RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC02531 (Homo sapiens)

Ensembl gene IDs: ENSG00000220908

Ensembl transcript IDs: ENST00000404689.2

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GGCCCTCGCTCCTTCTCAGCGCCTCCTCGGCCTCGGCGTCCGCTCTaGTCAGGCTTGAGGAGCCCTTCAGCCCGCCGCTGCACTGTGGGA +
Preference number: 5 (lower is better)
Translates to: GPRSFSAPPRPRRPL*SGLRSPSARRCTVG
Trigger: TCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAAGCCTGACCAGAGCGGACGCCGAGGCCGAGGAGGCGCTGAGAAGGAGCGAGGGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS GCA 90 bp CGGCGTCCGCTCTGGTCAGGCTTGAGGAGCCCTTCAGCCCGCCGCTaGACTGTGGGACGCCCCTCTCTGGGCTGGCCAAGGTTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: RRPLWSGLRSPSARR*TVGRPSLGWPRLEL
Trigger: CAGCTCCAACCTTGGCCAGCCCAGAGAGGGGCGTCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAAGCCTGACCAGAGCGGACGCCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS CCA 90 bp AGCCCTTCAGCCCGCCGCTGCACTGTGGGACGCCCCTCTCTGGGCTaGCCAAGGTTGGAGCTGGCCCCCTCTGCTTACGTGGAGGTGTGG +
Preference number: 5 (lower is better)
Translates to: SPSARRCTVGRPSLG*PRLELAPSAYVEVW
Trigger: CCACACCTCCACGTAAGCAGAGGGGGCCAGCTCCAACCTTGGCCAGCCCAGAGAGGGGCGTCCCACAGTGCAGCGGCGGGCTGAAGGGCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS TCA 90 bp CTGATTTCCAGGGTTAATGTCAAGGCTGTAGTCGTTCTGAACTCTTaGGAGGTGACAACGTGCTGGCGGCCCTCGCTCCTTCTCAGCGCC +
Preference number: 5 (lower is better)
Translates to: LISRVNVKAVVVLNS*EVTTCWRPSLLLSA
Trigger: GGCGCTGAGAAGGAGCGAGGGCCGCCAGCACGTTGTCACCTCTCAAGAGTTCAGAACGACTACAGCCTTGACATTAACCCTGGAAATCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS CCA 72 bp CAGCGTTCGCGGGCCAGCGTGAGTTCCGGGTGGGCGTaGGGCTCCGCGCCCCGCACTCACTCGGAGCCGCCC +
Preference number: 6 (lower is better)
Translates to: QRSRASVSSGWA*GSAPRTHSEPP
Trigger: GGGCGGCTCCGAGTGAGTGCGGGGCGCGGAGCCCCACGCCCACCCGGAACTCACGCTGGCCCGCGAACGCTG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS CCA 72 bp TGCGCGCAGCGTTCGCGGGCCAGCGTGAGTTCCGGGTaGGCGTGGGGCTCCGCGCCCCGCACTCACTCGGAG +
Preference number: 6 (lower is better)
Translates to: CAQRSRASVSSG*AWGSAPRTHSE
Trigger: CTCCGAGTGAGTGCGGGGCGCGGAGCCCCACGCCCACCCGGAACTCACGCTGGCCCGCGAACGCTGCGCGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS GCA 72 bp AGGGGGCGCCCGGTCCCCCAGCACTGCCGTCCCTCGTaGGCAGTGCTCGAATTCTCGCTGGGCCTCAGCCGC +
Preference number: 6 (lower is better)
Translates to: RGRPVPQHCRPS*AVLEFSLGLSR
Trigger: GCGGCTGAGGCCCAGCGAGAATTCGAGCACTGCGCACGAGGGACGGCAGTGCTGGGGGACCGGGCGCCCCCT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS TCA 72 bp CGCCTCCTCGGCCTCGGCGTCCGCTCTGGTCAGGCTTaGGGAGCCCTTCAGCCCGCCGCTGCACTGTGGGAC +
Preference number: 6 (lower is better)
Translates to: RLLGLGVRSGQA*GALQPAAALWD
Trigger: GTCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAAGCCTGACCAGAGCGGACGCCGAGGCCGAGGAGGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS GCA 72 bp GCCCGGTCCCCCAGCACTGCCGTCCCTCGTGCGCAGTaGTCGAATTCTCGCTGGGCCTCAGCCGCCTCCCCA +
Preference number: 6 (lower is better)
Translates to: ARSPSTAVPRAQ*SNSRWASAASP
Trigger: TGGGGAGGCGGCTGAGGCCCAGCGAGAATTCGAGCACTGCGCACGAGGGACGGCAGTGCTGGGGGACCGGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS GCA 72 bp CAGCAGCTGCGGAGGGGGCGCCCGGTCCCCCAGCACTaGCGTCCCTCGTGCGCAGTGCTCGAATTCTCGCTG +
Preference number: 6 (lower is better)
Translates to: QQLRRGRPVPQH*RPSCAVLEFSL
