Pregenerated sensors for LINC02501 (Homo sapiens)
Ensembl gene IDs: ENSG00000249882Ensembl transcript IDs: ENST00000510420.2, ENST00000655959.1, ENST00000658339.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCAGGTCCTCCCTCTTTCAAGCTGGTCTCTCATCAGTTAGCAGTGTaGCTTGGCTTCAGGGACTTTCGGCAAAGGTCCATTCAAATTGGT | + |
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Preference number: 5 (lower is better) Translates to: AGPPSFKLVSHQLAV*LGFRDFRQRSIQIG Trigger: ACCAATTTGAATGGACCTTTGCCGAAAGTCCCTGAAGCCAAGCCACACTGCTAACTGATGAGAGACCAGCTTGAAAGAGGGAGGACCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655959.1 |
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| CDS CCA 90 bp | GTGCCACTTCCATTTCCACCCCTTGATTCCTGGACTCCTGAATCTTaGCTATGGGAGAAACAGTACCATATATCGGCCACTGATTCAGAG | + |
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Preference number: 5 (lower is better) Translates to: VPLPFPPLDSWTPES*LWEKQYHISATDSE Trigger: CTCTGAATCAGTGGCCGATATATGGTACTGTTTCTCCCATAGCCAAGATTCAGGAGTCCAGGAATCAAGGGGTGGAAATGGAAGTGGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000510420.2 ENST00000655959.1 ENST00000658339.1 |
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| CDS TCA 90 bp | GTAGGAGAAGCCCAAAGTGTCCAAGTGGCAATCTTAACTTCTAATTaGATGGAATCGTTGTTGTGTCTCCTGGCGGCAGTGTTTCTCCCT | + |
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Preference number: 5 (lower is better) Translates to: VGEAQSVQVAILTSN*MESLLCLLAAVFLP Trigger: AGGGAGAAACACTGCCGCCAGGAGACACAACAACGATTCCATTCAATTAGAAGTTAAGATTGCCACTTGGACACTTTGGGCTTCTCCTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000510420.2 ENST00000655959.1 ENST00000658339.1 |
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| CDS TCA 90 bp | GCAGTCTACTGTGACTCAGCAGAAAATGGATGGTTTATGATCACCTaGCTCCCATATATCTGGAGTTGTGCTGATGGCAATTGGCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: AVYCDSAENGWFMIT*LPYIWSCADGNWQV Trigger: GACCTGCCAATTGCCATCAGCACAACTCCAGATATATGGGAGTCAGGTGATCATAAACCATCCATTTTCTGCTGAGTCACAGTAGACTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658339.1 |
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| CDS CCA 90 bp | CTTCCATTTCCACCCCTTGATTCCTGGACTCCTGAATCTTGGCTATaGGAGAAACAGTACCATATATCGGCCACTGATTCAGAGCATACA | + |
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Preference number: 5 (lower is better) Translates to: LPFPPLDSWTPESWL*EKQYHISATDSEHT Trigger: TGTATGCTCTGAATCAGTGGCCGATATATGGTACTGTTTCTCCCATAGCCAAGATTCAGGAGTCCAGGAATCAAGGGGTGGAAATGGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000510420.2 ENST00000655959.1 ENST00000658339.1 |
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| CDS TCA 90 bp | TTTACCGACACCTCCTTGTCTCATTCATGGAGTTGCAGTCTACTGTaGCTCAGCAGAAAATGGATGGTTTATGATCACCTGACTCCCATA | + |
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Preference number: 5 (lower is better) Translates to: FTDTSLSHSWSCSLL*LSRKWMVYDHLTPI Trigger: TATGGGAGTCAGGTGATCATAAACCATCCATTTTCTGCTGAGTCACAGTAGACTGCAACTCCATGAATGAGACAAGGAGGTGTCGGTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658339.1 |
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| CDS TCA 90 bp | ATGGAGTTGCAGTCTACTGTGACTCAGCAGAAAATGGATGGTTTATaGTCACCTGACTCCCATATATCTGGAGTTGTGCTGATGGCAATT | + |
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Preference number: 5 (lower is better) Translates to: MELQSTVTQQKMDGL*SPDSHISGVVLMAI Trigger: AATTGCCATCAGCACAACTCCAGATATATGGGAGTCAGGTGATCATAAACCATCCATTTTCTGCTGAGTCACAGTAGACTGCAACTCCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658339.1 |
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| CDS TCA 90 bp | ATTGTGAGTTTCCTATTTACTTGTCTCAGTTGTGGAGTAGTAGACTaGTTTCATCTTGATAATCTGGGTCAATCGCCCCAGCCAAGTAAC | + |
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Preference number: 5 (lower is better) Translates to: IVSFLFTCLSCGVVD*FHLDNLGQSPQPSN Trigger: GTTACTTGGCTGGGGCGATTGACCCAGATTATCAAGATGAAATCAGTCTACTACTCCACAACTGAGACAAGTAAATAGGAAACTCACAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655959.1 |
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| CDS TCA 72 bp | GAGGTCAGGAGATTGAGACCATCCTGGCTAACACGGTaGAACCCCGTCTCTACTCAGTTGTGGAGTAGTAGA | + |
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Preference number: 6 (lower is better) Translates to: EVRRLRPSWLTR*NPVSTQLWSSR Trigger: TCTACTACTCCACAACTGAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658339.1 |
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| CDS CCA 72 bp | CCCTCTTTCAAGCTGGTCTCTCATCAGTTAGCAGTGTaGCTTGGCTTCAGGGACTTTCGGCAAAGGTCCATT | + |
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Preference number: 6 (lower is better) Translates to: PSFKLVSHQLAV*LGFRDFRQRSI Trigger: AATGGACCTTTGCCGAAAGTCCCTGAAGCCAAGCCACACTGCTAACTGATGAGAGACCAGCTTGAAAGAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655959.1 |
