Pregenerated sensors for LINC02517 (Homo sapiens)
Ensembl gene IDs: ENSG00000249145Ensembl transcript IDs: ENST00000503186.2, ENST00000509453.1, ENST00000646635.1, ENST00000653648.1, ENST00000657733.1, ENST00000657851.1, ENST00000658537.1, ENST00000660291.1, ENST00000661538.1, ENST00000661956.1, ENST00000671202.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGCCCAGAAGGAAGGGATGCCTTTGTAGAGCGTAGTGGGGCAAAGTaGCCAGCATTCCAGAGTGGAGCCATGGTGGGGCCTGCCCAAGGG | + |
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Preference number: 5 (lower is better) Translates to: CPEGRDAFVERSGAK*PAFQSGAMVGPAQG Trigger: CCCTTGGGCAGGCCCCACCATGGCTCCACTCTGGAATGCTGGGCACTTTGCCCCACTACGCTCTACAAAGGCATCCCTTCCTTCTGGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000646635.1 ENST00000658537.1 ENST00000661956.1 |
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| CDS CCA 90 bp | TCACGCCATTGCACTCCAGCCTGCTTGAGTCAGAAGATGCCTTCATaGCCAGAGTGTCTGCTGAGCCCGGTGCCACTCGGGGAGAGAAAA | + |
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Preference number: 5 (lower is better) Translates to: SRHCTPACLSQKMPS*PECLLSPVPLGERK Trigger: TTTTCTCTCCCCGAGTGGCACCGGGCTCAGCAGACACTCTGGCCATGAAGGCATCTTCTGACTCAAGCAGGCTGGAGTGCAATGGCGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000503186.2 ENST00000653648.1 ENST00000660291.1 |
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| CDS CCA 90 bp | GCACTCCAGCCTGAGTTCACAGAGCTGGGGGTAGCAGAGACAAGGTaGGAACCCAGGCAGGTTCGAGCTTTCACTAAGCACCAAGGTAAG | + |
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Preference number: 5 (lower is better) Translates to: ALQPEFTELGVAETR*EPRQVRAFTKHQGK Trigger: CTTACCTTGGTGCTTAGTGAAAGCTCGAACCTGCCTGGGTTCCCACCTTGTCTCTGCTACCCCCAGCTCTGTGAACTCAGGCTGGAGTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000657851.1 ENST00000671202.1 |
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| CDS CCA 90 bp | GGAGATCATCCTGCAGAGAAGCTCAGTTCAGGCTGGCCTGAGATCTaGGCCCCTCTGTGTTTTATATCTGCCCAGAAGGAAGGGATGCCT | + |
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Preference number: 5 (lower is better) Translates to: GDHPAEKLSSGWPEI*APLCFISAQKEGMP Trigger: AGGCATCCCTTCCTTCTGGGCAGATATAAAACACAGAGGGGCCCAGATCTCAGGCCAGCCTGAACTGAGCTTCTCTGCAGGATGATCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000646635.1 |
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| CDS CCA 90 bp | GGAGATCATCCTGCAGAGAAGCTCAGTTCAGGCTGGCCTGAGATCTaGGCCCCTCTGTGTTTTATATCTGCAGAGATGGAACACCTGCCC | + |
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Preference number: 5 (lower is better) Translates to: GDHPAEKLSSGWPEI*APLCFISAEMEHLP Trigger: GGGCAGGTGTTCCATCTCTGCAGATATAAAACACAGAGGGGCCCAGATCTCAGGCCAGCCTGAACTGAGCTTCTCTGCAGGATGATCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000658537.1 ENST00000661956.1 |
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| CDS TCA 90 bp | GACAGGCTGAGGCAGATGAGTTTAGCAGCAGAGACTTTTCATAACTaGCTGGATGGGGCCCAGGAGTGTCACCAAGGCTGGCTTCACACA | + |
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Preference number: 5 (lower is better) Translates to: DRLRQMSLAAETFHN*LDGAQECHQGWLHT Trigger: TGTGTGAAGCCAGCCTTGGTGACACTCCTGGGCCCCATCCAGTCAGTTATGAAAAGTCTCTGCTGCTAAACTCATCTGCCTCAGCCTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000646635.1 ENST00000658537.1 ENST00000661956.1 |
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| CDS CCA 72 bp | GTGGGGCAAAGTGCCCAGCATTCCAGAGTGGAGCCATaGTGGGGCCTGCCCAAGGGTCTTCCTGCCAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: VGQSAQHSRVEP*WGLPKGLPARA Trigger: TGCCCTGGCAGGAAGACCCTTGGGCAGGCCCCACCATGGCTCCACTCTGGAATGCTGGGCACTTTGCCCCAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000646635.1 ENST00000658537.1 ENST00000661956.1 |
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| CDS CCA 72 bp | GGGCAAAGTGCCCAGCATTCCAGAGTGGAGCCATGGTaGGGCCTGCCCAAGGGTCTTCCTGCCAGGGCAAGT | + |
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Preference number: 6 (lower is better) Translates to: GQSAQHSRVEPW*GLPKGLPARAS Trigger: ACTTGCCCTGGCAGGAAGACCCTTGGGCAGGCCCCACCATGGCTCCACTCTGGAATGCTGGGCACTTTGCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000646635.1 ENST00000658537.1 ENST00000661956.1 |
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| CDS CCA 72 bp | TGCACTCCAGCCTGCTTGAGTCAGAAGATGCCTTCATaGCCAGAGTGTCTGCTGAGCCCGGTGCCACTCGGG | + |
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Preference number: 6 (lower is better) Translates to: CTPACLSQKMPS*PECLLSPVPLG Trigger: CCCGAGTGGCACCGGGCTCAGCAGACACTCTGGCCATGAAGGCATCTTCTGACTCAAGCAGGCTGGAGTGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000503186.2 ENST00000653648.1 ENST00000660291.1 |
