Pregenerated sensors for LINC02534 (Homo sapiens)
Ensembl gene IDs: ENSG00000228777Ensembl transcript IDs: ENST00000446525.2, ENST00000666770.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAACTTGTACTGCCTCAAGAAGAGTACTGCAGTACTCAATTAAACTaGTTGCTGGACAACAGAGGAAATGGTTTCCAGTGGATTGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: QLVLPQEEYCSTQLN*LLDNRGNGFQWIAG Trigger: GCCTGCAATCCACTGGAAACCATTTCCTCTGTTGTCCAGCAAGCAGTTTAATTGAGTACTGCAGTACTCTTCTTGAGGCAGTACAAGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000446525.2 ENST00000666770.1 |
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| CDS CCA 90 bp | GTACTGCAGTACTCAATTAAACTGCTTGCTGGACAACAGAGGAAATaGTTTCCAGTGGATTGCAGGCCACTGGAAGAAATAGTAAGACAC | + |
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Preference number: 5 (lower is better) Translates to: VLQYSIKLLAGQQRK*FPVDCRPLEEIVRH Trigger: GTGTCTTACTATTTCTTCCAGTGGCCTGCAATCCACTGGAAACCATTTCCTCTGTTGTCCAGCAAGCAGTTTAATTGAGTACTGCAGTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000446525.2 ENST00000666770.1 |
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| CDS GCA 90 bp | ATTAAACTGCTTGCTGGACAACAGAGGAAATGGTTTCCAGTGGATTaGAGGCCACTGGAAGAAATAGTAAGACACAACTTCATAGCTGTT | + |
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Preference number: 5 (lower is better) Translates to: IKLLAGQQRKWFPVD*RPLEEIVRHNFIAV Trigger: AACAGCTATGAAGTTGTGTCTTACTATTTCTTCCAGTGGCCTGCAATCCACTGGAAACCATTTCCTCTGTTGTCCAGCAAGCAGTTTAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000446525.2 ENST00000666770.1 |
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| CDS GCA 90 bp | TTACTTGAGTTTATTCCCCAACTTGTACTGCCTCAAGAAGAGTACTaGAGTACTCAATTAAACTGCTTGCTGGACAACAGAGGAAATGGT | + |
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Preference number: 5 (lower is better) Translates to: LLEFIPQLVLPQEEY*STQLNCLLDNRGNG Trigger: ACCATTTCCTCTGTTGTCCAGCAAGCAGTTTAATTGAGTACTGCAGTACTCTTCTTGAGGCAGTACAAGTTGGGGAATAAACTCAAGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000446525.2 ENST00000666770.1 |
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| CDS CAA 90 bp | CTTGTACTGCCTCAAGAAGAGTACTGCAGTACTCAATTAAACTGCTaGCTGGACAACAGAGGAAATGGTTTCCAGTGGATTGCAGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: LVLPQEEYCSTQLNC*LDNRGNGFQWIAGH Trigger: GTGGCCTGCAATCCACTGGAAACCATTTCCTCTGTTGTCCAGCAAGCAGTTTAATTGAGTACTGCAGTACTCTTCTTGAGGCAGTACAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000446525.2 ENST00000666770.1 |
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| CDS CAA 72 bp | GCAAAAGTATGCTCCATTTCTGTGGTCCTCTCCCTCTaGGAGTTTATAGTAGGTTTTGGTCTACAGTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: AKVCSISVVLSL*EFIVGFGLQFL Trigger: CAGGAACTGTAGACCAAAACCTACTATAAACTCCAAGAGGGAGAGGACCACAGAAATGGAGCATACTTTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000446525.2 |
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| CDS CAA 72 bp | CAGGACATGACCCCTTACTTGAGTTTATTCCCCAACTaGTACTGCCTCAAGAAGAGTACTGCAGTACTCAAT | + |
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Preference number: 6 (lower is better) Translates to: QDMTPYLSLFPN*YCLKKSTAVLN Trigger: ATTGAGTACTGCAGTACTCTTCTTGAGGCAGTACAAGTTGGGGAATAAACTCAAGTAAGGGGTCATGTCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000446525.2 ENST00000666770.1 |
