAACCTGAAAACACTTTTTGGACATATTCATAGTTaGCTGGAGGGATGCATAGCTTTCCTCTATAGATTA | + |
|
Preference number: 6 (lower is better) Translates to: NNLKTLFGHIHS*LEGCIAFLYRL Trigger: TAATCTATAGAGGAAAGCTATGCATCCCTCCAGCAAACTATGAATATGTCCAAAAAGTGTTTTCAGGTTGTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000625429.1 ENST00000625799.1 |
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| CDS TCA 72 bp | AAATCAAATAATAAAGTAATCCCTCAATATACTTGGTaGATTGGTTCCAGGACCACCCACATATACCAAACT | + |
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Preference number: 6 (lower is better) Translates to: KSNNKVIPQYTW*IGSRTTHIYQT Trigger: AGTTTGGTATATGTGGGTGGTCCTGGAACCAATTCACCAAGTATATTGAGGGATTACTTTATTATTTGATTT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000625429.1 ENST00000625799.1 |
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