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| CDS GCA 72 bp | GGAAGGGATGCCTTTGTAGAGCGTAGTGGGGCAAAGTaGCCAGCATTCCAGAGTGGAGCCATGGTGGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: GRDAFVERSGAK*PAFQSGAMVGP Trigger: AGGCCCCACCATGGCTCCACTCTGGAATGCTGGGCACTTTGCCCCACTACGCTCTACAAAGGCATCCCTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000646635.1 ENST00000658537.1 ENST00000661956.1 |
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| CDS TCA 72 bp | CGAGCAGCCCTCATAGTCTCAGCCATGACCCCATCCTaGGTCTCAAACCTTCAGCTGGCCAAGCAGGATGGC | + |
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Preference number: 6 (lower is better) Translates to: RAALIVSAMTPS*VSNLQLAKQDG Trigger: GCCATCCTGCTTGGCCAGCTGAAGGTTTGAGACTCAGGATGGGGTCATGGCTGAGACTATGAGGGCTGCTCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000646635.1 ENST00000660291.1 ENST00000661538.1 ENST00000661956.1 ENST00000671202.1 |
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| CDS CCA 72 bp | GCTGAGTTCACAGAGCTGGGGGTAGCAGAGACAAGGTaGGAACCCAGGCAGGTTCGAGCTTTCACTAAGCAC | + |
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Preference number: 6 (lower is better) Translates to: AEFTELGVAETR*EPRQVRAFTKH Trigger: GTGCTTAGTGAAAGCTCGAACCTGCCTGGGTTCCCACCTTGTCTCTGCTACCCCCAGCTCTGTGAACTCAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000646635.1 |
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| CDS CCA 72 bp | CCTGAGTTCACAGAGCTGGGGGTAGCAGAGACAAGGTaGGAACCCAGGCAGGTTCGAGCTTTCACTAAGCAC | + |
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Preference number: 6 (lower is better) Translates to: PEFTELGVAETR*EPRQVRAFTKH Trigger: GTGCTTAGTGAAAGCTCGAACCTGCCTGGGTTCCCACCTTGTCTCTGCTACCCCCAGCTCTGTGAACTCAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000657851.1 ENST00000671202.1 |
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| CDS TCA 72 bp | GGGCATTTTGGACCCCTGTGTTTCTGGAGGTGCATCTaGACAAGACTGGGCAGTTTGGGAGGCTGCTACAGG | + |
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Preference number: 6 (lower is better) Translates to: GHFGPLCFWRCI*TRLGSLGGCYR Trigger: CCTGTAGCAGCCTCCCAAACTGCCCAGTCTTGTTCAGATGCACCTCCAGAAACACAGGGGTCCAAAATGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 8 transcripts: ENST00000503186.2 ENST00000509453.1 ENST00000653648.1 ENST00000657733.1 ENST00000657851.1 ENST00000660291.1 ENST00000661538.1 ENST00000671202.1 |
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| CDS CCA 72 bp | TCCTGGTCTGTTGATGGAGACAGGCACGTAAACCGATaGCAGGAGAGGAACAAGGAGGCATACCCTGTGGAC | + |
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Preference number: 6 (lower is better) Translates to: SWSVDGDRHVNR*QERNKEAYPVD Trigger: GTCCACAGGGTATGCCTCCTTGTTCCTCTCCTGCCATCGGTTTACGTGCCTGTCTCCATCAACAGACCAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 9 transcripts: ENST00000503186.2 ENST00000509453.1 ENST00000646635.1 ENST00000653648.1 ENST00000657733.1 ENST00000657851.1 ENST00000661538.1 ENST00000661956.1 ENST00000671202.1 |
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| CDS CCA 72 bp | TCTGAGTTCACAGAGCTGGGGGTAGCAGAGACAAGGTaGGAACCCAGGCAGGTTCGAGCTTTCACTAAGCAC | + |
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Preference number: 6 (lower is better) Translates to: SEFTELGVAETR*EPRQVRAFTKH Trigger: GTGCTTAGTGAAAGCTCGAACCTGCCTGGGTTCCCACCTTGTCTCTGCTACCCCCAGCTCTGTGAACTCAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENST00000503186.2 ENST00000509453.1 ENST00000653648.1 ENST00000657733.1 ENST00000660291.1 ENST00000661538.1 ENST00000661956.1 |
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| CDS CCA 72 bp | CCTGCAGAGAAGCTCAGTTCAGGCTGGCCTGAGATCTaGGCCCCTCTGTGTTTTATATCTGCCCAGAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: PAEKLSSGWPEI*APLCFISAQKE Trigger: TTCCTTCTGGGCAGATATAAAACACAGAGGGGCCCAGATCTCAGGCCAGCCTGAACTGAGCTTCTCTGCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000646635.1 |
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| CDS CCA 72 bp | CCTGCAGAGAAGCTCAGTTCAGGCTGGCCTGAGATCTaGGCCCCTCTGTGTTTTATATCTGCAGAGATGGAA | + |
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Preference number: 6 (lower is better) Translates to: PAEKLSSGWPEI*APLCFISAEME Trigger: TTCCATCTCTGCAGATATAAAACACAGAGGGGCCCAGATCTCAGGCCAGCCTGAACTGAGCTTCTCTGCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000658537.1 ENST00000661956.1 |
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