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| CDS GCA 72 bp | GCCTATCCACAAATATTAACTGCTGCATCCTTTAGTTaGAAGGGCCTGCATGGTCTGGTCATTCTTATCTTA | + |
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Preference number: 6 (lower is better) Translates to: AYPQILTAASFS*KGLHGLVILIL Trigger: TAAGATAAGAATGACCAGACCATGCAGGCCCTTGCAACTAAAGGATGCAGCAGTTAATATTTGTGGATAGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000446525.2 |
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| CDS CCA 72 bp | TACTCAATTAAACTGCTTGCTGGACAACAGAGGAAATaGTTTCCAGTGGATTGCAGGCCACTGGAAGAAATA | + |
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Preference number: 6 (lower is better) Translates to: YSIKLLAGQQRK*FPVDCRPLEEI Trigger: TATTTCTTCCAGTGGCCTGCAATCCACTGGAAACCATTTCCTCTGTTGTCCAGCAAGCAGTTTAATTGAGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000446525.2 ENST00000666770.1 |
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| CDS CAA 72 bp | CCTCAAGAAGAGTACTGCAGTACTCAATTAAACTGCTaGCTGGACAACAGAGGAAATGGTTTCCAGTGGATT | + |
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Preference number: 6 (lower is better) Translates to: PQEEYCSTQLNC*LDNRGNGFQWI Trigger: AATCCACTGGAAACCATTTCCTCTGTTGTCCAGCAAGCAGTTTAATTGAGTACTGCAGTACTCTTCTTGAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000446525.2 ENST00000666770.1 |
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| CDS GCA 72 bp | TTTATTCCCCAACTTGTACTGCCTCAAGAAGAGTACTaGAGTACTCAATTAAACTGCTTGCTGGACAACAGA | + |
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Preference number: 6 (lower is better) Translates to: FIPQLVLPQEEY*STQLNCLLDNR Trigger: TCTGTTGTCCAGCAAGCAGTTTAATTGAGTACTGCAGTACTCTTCTTGAGGCAGTACAAGTTGGGGAATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000446525.2 ENST00000666770.1 |
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| CDS CAA 72 bp | TGCAAACCAGTATTTCCACTCAATATTTGTAAGGTTTaGGTCTACAGTTCCTGGCTCATAATTCCCAAAGCC | + |
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Preference number: 6 (lower is better) Translates to: CKPVFPLNICKV*VYSSWLIIPKA Trigger: GGCTTTGGGAATTATGAGCCAGGAACTGTAGACCAAAACCTTACAAATATTGAGTGGAAATACTGGTTTGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666770.1 |
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| CDS CCA 72 bp | ATGGTCTGGTCATTCTTATCTTATTACAAACCCCACTaGGCTAAGGTATTGAAGACCTGTGTTAAAATGCAA | + |
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Preference number: 6 (lower is better) Translates to: MVWSFLSYYKPH*AKVLKTCVKMQ Trigger: TTGCATTTTAACACAGGTCTTCAATACCTTAGCCCAGTGGGGTTTGTAATAAGATAAGAATGACCAGACCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000446525.2 |
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| CDS CCA 72 bp | CCACTCAATATTTGTAAGGTTTTGGTCTACAGTTCCTaGCTCATAATTCCCAAAGCCCTTGTTATAGTAAAC | + |
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Preference number: 6 (lower is better) Translates to: PLNICKVLVYSS*LIIPKALVIVN Trigger: GTTTACTATAACAAGGGCTTTGGGAATTATGAGCCAGGAACTGTAGACCAAAACCTTACAAATATTGAGTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666770.1 |
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