Pregenerated sensors for LINC02516 (Homo sapiens)
Ensembl gene IDs: ENSG00000261083Ensembl transcript IDs: ENST00000563724.1, ENST00000651887.1, ENST00000659179.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TATCAAGGGCAAGAAGAACTCTCGAGGCATCTGACGGCCAGAAAGTaGACAGGAGCAGTGACAGCACCCCTTGGTAAGATGGTTGTTGCA | + |
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Preference number: 5 (lower is better) Translates to: YQGQEELSRHLTARK*TGAVTAPLGKMVVA Trigger: TGCAACAACCATCTTACCAAGGGGTGCTGTCACTGCTCCTGTCCACTTTCTGGCCGTCAGATGCCTCGAGAGTTCTTCTTGCCCTTGATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563724.1 ENST00000651887.1 |
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| CDS GCA 90 bp | CGAGAAAGATTGCATAATGACCTTCTTACTCCTCTTGCCTTGCCTTaGTTTGCACTCTCTCTCTCTCTCTGTCTCTGTGTGTGTGTGTCT | + |
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Preference number: 5 (lower is better) Translates to: RERLHNDLLTPLALP*FALSLSLCLCVCVS Trigger: AGACACACACACACAGAGACAGAGAGAGAGAGAGAGTGCAAAGCAAGGCAAGGCAAGAGGAGTAAGAAGGTCATTATGCAATCTTTCTCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000563724.1 ENST00000651887.1 ENST00000659179.1 |
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| CDS TCA 90 bp | AGGATAATAGTTCAGGCAGAATTTCATCTCTTTTGCTGTGGCTCTTaGAAGTGTCTTAGGAGCTCCCAGGAGTACACAGATGGTACTTTG | + |
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Preference number: 5 (lower is better) Translates to: RIIVQAEFHLFCCGS*KCLRSSQEYTDGTL Trigger: CAAAGTACCATCTGTGTACTCCTGGGAGCTCCTAAGACACTTTCAAGAGCCACAGCAAAAGAGATGAAATTCTGCCTGAACTATTATCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000563724.1 ENST00000651887.1 ENST00000659179.1 |
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| CDS GCA 90 bp | GGACTAATGGAGACTTCCAGTATTAAACCTGAGGTATATACACAGTaGTGTTCCAGACCAGAAGTCAGCAAGTATTTTCTGTTCAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: GLMETSSIKPEVYTQ*CSRPEVSKYFLFRA Trigger: GGCTCTGAACAGAAAATACTTGCTGACTTCTGGTCTGGAACAGCACTGTGTATATACCTCAGGTTTAATACTGGAAGTCTCCATTAGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563724.1 ENST00000651887.1 |
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| CDS CCA 90 bp | CTAAAGTGCCTCATTTTCCAGGGCCTCAGTTTACTTAACTGTAAATaGAGGATAATAGTTCAGGCAGAATTTCATCTCTTTTGCTGTGGC | + |
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Preference number: 5 (lower is better) Translates to: LKCLIFQGLSLLNCK*RIIVQAEFHLFCCG Trigger: GCCACAGCAAAAGAGATGAAATTCTGCCTGAACTATTATCCTCCATTTACAGTTAAGTAAACTGAGGCCCTGGAAAATGAGGCACTTTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000563724.1 ENST00000651887.1 ENST00000659179.1 |
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| CDS CCA 72 bp | CAAGAAGAACTCTCGAGGCATCTGACGGCCAGAAAGTaGACAGGAGCAGTGACAGCACCCCTTGGTAAGATG | + |
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Preference number: 6 (lower is better) Translates to: QEELSRHLTARK*TGAVTAPLGKM Trigger: CATCTTACCAAGGGGTGCTGTCACTGCTCCTGTCCACTTTCTGGCCGTCAGATGCCTCGAGAGTTCTTCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563724.1 ENST00000651887.1 |
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| CDS CAA 90 bp | AAAGATTGCATAATGACCTTCTTACTCCTCTTGCCTTGCCTTGCTTaGCACTCTCTCTCTCTCTCTGTCTCTGTGTGTGTGTGTCTCGTC | + |
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Preference number: 6 (lower is better) Translates to: KDCIMTFLLLLPCLA*HSLSLSVSVCVCLV Trigger: GACGAGACACACACACACAGAGACAGAGAGAGAGAGAGAGTGCAAAGCAAGGCAAGGCAAGAGGAGTAAGAAGGTCATTATGCAATCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000563724.1 ENST00000651887.1 ENST00000659179.1 |