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| CDS TCA 72 bp | AATCGCCCCAGCCAAGTAACTCTCTTCTTAGCCTGTTaGCTTCAAGGTAGGAGAAGCCCAAAGTGTCCAAGT | + |
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Preference number: 6 (lower is better) Translates to: NRPSQVTLFLAC*LQGRRSPKCPS Trigger: ACTTGGACACTTTGGGCTTCTCCTACCTTGAAGTCAACAGGCTAAGAAGAGAGTTACTTGGCTGGGGCGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000510420.2 ENST00000655959.1 ENST00000658339.1 |
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| CDS TCA 72 bp | AAGCATTCTGTGATCCCCGGTTTTTGCCCTAAAGCCTaGCTCCCATATATCTGGAGTTGTGCTGATGGCAAT | + |
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Preference number: 6 (lower is better) Translates to: KHSVIPGFCPKA*LPYIWSCADGN Trigger: ATTGCCATCAGCACAACTCCAGATATATGGGAGTCAGGCTTTAGGGCAAAAACCGGGGATCACAGAATGCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000510420.2 ENST00000655959.1 |
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| CDS TCA 72 bp | GAAACCCCGTCTCTACTCAGTTGTGGAGTAGTAGACTaGTTTCATCTTGATAATCTGGGTCAATCGCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: ETPSLLSCGVVD*FHLDNLGQSPQ Trigger: CTGGGGCGATTGACCCAGATTATCAAGATGAAATCAGTCTACTACTCCACAACTGAGTAGAGACGGGGTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000658339.1 |
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| CDS CCA 72 bp | TTTCAAGCTGGTCTCTCATCAGTTAGCAGTGTGGCTTaGCTTCAGGGACTTTCGGCAAAGGTCCATTCAAAT | + |
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Preference number: 6 (lower is better) Translates to: FQAGLSSVSSVA*LQGLSAKVHSN Trigger: ATTTGAATGGACCTTTGCCGAAAGTCCCTGAAGCCAAGCCACACTGCTAACTGATGAGAGACCAGCTTGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655959.1 |
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| CDS CCA 72 bp | TTTCAAGCTGGTCTCTCATCAGTTAGCAGTGTGGCTTaGCTTCCTCAGTTGTGGAGTAGTAGACTGATTTCA | + |
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Preference number: 6 (lower is better) Translates to: FQAGLSSVSSVA*LPQLWSSRLIS Trigger: TGAAATCAGTCTACTACTCCACAACTGAGGAAGCCAAGCCACACTGCTAACTGATGAGAGACCAGCTTGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000510420.2 |
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| CDS TCA 72 bp | CAGTCTACTGTGACTCAGCAGAAAATGGATGGTTTATaGTCACCTGACTCCCATATATCTGGAGTTGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: QSTVTQQKMDGL*SPDSHISGVVL Trigger: CAGCACAACTCCAGATATATGGGAGTCAGGTGATCATAAACCATCCATTTTCTGCTGAGTCACAGTAGACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658339.1 |
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| CDS TCA 72 bp | ACCTCCTTGTCTCATTCATGGAGTTGCAGTCTACTGTaGCTCAGCAGAAAATGGATGGTTTATGATCACCTG | + |
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Preference number: 6 (lower is better) Translates to: TSLSHSWSCSLL*LSRKWMVYDHL Trigger: CAGGTGATCATAAACCATCCATTTTCTGCTGAGTCACAGTAGACTGCAACTCCATGAATGAGACAAGGAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658339.1 |
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| CDS CAA 72 bp | TGTTTTTACCGACACCTCCTTGTCTCATTCATGGAGTaGCAGTCTACTGTGACTCAGCAGAAAATGGATGGT | + |
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Preference number: 6 (lower is better) Translates to: CFYRHLLVSFME*QSTVTQQKMDG Trigger: ACCATCCATTTTCTGCTGAGTCACAGTAGACTGCAACTCCATGAATGAGACAAGGAGGTGTCGGTAAAAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000658339.1 |
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| CDS CAA 72 bp | TTGGCTTCAGGGACTTTCGGCAAAGGTCCATTCAAATaGGTAATAACACAGCCAGAAGTTTTGGTGCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: LASGTFGKGPFK*VITQPEVLVLF Trigger: AAACAGCACCAAAACTTCTGGCTGTGTTATTACCAATTTGAATGGACCTTTGCCGAAAGTCCCTGAAGCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655959.1 |
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| CDS TCA 72 bp | ACAATTGATGAGTCTGGCTTTTATTCTCACCCAGAGTaGGCATTATCTAACATCTTCATGGAGAGTGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: TIDESGFYSHPE*ALSNIFMESEE Trigger: TTCTTCACTCTCCATGAAGATGTTAGATAATGCTCACTCTGGGTGAGAATAAAAGCCAGACTCATCAATTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655959.1 |
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| CDS CAA 72 bp | AAGTTTTGCTGGAAAAATTGTGAGTTTCCTATTTACTaGTCTCAGTTGTGGAGTAGTAGACTGATTTCATCT | + |
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Preference number: 6 (lower is better) Translates to: KFCWKNCEFPIY*SQLWSSRLISS Trigger: AGATGAAATCAGTCTACTACTCCACAACTGAGACAAGTAAATAGGAAACTCACAATTTTTCCAGCAAAACTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000655959.1 |
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