Trigger: CAGCGAGAATTCGAGCACTGCGCACGAGGGACGGCAGTGCTGGGGGACCGGGCGCCCCCTCCGCAGCTGCTG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS GCA 72 bp AGGTGTGGAGGCAGAGACGCAGGCGGGAACTGGGGCTaGGCGCAGCGTTCGCGGGCCAGCGTGAGTTCCGGG +
Preference number: 6 (lower is better)
Translates to: RCGGRDAGGNWG*AQRSRASVSSG
Trigger: CCCGGAACTCACGCTGGCCCGCGAACGCTGCGCGCAGCCCCAGTTCCCGCCTGCGTCTCTGCCTCCACACCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS CAA 72 bp GCGCCTCCTCGGCCTCGGCGTCCGCTCTGGTCAGGCTaGAGGAGCCCTTCAGCCCGCCGCTGCACTGTGGGA +
Preference number: 6 (lower is better)
Translates to: APPRPRRPLWSG*RSPSARRCTVG
Trigger: TCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAAGCCTGACCAGAGCGGACGCCGAGGCCGAGGAGGCGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS CCA 72 bp ACGTGGAGGTGTGGAGGCAGAGACGCAGGCGGGAACTaGGGCTGCGCGCAGCGTTCGCGGGCCAGCGTGAGT +
Preference number: 6 (lower is better)
Translates to: TWRCGGRDAGGN*GCAQRSRASVS
Trigger: ACTCACGCTGGCCCGCGAACGCTGCGCGCAGCCCCAGTTCCCGCCTGCGTCTCTGCCTCCACACCTCCACGT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS CCA 72 bp TCCTTCTCAGCGCCTCCTCGGCCTCGGCGTCCGCTCTaGTCAGGCTTGAGGAGCCCTTCAGCCCGCCGCTGC +
Preference number: 6 (lower is better)
Translates to: SFSAPPRPRRPL*SGLRSPSARRC
Trigger: GCAGCGGCGGGCTGAAGGGCTCCTCAAGCCTGACCAGAGCGGACGCCGAGGCCGAGGAGGCGCTGAGAAGGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS GCA 72 bp CTCTGGTCAGGCTTGAGGAGCCCTTCAGCCCGCCGCTaGACTGTGGGACGCCCCTCTCTGGGCTGGCCAAGG +
Preference number: 6 (lower is better)
Translates to: LWSGLRSPSARR*TVGRPSLGWPR
Trigger: CCTTGGCCAGCCCAGAGAGGGGCGTCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAAGCCTGACCAGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS GCA 72 bp CTCTCTGGGCTGGCCAAGGTTGGAGCTGGCCCCCTCTaGTTACGTGGAGGTGTGGAGGCAGAGACGCAGGCG +
Preference number: 6 (lower is better)
Translates to: LSGLAKVGAGPL*LRGGVEAETQA
Trigger: CGCCTGCGTCTCTGCCTCCACACCTCCACGTAAGCAGAGGGGGCCAGCTCCAACCTTGGCCAGCCCAGAGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS CCA 72 bp GCTGGCCAAGGTTGGAGCTGGCCCCCTCTGCTTACGTaGAGGTGTGGAGGCAGAGACGCAGGCGGGAACTGG +
Preference number: 6 (lower is better)
Translates to: AGQGWSWPPLLT*RCGGRDAGGNW
Trigger: CCAGTTCCCGCCTGCGTCTCTGCCTCCACACCTCCACGTAAGCAGAGGGGGCCAGCTCCAACCTTGGCCAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS CCA 72 bp TGGGACGCCCCTCTCTGGGCTGGCCAAGGTTGGAGCTaGCCCCCTCTGCTTACGTGGAGGTGTGGAGGCAGA +
Preference number: 6 (lower is better)
Translates to: WDAPLWAGQGWS*PPLLTWRCGGR
Trigger: TCTGCCTCCACACCTCCACGTAAGCAGAGGGGGCCAGCTCCAACCTTGGCCAGCCCAGAGAGGGGCGTCCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS CCA 72 bp GCACTGTGGGACGCCCCTCTCTGGGCTGGCCAAGGTTaGAGCTGGCCCCCTCTGCTTACGTGGAGGTGTGGA +
Preference number: 6 (lower is better)
Translates to: ALWDAPLWAGQG*SWPPLLTWRCG
Trigger: TCCACACCTCCACGTAAGCAGAGGGGGCCAGCTCCAACCTTGGCCAGCCCAGAGAGGGGCGTCCCACAGTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS CAA 72 bp TGCACTGTGGGACGCCCCTCTCTGGGCTGGCCAAGGTaGGAGCTGGCCCCCTCTGCTTACGTGGAGGTGTGG +
Preference number: 6 (lower is better)
Translates to: CTVGRPSLGWPR*ELAPSAYVEVW
Trigger: CCACACCTCCACGTAAGCAGAGGGGGCCAGCTCCAACCTTGGCCAGCCCAGAGAGGGGCGTCCCACAGTGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000404689.2
CDS TCA 72 bp AGGGTTAATGTCAAGGCTGTAGTCGTTCTGAACTCTTaGGAGGTGACAACGTGCTGGCGGCCCTCGCTCCTT +
Preference number: 6 (lower is better)
Translates to: RVNVKAVVVLNS*EVTTCWRPSLL
Trigger: AAGGAGCGAGGGCCGCCAGCACGTTGTCACCTCTCAAGAGTTCAGAACGACTACAGCCTTGACATTAACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000404689.2