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| CDS CAA 72 bp | ATAATGACCTTCTTACTCCTCTTGCCTTGCCTTGCTTaGCACTCTCTCTCTCTCTCTGTCTCTGTGTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: IMTFLLLLPCLA*HSLSLSVSVCV Trigger: CACACACACAGAGACAGAGAGAGAGAGAGAGTGCAAAGCAAGGCAAGGCAAGAGGAGTAAGAAGGTCATTAT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000563724.1 ENST00000651887.1 ENST00000659179.1 |
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| CDS CAA 72 bp | GAAAGATTGCATAATGACCTTCTTACTCCTCTTGCCTaGCCTTGCTTTGCACTCTCTCTCTCTCTCTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: ERLHNDLLTPLA*PCFALSLSLCL Trigger: GAGACAGAGAGAGAGAGAGAGTGCAAAGCAAGGCAAGGCAAGAGGAGTAAGAAGGTCATTATGCAATCTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000563724.1 ENST00000651887.1 ENST00000659179.1 |
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| CDS GCA 72 bp | GAGACTTCCAGTATTAAACCTGAGGTATATACACAGTaGTGTTCCAGACCAGAAGTCAGCAAGTATTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: ETSSIKPEVYTQ*CSRPEVSKYFL Trigger: CAGAAAATACTTGCTGACTTCTGGTCTGGAACAGCACTGTGTATATACCTCAGGTTTAATACTGGAAGTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563724.1 ENST00000651887.1 |
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| CDS CCA 72 bp | GTCTTCTGGATAGTTGGTAATGTCCCTAGCAAAATGTaGAGTCCAGAACTGAAACTGACACACTTTTATTCC | + |
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Preference number: 6 (lower is better) Translates to: VFWIVGNVPSKM*SPELKLTHFYS Trigger: GGAATAAAAGTGTGTCAGTTTCAGTTCTGGACTCCACATTTTGCTAGGGACATTACCAACTATCCAGAAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000563724.1 ENST00000651887.1 |
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| CDS CCA 72 bp | TTTTGCAGTCCCTTTACATTTCCCATCTCTGTCTTCTaGATAGTTGGTAATGTCCCTAGCAAAATGTGGAGT | + |
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Preference number: 6 (lower is better) Translates to: FCSPFTFPISVF*IVGNVPSKMWS Trigger: ACTCCACATTTTGCTAGGGACATTACCAACTATCCAGAAGACAGAGATGGGAAATGTAAAGGGACTGCAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000563724.1 ENST00000651887.1 |
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| CDS CCA 72 bp | CCCAGTTTGACAATGCCTGTTCTAGACTGTTCTGTATaGAAGGAGTTTCATAGTGCTACTGATGAAGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: PSLTMPVLDCSV*KEFHSATDEVS Trigger: AGAAACTTCATCAGTAGCACTATGAAACTCCTTCCATACAGAACAGTCTAGAACAGGCATTGTCAAACTGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000563724.1 ENST00000651887.1 |
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| CDS TCA 72 bp | ATGGTCAATCTCTGCCACAGACAATACAGAAATGAATaGACGTGGTTGTGTTCCAACAACATTTTCTTTAGA | + |
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Preference number: 6 (lower is better) Translates to: MVNLCHRQYRNE*TWLCSNNIFFR Trigger: TCTAAAGAAAATGTTGTTGGAACACAACCACGTTCATTCATTTCTGTATTGTCTGTGGCAGAGATTGACCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000563724.1 ENST00000651887.1 |
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| CDS TCA 72 bp | ATGTTTCCTGTGAAGTATTGCGTAGGATCAAAATCATaGAGTCATTCAATAGACAAAGTCTGTTACCTGACA | + |
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Preference number: 6 (lower is better) Translates to: MFPVKYCVGSKS*SHSIDKVCYLT Trigger: TGTCAGGTAACAGACTTTGTCTATTGAATGACTTCATGATTTTGATCCTACGCAATACTTCACAGGAAACAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659179.1 |
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| CDS CCA 72 bp | TTCTTCAACAAATATTGCAAAGCAGTTCACTTAAGATaGCCACCTAGTAAATTGCCACATTTCCAATTTAGT | + |
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Preference number: 6 (lower is better) Translates to: FFNKYCKAVHLR*PPSKLPHFQFS Trigger: ACTAAATTGGAAATGTGGCAATTTACTAGGTGGCCATCTTAAGTGAACTGCTTTGCAATATTTGTTGAAGAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659179.1 |
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